Wall clock time and date at job start Tue Mar 31 2020 05:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34706 * 116.99823 * 2 1 4 4 O 1.21467 * 120.00418 * 359.97438 * 3 2 1 5 5 C 1.47744 * 119.99833 * 179.97438 * 3 2 1 6 6 C 1.39709 * 120.09308 * 0.21478 * 5 3 2 7 7 C 1.38000 * 120.09211 * 180.27326 * 6 5 3 8 8 C 1.38172 * 120.27987 * 359.76747 * 7 6 5 9 9 C 1.39415 * 120.17984 * 359.97438 * 8 7 6 10 10 C 1.48428 * 120.04489 * 179.97438 * 9 8 7 11 11 C 1.39714 * 119.99644 * 179.75013 * 10 9 8 12 12 C 1.38393 * 120.37648 * 179.71912 * 11 10 9 13 13 C 1.37717 * 120.37896 * 0.55779 * 12 11 10 14 14 C 1.40752 * 119.98891 * 359.71593 * 13 12 11 15 15 C 1.41419 * 120.18761 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99862 * 204.48747 * 15 14 13 17 17 C 1.39934 * 119.99975 * 24.48975 * 15 14 13 18 18 N 1.30824 * 120.00047 * 17.89653 * 17 15 14 19 19 Si 1.86800 * 119.99869 * 197.89806 * 17 15 14 20 20 H 1.48504 * 109.46963 * 89.99717 * 19 17 15 21 21 H 1.48499 * 109.47147 * 209.99612 * 19 17 15 22 22 H 1.48506 * 109.47215 * 329.99730 * 19 17 15 23 23 C 1.38716 * 119.99645 * 0.02562 * 10 9 8 24 24 C 1.39085 * 119.90717 * 359.97438 * 9 8 7 25 25 H 1.09000 * 109.47656 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47408 * 300.00216 * 1 2 3 27 27 H 1.09009 * 109.47281 * 60.00093 * 1 2 3 28 28 H 1.08001 * 119.95152 * 0.02562 * 6 5 3 29 29 H 1.08006 * 119.86166 * 179.74184 * 7 6 5 30 30 H 1.08000 * 119.90908 * 179.97438 * 8 7 6 31 31 H 1.08005 * 119.81301 * 359.97438 * 11 10 9 32 32 H 1.08006 * 119.80871 * 180.27902 * 12 11 10 33 33 H 1.07998 * 120.00471 * 179.70436 * 13 12 11 34 34 H 0.97000 * 120.00200 * 180.02562 * 18 17 15 35 35 H 1.08000 * 120.19318 * 0.02562 * 23 10 9 36 36 H 1.07995 * 120.13530 * 180.02562 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4020 2.2190 -0.0005 5 6 3.5389 1.2776 0.0006 6 6 4.3017 0.1071 -0.0034 7 6 5.6798 0.1794 0.0028 8 6 6.3131 1.4074 0.0082 9 6 5.5632 2.5827 0.0068 10 6 6.2466 3.9003 0.0131 11 6 5.4941 5.0774 0.0065 12 6 6.1231 6.3101 0.0182 13 6 7.4979 6.3905 0.0249 14 6 8.2714 5.2146 0.0260 15 6 9.6834 5.2922 0.0335 16 1 10.2713 4.4729 -0.3531 17 6 10.3188 6.4306 0.5420 18 7 9.6618 7.2558 1.3158 19 14 12.1053 6.7718 0.1159 20 1 12.1713 7.5914 -1.1207 21 1 12.7486 7.5087 1.2331 22 1 12.8161 5.4865 -0.1036 23 6 7.6323 3.9627 0.0199 24 6 4.1739 2.5188 -0.0006 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8901 28 1 3.8122 -0.8555 -0.0073 29 1 6.2659 -0.7279 0.0039 30 1 7.3920 1.4569 0.0135 31 1 4.4154 5.0252 -0.0037 32 1 5.5323 7.2143 0.0174 33 1 7.9824 7.3557 0.0292 34 1 10.1021 8.0451 1.6680 35 1 8.2170 3.0547 0.0202 36 1 3.5893 3.4269 -0.0021 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239732091.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:02 Heat of formation + Delta-G solvation = -48.040589 kcal Electronic energy + Delta-G solvation = -20253.186522 eV Core-core repulsion = 17052.619190 eV Total energy + Delta-G solvation = -3200.567332 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.104 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.51784 -38.93676 -37.20073 -36.40979 -33.90095 -31.94182 -31.21421 -29.89328 -28.32744 -27.53641 -25.45007 -23.91445 -22.77363 -21.39112 -20.24464 -19.93692 -18.02965 -17.17022 -16.69393 -16.39214 -16.13591 -15.33670 -14.75925 -14.53393 -14.40794 -13.57487 -13.55148 -13.48420 -13.03879 -12.81999 -12.61081 -12.34850 -12.26764 -11.70711 -11.51470 -11.24992 -11.18628 -10.96230 -10.90957 -10.64982 -10.51789 -10.41063 -9.79294 -9.44040 -9.32010 -8.92698 -8.86695 -7.56890 -7.08741 -6.81231 -4.42756 0.83351 1.38484 2.51372 2.63237 2.74845 3.03748 3.06191 3.07757 3.19621 3.89228 4.09416 4.62444 4.71206 4.94118 5.02220 5.02242 5.07968 5.30514 5.40191 5.51815 5.61036 5.63896 5.92013 6.07604 6.21268 6.25760 6.36726 6.47760 6.55623 6.66899 6.83929 6.94237 7.06109 7.18781 7.27691 7.48248 7.72923 7.76324 7.93844 7.98230 8.18163 8.54453 8.81747 8.86999 10.13749 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.036684 B = 0.003376 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.083548 B = 8292.086684 C = 8969.002763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.357 6.357 3 C 0.511 3.489 4 O -0.507 6.507 5 C -0.131 4.131 6 C -0.083 4.083 7 C -0.131 4.131 8 C -0.083 4.083 9 C -0.019 4.019 10 C -0.045 4.045 11 C -0.219 4.219 12 C -0.107 4.107 13 C -0.152 4.152 14 C 0.106 3.894 15 C -0.464 4.464 16 H 0.078 0.922 17 C 0.076 3.924 18 N -0.794 5.794 19 Si 0.909 3.091 20 H -0.267 1.267 21 H -0.278 1.278 22 H -0.262 1.262 23 C -0.201 4.201 24 C -0.056 4.056 25 H 0.100 0.900 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.131 0.869 29 H 0.128 0.872 30 H 0.135 0.865 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.120 0.880 34 H 0.281 0.719 35 H 0.098 0.902 36 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.035 -11.549 -1.818 14.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.274 6.274 3 C 0.356 3.644 4 O -0.396 6.396 5 C -0.132 4.132 6 C -0.102 4.102 7 C -0.149 4.149 8 C -0.101 4.101 9 C -0.019 4.019 10 C -0.045 4.045 11 C -0.238 4.238 12 C -0.125 4.125 13 C -0.172 4.172 14 C 0.104 3.896 15 C -0.494 4.494 16 H 0.097 0.903 17 C -0.142 4.142 18 N -0.419 5.419 19 Si 0.733 3.267 20 H -0.193 1.193 21 H -0.203 1.203 22 H -0.186 1.186 23 C -0.221 4.221 24 C -0.074 4.074 25 H 0.119 0.881 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.149 0.851 29 H 0.146 0.854 30 H 0.152 0.848 31 H 0.111 0.889 32 H 0.110 0.890 33 H 0.138 0.862 34 H 0.092 0.908 35 H 0.116 0.884 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -9.235 -11.046 -1.665 14.494 hybrid contribution 0.541 0.328 -0.036 0.634 sum -8.694 -10.718 -1.700 13.905 Atomic orbital electron populations 1.23253 0.76326 1.03533 1.02622 1.86544 1.23292 1.32947 1.84583 1.21357 0.89323 0.81231 0.72440 1.90827 1.66838 1.36017 1.45947 1.18942 0.88335 0.95133 1.10801 1.21305 0.93975 0.97315 0.97574 1.21043 0.94112 0.97883 1.01887 1.21671 1.00988 0.91534 0.95897 1.19099 0.91912 0.94015 0.96922 1.18231 0.93317 0.89722 1.03278 1.20470 0.97173 0.92126 1.14039 1.20646 0.95105 0.95639 1.01142 1.21462 0.92052 0.99262 1.04379 1.17540 0.93442 0.90499 0.88121 1.19557 0.91514 1.02055 1.36258 0.90338 1.25900 1.00627 0.95137 0.92502 1.69814 1.38730 1.11175 1.22190 0.86308 0.81856 0.79515 0.79025 1.19255 1.20323 1.18602 1.21056 0.91936 0.97124 1.11973 1.21411 0.94245 0.96496 0.95248 0.88122 0.91881 0.91897 0.85092 0.85402 0.84759 0.88863 0.89007 0.86246 0.90792 0.88376 0.84323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.56 101.05 1.07 1.39 16 2 O -0.36 -4.42 9.81 -40.51 -0.40 -4.82 16 3 C 0.51 7.76 7.90 34.62 0.27 8.03 16 4 O -0.51 -8.90 16.13 -19.24 -0.31 -9.21 16 5 C -0.13 -2.03 5.87 -105.02 -0.62 -2.65 16 6 C -0.08 -1.10 9.61 -39.12 -0.38 -1.47 16 7 C -0.13 -1.72 10.02 -39.69 -0.40 -2.11 16 8 C -0.08 -1.32 9.42 -39.17 -0.37 -1.69 16 9 C -0.02 -0.36 5.87 -104.95 -0.62 -0.98 16 10 C -0.05 -1.00 5.87 -104.97 -0.62 -1.61 16 11 C -0.22 -4.86 9.43 -38.97 -0.37 -5.23 16 12 C -0.11 -2.48 10.01 -39.71 -0.40 -2.88 16 13 C -0.15 -3.88 8.69 -38.82 -0.34 -4.21 16 14 C 0.11 2.75 5.57 -106.86 -0.60 2.15 16 15 C -0.46 -11.94 9.05 -37.74 -0.34 -12.28 16 16 H 0.08 1.93 7.91 -52.49 -0.42 1.52 16 17 C 0.08 1.87 5.14 -17.35 -0.09 1.78 16 18 N -0.79 -20.13 10.96 55.55 0.61 -19.52 16 19 Si 0.91 18.25 29.60 -169.99 -5.03 13.22 16 20 H -0.27 -5.33 7.11 56.52 0.40 -4.92 16 21 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 22 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 23 C -0.20 -4.73 9.17 -38.53 -0.35 -5.08 16 24 C -0.06 -0.98 8.97 -38.83 -0.35 -1.33 16 25 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 28 H 0.13 1.40 7.60 -52.49 -0.40 1.00 16 29 H 0.13 1.27 8.06 -52.48 -0.42 0.85 16 30 H 0.13 2.05 6.18 -52.49 -0.32 1.72 16 31 H 0.09 1.88 6.18 -52.48 -0.32 1.56 16 32 H 0.09 1.90 8.06 -52.48 -0.42 1.48 16 33 H 0.12 3.13 6.15 -52.49 -0.32 2.81 16 34 H 0.28 6.49 8.30 -40.82 -0.34 6.15 16 35 H 0.10 2.11 6.18 -52.49 -0.32 1.78 16 36 H 0.14 2.50 5.77 -52.49 -0.30 2.20 16 LS Contribution 313.75 15.07 4.73 4.73 Total: -1.00 -28.58 313.75 -8.54 -37.12 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -3.66 Total: 6.65 kcal Atomic # 6 Polarization: -23.69 SS G_CDS: -4.48 Total: -28.17 kcal Atomic # 7 Polarization: -20.13 SS G_CDS: 0.61 Total: -19.52 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: -0.71 Total: -14.03 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.03 Total: 13.22 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -28.58 -8.54 -37.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239732091.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.923 kcal (2) G-P(sol) polarization free energy of solvation -28.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds