Wall clock time and date at job start Tue Mar 31 2020 05:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30732 * 1 3 3 Si 1.86807 * 119.99918 * 2 1 4 4 H 1.48502 * 109.47162 * 270.00166 * 3 2 1 5 5 H 1.48498 * 109.47044 * 29.99879 * 3 2 1 6 6 H 1.48493 * 109.46896 * 150.00142 * 3 2 1 7 7 C 1.40041 * 120.00442 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00394 * 186.25953 * 7 2 1 9 9 C 1.41320 * 119.99640 * 6.26127 * 7 2 1 10 10 C 1.40846 * 120.14685 * 173.70489 * 9 7 2 11 11 N 1.31874 * 119.97784 * 179.97438 * 10 9 7 12 12 C 1.32189 * 120.28706 * 359.71084 * 11 10 9 13 13 C 1.40056 * 120.28929 * 0.56548 * 12 11 10 14 14 C 1.48214 * 119.98447 * 179.70591 * 13 12 11 15 15 C 1.39500 * 120.14140 * 179.72626 * 14 13 12 16 16 C 1.37644 * 119.82777 * 180.02562 * 15 14 13 17 17 C 1.39334 * 120.39162 * 359.97438 * 16 15 14 18 18 C 1.38561 * 119.89230 * 359.84763 * 17 16 15 19 19 C 1.38226 * 119.94983 * 0.24825 * 18 17 16 20 20 C 1.50797 * 121.39120 * 180.48616 * 18 17 16 21 21 C 1.53060 * 109.71391 * 342.18427 * 20 18 17 22 22 C 1.53411 * 108.28354 * 48.16652 * 21 20 18 23 23 O 1.35818 * 118.36836 * 179.80923 * 17 16 15 24 24 N 1.32579 * 120.02453 * 359.43740 * 13 12 11 25 25 H 0.96999 * 120.00220 * 0.02562 * 1 2 3 26 26 H 1.08006 * 120.01345 * 359.97438 * 10 9 7 27 27 H 1.08001 * 119.85574 * 180.29990 * 12 11 10 28 28 H 1.08001 * 120.08654 * 0.04380 * 15 14 13 29 29 H 1.08001 * 119.80749 * 180.02562 * 16 15 14 30 30 H 1.08002 * 119.88470 * 179.81595 * 19 18 17 31 31 H 1.09005 * 109.43614 * 102.22598 * 20 18 17 32 32 H 1.09002 * 109.43629 * 222.13378 * 20 18 17 33 33 H 1.08992 * 109.67688 * 288.48452 * 21 20 18 34 34 H 1.09001 * 109.72802 * 167.87536 * 21 20 18 35 35 H 1.08998 * 109.68336 * 175.54107 * 22 21 20 36 36 H 1.08996 * 109.68384 * 55.01689 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 2.4888 2.0465 -1.4001 5 1 1.4387 2.6527 0.7000 6 1 3.5388 1.4402 0.7000 7 6 2.0076 -1.2127 -0.0005 8 1 3.0828 -1.2156 0.1014 9 6 1.3074 -2.4329 -0.1346 10 6 2.0148 -3.6434 -0.2687 11 7 1.3579 -4.7802 -0.3930 12 6 0.0361 -4.7905 -0.3868 13 6 -0.6791 -3.5930 -0.2599 14 6 -2.1611 -3.6117 -0.2603 15 6 -2.8767 -2.4215 -0.1284 16 6 -4.2529 -2.4464 -0.1290 17 6 -4.9360 -3.6536 -0.2612 18 6 -4.2275 -4.8368 -0.3960 19 6 -2.8454 -4.8176 -0.3940 20 6 -4.9322 -6.1608 -0.5521 21 6 -6.3878 -6.0277 -0.0979 22 6 -6.9843 -4.7761 -0.7545 23 8 -6.2940 -3.6310 -0.2526 24 7 -0.0309 -2.4433 -0.1342 25 1 -0.4850 0.8400 -0.0004 26 1 3.0948 -3.6407 -0.2697 27 1 -0.4947 -5.7260 -0.4842 28 1 -2.3523 -1.4829 -0.0264 29 1 -4.8066 -1.5248 -0.0273 30 1 -2.2943 -5.7407 -0.4962 31 1 -4.9058 -6.4646 -1.5987 32 1 -4.4301 -6.9129 0.0565 33 1 -6.4261 -5.9274 0.9867 34 1 -6.9514 -6.9084 -0.4062 35 1 -8.0438 -4.7026 -0.5095 36 1 -6.8607 -4.8344 -1.8358 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240772393.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:22 Heat of formation + Delta-G solvation = 16.216233 kcal Electronic energy + Delta-G solvation = -20977.700564 eV Core-core repulsion = 17812.212368 eV Total energy + Delta-G solvation = -3165.488196 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.39616 -39.00059 -37.05477 -34.19886 -34.08570 -32.39962 -31.11213 -30.19603 -28.76790 -26.05320 -25.55043 -23.83580 -22.70582 -22.09478 -21.14408 -19.35728 -17.63599 -17.45338 -16.54580 -15.83752 -15.42222 -15.32226 -14.96496 -14.58318 -14.26009 -13.77356 -13.49858 -13.28584 -13.14626 -12.93741 -12.81979 -12.23755 -11.73414 -11.49221 -11.39353 -11.35398 -11.20805 -10.92048 -10.82118 -10.69783 -10.30735 -10.16476 -9.86590 -9.56006 -9.21884 -8.38732 -8.23099 -7.48758 -7.16937 -6.57429 -4.73695 1.46569 1.80071 2.63197 2.98395 3.00828 3.03677 3.15659 3.46944 3.81499 4.21572 4.62293 4.66335 4.71967 4.79916 5.05034 5.18845 5.34307 5.42443 5.48612 5.58400 5.73429 5.76254 5.77798 5.94423 5.98220 6.02440 6.21203 6.28037 6.34972 6.53617 6.66367 6.74517 6.92808 6.97021 7.08593 7.28299 7.35371 7.60059 7.72718 7.99926 8.36961 8.61146 9.19282 9.77077 10.08398 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.023677 B = 0.004557 C = 0.003844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.280817 B = 6142.471649 C = 7281.855593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.712 5.712 2 C 0.068 3.932 3 Si 0.913 3.087 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.413 4.413 8 H 0.091 0.909 9 C 0.209 3.791 10 C -0.064 4.064 11 N -0.430 5.430 12 C -0.110 4.110 13 C 0.142 3.858 14 C -0.047 4.047 15 C -0.045 4.045 16 C -0.158 4.158 17 C 0.122 3.878 18 C -0.172 4.172 19 C -0.073 4.073 20 C -0.074 4.074 21 C -0.159 4.159 22 C 0.062 3.938 23 O -0.320 6.320 24 N -0.444 5.444 25 H 0.277 0.723 26 H 0.134 0.866 27 H 0.127 0.873 28 H 0.157 0.843 29 H 0.126 0.874 30 H 0.126 0.874 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.102 0.898 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.380 -4.927 -0.969 12.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.333 5.333 2 C -0.159 4.159 3 Si 0.737 3.263 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.445 4.445 8 H 0.109 0.891 9 C 0.083 3.917 10 C -0.234 4.234 11 N -0.141 5.141 12 C -0.269 4.269 13 C -0.005 4.005 14 C -0.049 4.049 15 C -0.064 4.064 16 C -0.177 4.177 17 C 0.077 3.923 18 C -0.173 4.173 19 C -0.092 4.092 20 C -0.111 4.111 21 C -0.196 4.196 22 C -0.014 4.014 23 O -0.234 6.234 24 N -0.162 5.162 25 H 0.088 0.912 26 H 0.151 0.849 27 H 0.144 0.856 28 H 0.174 0.826 29 H 0.144 0.856 30 H 0.144 0.856 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.120 0.880 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.689 -4.633 -0.898 12.606 hybrid contribution 0.425 0.447 -0.103 0.626 sum -11.263 -4.186 -1.002 12.058 Atomic orbital electron populations 1.70033 1.07431 1.28420 1.27389 1.26111 0.94976 1.01403 0.93369 0.86219 0.80437 0.80218 0.79414 1.19234 1.19970 1.18355 1.19638 0.95027 0.89181 1.40665 0.89078 1.19363 0.88776 0.93423 0.90169 1.23210 0.99288 0.89410 1.11469 1.67657 1.08837 1.30067 1.07568 1.22498 0.90653 0.97012 1.16698 1.20604 0.92486 0.91660 0.95746 1.18591 0.91521 0.92867 1.01941 1.21491 0.91895 0.99948 0.93057 1.20572 0.94112 0.95633 1.07363 1.18776 0.81629 0.93405 0.98475 1.19545 0.94094 0.93861 1.09780 1.20961 0.92275 0.97859 0.98140 1.20409 0.94277 0.94532 1.01852 1.22219 0.96831 0.98655 1.01915 1.22882 0.96089 0.84474 0.97932 1.85958 1.16435 1.41182 1.79847 1.69535 1.08020 1.23164 1.15442 0.91164 0.84886 0.85563 0.82572 0.85641 0.85630 0.90840 0.90246 0.90555 0.90150 0.88040 0.92111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -17.68 11.51 55.55 0.64 -17.04 16 2 C 0.07 1.62 5.49 -17.34 -0.10 1.53 16 3 Si 0.91 17.60 29.56 -169.99 -5.03 12.57 16 4 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 5 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 6 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 7 C -0.41 -10.49 9.15 -37.74 -0.35 -10.83 16 8 H 0.09 2.13 7.85 -52.49 -0.41 1.71 16 9 C 0.21 5.60 6.54 -84.84 -0.55 5.05 16 10 C -0.06 -1.61 10.98 -16.55 -0.18 -1.79 16 11 N -0.43 -10.75 10.47 -12.04 -0.13 -10.87 16 12 C -0.11 -2.61 10.62 -16.72 -0.18 -2.79 16 13 C 0.14 3.47 6.74 -82.76 -0.56 2.91 16 14 C -0.05 -1.00 5.87 -104.93 -0.62 -1.62 16 15 C -0.05 -0.92 9.57 -39.33 -0.38 -1.30 16 16 C -0.16 -2.80 9.92 -39.39 -0.39 -3.19 16 17 C 0.12 2.02 6.48 -39.05 -0.25 1.76 16 18 C -0.17 -2.70 5.75 -104.46 -0.60 -3.30 16 19 C -0.07 -1.29 9.04 -39.19 -0.35 -1.65 16 20 C -0.07 -0.86 5.85 -27.80 -0.16 -1.02 16 21 C -0.16 -1.53 6.20 -26.49 -0.16 -1.70 16 22 C 0.06 0.64 7.02 37.37 0.26 0.90 16 23 O -0.32 -4.70 10.26 -19.17 -0.20 -4.90 16 24 N -0.44 -11.87 7.17 -7.51 -0.05 -11.92 16 25 H 0.28 6.20 8.29 -40.82 -0.34 5.86 16 26 H 0.13 3.01 8.06 -52.48 -0.42 2.59 16 27 H 0.13 2.60 6.18 -52.49 -0.32 2.27 16 28 H 0.16 3.47 7.55 -52.49 -0.40 3.08 16 29 H 0.13 1.99 8.06 -52.49 -0.42 1.56 16 30 H 0.13 2.02 6.18 -52.49 -0.32 1.70 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 306.54 15.07 4.62 4.62 Total: -1.00 -29.33 306.54 -8.68 -38.01 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -3.97 Total: 6.56 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: -4.57 Total: -17.03 kcal Atomic # 7 Polarization: -40.30 SS G_CDS: 0.46 Total: -39.84 kcal Atomic # 8 Polarization: -4.70 SS G_CDS: -0.20 Total: -4.90 kcal Atomic # 14 Polarization: 17.60 SS G_CDS: -5.03 Total: 12.57 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.33 -8.68 -38.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240772393.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.228 kcal (2) G-P(sol) polarization free energy of solvation -29.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds