Wall clock time and date at job start Tue Mar 31 2020 05:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.31213 * 119.79641 * 2 1 4 4 C 1.33084 * 121.72592 * 179.97438 * 3 2 1 5 5 C 1.47797 * 119.45069 * 180.02562 * 4 3 2 6 6 C 1.39443 * 120.21666 * 186.60649 * 5 4 3 7 7 C 1.37994 * 119.99007 * 179.74526 * 6 5 4 8 8 C 1.38546 * 120.44643 * 0.56936 * 7 6 5 9 9 C 1.38037 * 120.44802 * 359.68908 * 8 7 6 10 10 C 1.39405 * 119.98931 * 0.02562 * 9 8 7 11 11 C 1.47652 * 120.21627 * 180.02562 * 10 9 8 12 12 N 1.34781 * 120.00376 * 57.02431 * 11 10 9 13 13 O 1.21585 * 119.99773 * 237.02447 * 11 10 9 14 14 C 1.39950 * 121.09064 * 0.05151 * 4 3 2 15 15 C 1.36598 * 119.46825 * 359.97155 * 14 4 3 16 16 C 1.41012 * 119.79839 * 180.02562 * 2 1 3 17 17 C 1.40984 * 120.55302 * 0.25379 * 16 2 1 18 18 H 1.08006 * 120.00001 * 333.33422 * 17 16 2 19 19 C 1.40110 * 120.00517 * 153.32820 * 17 16 2 20 20 N 1.30739 * 119.99786 * 347.38627 * 19 17 16 21 21 Si 1.86795 * 120.00067 * 167.37629 * 19 17 16 22 22 H 1.48499 * 109.46978 * 90.00760 * 21 19 17 23 23 H 1.48508 * 109.47085 * 210.00183 * 21 19 17 24 24 H 1.48497 * 109.47499 * 330.00391 * 21 19 17 25 25 H 1.08995 * 109.47425 * 269.95833 * 1 2 3 26 26 H 1.09002 * 109.47219 * 29.95716 * 1 2 3 27 27 H 1.09008 * 109.47239 * 149.95608 * 1 2 3 28 28 H 1.08004 * 120.00510 * 0.03171 * 6 5 4 29 29 H 1.08001 * 119.77793 * 180.27552 * 7 6 5 30 30 H 1.08003 * 119.77464 * 179.71940 * 8 7 6 31 31 H 1.08007 * 120.00137 * 180.02562 * 9 8 7 32 32 H 0.96993 * 119.99462 * 359.97438 * 12 11 10 33 33 H 0.97002 * 120.00031 * 179.97438 * 12 11 10 34 34 H 1.08003 * 120.26231 * 179.97438 * 14 4 3 35 35 H 1.07996 * 120.79422 * 179.97438 * 15 14 4 36 36 H 0.96995 * 120.00078 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1590 1.1387 0.0000 4 6 3.4890 1.1835 0.0005 5 6 4.1720 2.4942 0.0011 6 6 5.5578 2.5635 -0.1370 7 6 6.1901 3.7900 -0.1412 8 6 5.4583 4.9576 0.0030 9 6 4.0862 4.9100 0.1463 10 6 3.4279 3.6812 0.1472 11 6 1.9604 3.6245 0.2995 12 7 1.1669 4.2870 -0.5653 13 8 1.4678 2.9801 1.2053 14 6 4.2517 0.0100 0.0000 15 6 3.6207 -1.2015 -0.0005 16 6 2.2077 -1.2237 -0.0005 17 6 1.5103 -2.4489 -0.0065 18 1 0.5151 -2.5059 0.4093 19 6 2.1080 -3.5928 -0.5518 20 7 3.1947 -3.4829 -1.2705 21 14 1.3526 -5.2746 -0.2520 22 1 0.3741 -5.5765 -1.3274 23 1 2.4221 -6.3049 -0.2525 24 1 0.6611 -5.2796 1.0621 25 1 -0.3634 -0.0007 1.0276 26 1 -0.3634 0.8904 -0.5132 27 1 -0.3634 -0.8896 -0.5145 28 1 6.1358 1.6576 -0.2454 29 1 7.2632 3.8400 -0.2528 30 1 5.9648 5.9115 0.0028 31 1 3.5228 5.8247 0.2578 32 1 1.5600 4.8013 -1.2876 33 1 0.2028 4.2494 -0.4654 34 1 5.3305 0.0620 0.0000 35 1 4.1881 -2.1204 -0.0013 36 1 3.6088 -4.2748 -1.6477 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239760735.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:44 Heat of formation + Delta-G solvation = 16.099971 kcal Electronic energy + Delta-G solvation = -21415.716501 eV Core-core repulsion = 18250.223263 eV Total energy + Delta-G solvation = -3165.493237 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.62808 -38.15736 -37.38003 -34.32068 -32.95520 -32.32361 -31.02291 -30.40626 -29.61396 -26.93869 -25.27402 -23.36027 -22.59774 -21.11118 -19.92467 -19.69211 -17.47409 -17.40270 -16.28452 -15.94131 -15.48782 -14.97439 -14.53784 -14.12987 -14.02849 -13.43348 -13.18797 -13.11541 -13.03301 -12.51795 -12.23260 -11.93628 -11.65820 -11.60874 -11.33637 -11.17025 -11.07124 -10.83552 -10.77240 -10.56887 -9.82071 -9.56897 -9.20078 -9.00859 -8.69415 -8.53119 -8.14829 -7.88721 -7.23367 -6.94831 -4.54957 1.39171 1.63844 2.66265 2.93682 2.96128 2.99764 3.17502 3.57449 3.73619 4.06507 4.32261 4.63241 5.19655 5.23855 5.27283 5.46935 5.60109 5.78269 5.83098 5.98947 6.24629 6.34122 6.39137 6.50822 6.66222 6.71137 6.73487 6.79786 6.83478 6.90813 7.01839 7.16996 7.28272 7.32353 7.42438 7.68793 7.80319 7.89591 7.98111 8.32589 8.51627 8.63761 9.08543 9.65279 9.88872 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.025174 B = 0.005126 C = 0.004370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.971988 B = 5461.427151 C = 6405.141971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.017 3.983 3 N -0.414 5.414 4 C -0.022 4.022 5 C 0.066 3.934 6 C -0.140 4.140 7 C -0.098 4.098 8 C -0.159 4.159 9 C -0.090 4.090 10 C -0.136 4.136 11 C 0.586 3.414 12 N -0.861 5.861 13 O -0.505 6.505 14 C -0.120 4.120 15 C -0.146 4.146 16 C 0.076 3.924 17 C -0.426 4.426 18 H 0.089 0.911 19 C 0.070 3.930 20 N -0.779 5.779 21 Si 0.916 3.084 22 H -0.266 1.266 23 H -0.274 1.274 24 H -0.257 1.257 25 H 0.049 0.951 26 H 0.047 0.953 27 H 0.063 0.937 28 H 0.126 0.874 29 H 0.118 0.882 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.392 0.608 33 H 0.395 0.605 34 H 0.100 0.900 35 H 0.129 0.871 36 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.003 8.963 -1.474 9.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.130 4.130 3 N -0.122 5.122 4 C -0.154 4.154 5 C 0.064 3.936 6 C -0.159 4.159 7 C -0.117 4.117 8 C -0.178 4.178 9 C -0.108 4.108 10 C -0.140 4.140 11 C 0.371 3.629 12 N -0.425 5.425 13 O -0.377 6.377 14 C -0.141 4.141 15 C -0.170 4.170 16 C 0.071 3.929 17 C -0.455 4.455 18 H 0.107 0.893 19 C -0.150 4.150 20 N -0.402 5.402 21 Si 0.740 3.260 22 H -0.191 1.191 23 H -0.198 1.198 24 H -0.181 1.181 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.082 0.918 28 H 0.144 0.856 29 H 0.136 0.864 30 H 0.135 0.865 31 H 0.136 0.864 32 H 0.219 0.781 33 H 0.225 0.775 34 H 0.118 0.882 35 H 0.146 0.854 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.600 9.095 -0.941 9.283 hybrid contribution 0.263 -1.396 -0.350 1.463 sum 1.863 7.699 -1.291 8.026 Atomic orbital electron populations 1.20195 0.91108 1.00660 1.00400 1.21040 0.95218 0.87895 1.08872 1.66978 1.07830 1.29844 1.07595 1.18710 0.89600 0.90326 1.16791 1.18677 0.91884 0.91119 0.91885 1.21168 0.93534 0.97904 1.03319 1.21055 0.99368 0.92404 0.98825 1.20860 0.93818 0.97965 1.05116 1.21021 0.94718 0.95951 0.99134 1.19866 0.93764 0.93349 1.07016 1.17744 0.86217 0.77195 0.81749 1.43721 1.09912 1.55251 1.33634 1.90780 1.75458 1.38215 1.33288 1.21277 0.98414 0.93464 1.00901 1.21314 0.94683 0.96609 1.04420 1.18488 0.92614 0.93207 0.88616 1.19740 1.02119 0.92253 1.31344 0.89328 1.26121 0.94315 1.01962 0.92634 1.69745 1.16367 1.32512 1.21605 0.86159 0.79648 0.79840 0.80375 1.19096 1.19837 1.18090 0.93273 0.93442 0.91836 0.85624 0.86418 0.86531 0.86417 0.78106 0.77476 0.88194 0.85378 0.90259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.46 9.58 36.00 0.34 -1.12 16 2 C 0.02 0.44 6.86 -81.81 -0.56 -0.12 16 3 N -0.41 -10.55 5.75 -5.41 -0.03 -10.58 16 4 C -0.02 -0.53 6.64 -82.77 -0.55 -1.08 16 5 C 0.07 1.37 5.90 -104.55 -0.62 0.75 16 6 C -0.14 -2.43 9.40 -39.22 -0.37 -2.80 16 7 C -0.10 -1.40 10.02 -39.56 -0.40 -1.80 16 8 C -0.16 -2.14 10.03 -39.54 -0.40 -2.54 16 9 C -0.09 -1.33 9.77 -39.22 -0.38 -1.72 16 10 C -0.14 -2.57 5.66 -104.63 -0.59 -3.16 16 11 C 0.59 11.52 5.91 -12.42 -0.07 11.44 16 12 N -0.86 -12.50 8.86 30.49 0.27 -12.23 16 13 O -0.50 -12.16 15.49 5.29 0.08 -12.08 16 14 C -0.12 -2.87 9.37 -39.53 -0.37 -3.24 16 15 C -0.15 -3.74 8.71 -39.00 -0.34 -4.08 16 16 C 0.08 1.99 5.58 -106.64 -0.60 1.40 16 17 C -0.43 -10.67 8.12 -37.84 -0.31 -10.98 16 18 H 0.09 2.11 6.89 -52.48 -0.36 1.74 16 19 C 0.07 1.64 5.25 -17.31 -0.09 1.55 16 20 N -0.78 -18.87 10.81 55.56 0.60 -18.27 16 21 Si 0.92 17.46 29.58 -169.99 -5.03 12.43 16 22 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 23 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 24 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 25 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.06 1.33 6.78 -51.92 -0.35 0.98 16 28 H 0.13 2.04 6.20 -52.48 -0.33 1.72 16 29 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 30 H 0.12 1.21 8.06 -52.48 -0.42 0.78 16 31 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 32 H 0.39 4.49 8.81 -40.82 -0.36 4.13 16 33 H 0.40 5.19 8.93 -40.82 -0.36 4.82 16 34 H 0.10 2.07 6.21 -52.48 -0.33 1.75 16 35 H 0.13 3.30 6.21 -52.49 -0.33 2.97 16 36 H 0.29 6.25 8.29 -40.82 -0.34 5.91 16 LS Contribution 307.41 15.07 4.63 4.63 Total: -1.00 -31.02 307.41 -8.43 -39.46 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: -3.66 Total: 14.12 kcal Atomic # 6 Polarization: -12.18 SS G_CDS: -5.30 Total: -17.48 kcal Atomic # 7 Polarization: -41.92 SS G_CDS: 0.84 Total: -41.08 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: 0.08 Total: -12.08 kcal Atomic # 14 Polarization: 17.46 SS G_CDS: -5.03 Total: 12.43 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.02 -8.43 -39.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239760735.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.556 kcal (2) G-P(sol) polarization free energy of solvation -31.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds