Wall clock time and date at job start Tue Mar 31 2020 05:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30820 * 1 3 3 Si 1.86803 * 119.99971 * 2 1 4 4 H 1.48507 * 109.46923 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46999 * 299.99909 * 3 2 1 6 6 H 1.48494 * 109.47121 * 60.00453 * 3 2 1 7 7 C 1.39971 * 120.00109 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99830 * 163.12874 * 7 2 1 9 9 C 1.41008 * 119.99919 * 343.13381 * 7 2 1 10 10 C 1.41340 * 120.54648 * 335.63861 * 9 7 2 11 11 C 1.36529 * 118.42576 * 180.02562 * 10 9 7 12 12 C 1.40006 * 119.46174 * 359.97438 * 11 10 9 13 13 C 1.47777 * 119.45881 * 180.02562 * 12 11 10 14 14 C 1.39758 * 120.00706 * 4.97658 * 13 12 11 15 15 C 1.37794 * 119.91735 * 180.02562 * 14 13 12 16 16 C 1.38935 * 120.07630 * 359.96440 * 15 14 13 17 17 C 1.39570 * 120.37884 * 359.96016 * 16 15 14 18 18 C 1.38245 * 119.69123 * 359.83156 * 17 16 15 19 19 O 1.35970 * 120.77377 * 180.22209 * 17 16 15 20 20 C 1.42965 * 117.72109 * 339.85472 * 19 17 16 21 21 C 1.53529 * 108.76242 * 49.33876 * 20 19 17 22 22 N 1.39962 * 119.90765 * 179.82715 * 16 15 14 23 23 N 1.33092 * 121.08343 * 0.02562 * 12 11 10 24 24 C 1.31241 * 121.71560 * 359.97438 * 23 12 11 25 25 H 0.97006 * 119.99959 * 359.97438 * 1 2 3 26 26 H 1.07998 * 120.78847 * 0.04063 * 10 9 7 27 27 H 1.07998 * 120.27014 * 179.97438 * 11 10 9 28 28 H 1.08000 * 120.03984 * 0.02562 * 14 13 12 29 29 H 1.08001 * 119.96375 * 179.97438 * 15 14 13 30 30 H 1.07999 * 120.02727 * 180.19675 * 18 17 16 31 31 H 1.09003 * 109.58582 * 289.55692 * 20 19 17 32 32 H 1.09001 * 109.70444 * 169.19865 * 20 19 17 33 33 H 1.09000 * 109.82853 * 182.23388 * 21 20 19 34 34 H 1.09002 * 109.82923 * 61.28501 * 21 20 19 35 35 H 0.97000 * 121.11740 * 346.24464 * 22 16 15 36 36 H 1.08001 * 119.79582 * 180.02562 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7023 1.3464 -0.0006 5 1 1.8835 2.3964 -1.2125 6 1 1.8835 2.3964 1.2125 7 6 2.0081 -1.2122 -0.0005 8 1 3.0532 -1.2321 -0.2720 9 6 1.3485 -2.4072 0.3532 10 6 0.1990 -2.3771 1.1751 11 6 -0.4050 -3.5600 1.4912 12 6 0.1253 -4.7577 0.9970 13 6 -0.5289 -6.0380 1.3387 14 6 -1.7251 -6.0406 2.0614 15 6 -2.3333 -7.2354 2.3795 16 6 -1.7591 -8.4365 1.9820 17 6 -0.5655 -8.4429 1.2586 18 6 0.0450 -7.2458 0.9341 19 8 0.0012 -9.6134 0.8617 20 6 -0.3838 -10.8058 1.5502 21 6 -1.9165 -10.8636 1.6184 22 7 -2.3779 -9.6482 2.3101 23 7 1.2091 -4.7623 0.2244 24 6 1.8248 -3.6516 -0.1070 25 1 -0.4850 0.8401 0.0004 26 1 -0.1923 -1.4406 1.5441 27 1 -1.2848 -3.5717 2.1174 28 1 -2.1722 -5.1072 2.3701 29 1 -3.2575 -7.2383 2.9383 30 1 0.9671 -7.2443 0.3718 31 1 0.0267 -10.7934 2.5599 32 1 -0.0086 -11.6773 1.0138 33 1 -2.2287 -11.7471 2.1752 34 1 -2.3305 -10.8952 0.6105 35 1 -3.0867 -9.6862 2.9712 36 1 2.7017 -3.6913 -0.7361 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241437648.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:02 Heat of formation + Delta-G solvation = 17.008450 kcal Electronic energy + Delta-G solvation = -20558.704684 eV Core-core repulsion = 17393.250841 eV Total energy + Delta-G solvation = -3165.453843 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.29151 -38.49983 -36.83204 -35.16971 -34.14556 -31.39881 -30.83286 -29.84336 -29.36415 -27.08418 -25.25252 -23.80613 -22.79855 -21.51786 -20.95353 -19.77956 -17.57695 -17.49779 -17.13464 -16.36689 -15.59539 -15.22189 -14.83599 -14.50157 -14.35207 -13.87403 -13.66765 -13.31903 -13.14441 -13.08344 -12.73353 -12.20655 -12.04672 -11.73457 -11.51355 -11.32314 -11.26326 -10.96231 -10.72763 -10.63115 -10.38735 -9.89811 -9.80368 -9.40592 -8.31669 -8.09887 -8.02276 -7.76803 -7.01270 -6.72379 -4.50685 1.68177 1.93042 2.69617 2.95955 2.98678 3.02390 3.18231 3.35865 3.63793 3.76531 4.26066 4.62727 4.68932 4.91174 4.99768 5.16115 5.33373 5.45989 5.63200 5.67189 5.70881 5.89325 6.01544 6.13174 6.35093 6.54229 6.68369 6.69275 6.74109 6.88424 6.96798 7.13508 7.18516 7.23975 7.38826 7.71675 7.76417 7.81808 7.90452 7.94218 8.35534 8.55269 8.65353 9.60785 9.91889 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.048392 B = 0.003318 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.468601 B = 8436.865106 C = 8926.919267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.072 3.928 3 Si 0.915 3.085 4 H -0.257 1.257 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.436 4.436 8 H 0.087 0.913 9 C 0.067 3.933 10 C -0.143 4.143 11 C -0.123 4.123 12 C 0.002 3.998 13 C 0.006 3.994 14 C -0.118 4.118 15 C -0.151 4.151 16 C 0.109 3.891 17 C 0.056 3.944 18 C -0.098 4.098 19 O -0.315 6.315 20 C 0.045 3.955 21 C 0.090 3.910 22 N -0.760 5.760 23 N -0.449 5.449 24 C -0.016 4.016 25 H 0.285 0.715 26 H 0.126 0.874 27 H 0.102 0.898 28 H 0.124 0.876 29 H 0.117 0.883 30 H 0.137 0.863 31 H 0.061 0.939 32 H 0.108 0.892 33 H 0.086 0.914 34 H 0.064 0.936 35 H 0.401 0.599 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.568 -12.553 4.753 14.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.148 4.148 3 Si 0.738 3.262 4 H -0.181 1.181 5 H -0.197 1.197 6 H -0.195 1.195 7 C -0.465 4.465 8 H 0.105 0.895 9 C 0.063 3.937 10 C -0.168 4.168 11 C -0.144 4.144 12 C -0.132 4.132 13 C 0.004 3.996 14 C -0.138 4.138 15 C -0.173 4.173 16 C 0.010 3.990 17 C 0.009 3.991 18 C -0.118 4.118 19 O -0.230 6.230 20 C -0.032 4.032 21 C -0.036 4.036 22 N -0.397 5.397 23 N -0.157 5.157 24 C -0.181 4.181 25 H 0.097 0.903 26 H 0.144 0.856 27 H 0.120 0.880 28 H 0.142 0.858 29 H 0.135 0.865 30 H 0.155 0.845 31 H 0.079 0.921 32 H 0.126 0.874 33 H 0.104 0.896 34 H 0.082 0.918 35 H 0.236 0.764 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -4.256 -13.328 4.188 14.605 hybrid contribution -0.587 1.502 0.703 1.759 sum -4.843 -11.827 4.892 13.684 Atomic orbital electron populations 1.69806 1.07835 1.29869 1.32735 1.26069 0.94844 1.01905 0.92028 0.86141 0.81034 0.80183 0.78797 1.18060 1.19707 1.19474 1.19672 0.98065 0.90880 1.37837 0.89540 1.18617 0.92105 0.93695 0.89311 1.21316 0.98663 0.96959 0.99865 1.21298 0.99322 0.93336 1.00399 1.18720 0.97494 0.90559 1.06440 1.18285 0.93545 0.91338 0.96436 1.20929 0.95594 0.97157 1.00133 1.20242 1.00755 0.90480 1.05807 1.17765 0.92700 0.86670 1.01890 1.18366 0.91871 0.85916 1.02976 1.20496 1.00919 0.88266 1.02099 1.86054 1.65534 1.13472 1.57913 1.23154 0.94930 0.87237 0.97893 1.22105 0.94991 0.88400 0.98074 1.44313 1.43476 1.04056 1.47897 1.66957 1.06664 1.31920 1.10141 1.22454 1.02624 0.87859 1.05198 0.90348 0.85580 0.88042 0.85840 0.86530 0.84525 0.92068 0.87423 0.89578 0.91763 0.76396 0.85375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.98 10.91 55.55 0.61 -18.37 16 2 C 0.07 1.69 5.18 -17.33 -0.09 1.60 16 3 Si 0.91 17.46 29.59 -169.99 -5.03 12.43 16 4 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 5 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 6 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 7 C -0.44 -10.90 9.06 -37.88 -0.34 -11.25 16 8 H 0.09 2.05 7.90 -52.49 -0.41 1.63 16 9 C 0.07 1.75 5.59 -106.64 -0.60 1.15 16 10 C -0.14 -3.62 8.73 -39.02 -0.34 -3.96 16 11 C -0.12 -2.89 9.37 -39.54 -0.37 -3.27 16 12 C 0.00 0.05 6.73 -82.76 -0.56 -0.51 16 13 C 0.01 0.13 5.88 -104.88 -0.62 -0.48 16 14 C -0.12 -2.13 9.40 -39.18 -0.37 -2.50 16 15 C -0.15 -2.36 9.91 -39.49 -0.39 -2.75 16 16 C 0.11 1.73 6.51 -83.39 -0.54 1.18 16 17 C 0.06 1.01 6.51 -39.08 -0.25 0.75 16 18 C -0.10 -1.99 9.48 -39.03 -0.37 -2.36 16 19 O -0.32 -5.14 10.32 -19.64 -0.20 -5.34 16 20 C 0.04 0.49 7.19 37.43 0.27 0.76 16 21 C 0.09 0.87 7.35 -3.35 -0.02 0.85 16 22 N -0.76 -9.05 5.90 -57.56 -0.34 -9.39 16 23 N -0.45 -11.26 9.38 -9.12 -0.09 -11.35 16 24 C -0.02 -0.41 10.97 -16.77 -0.18 -0.60 16 25 H 0.29 6.25 8.30 -40.82 -0.34 5.91 16 26 H 0.13 3.21 6.21 -52.49 -0.33 2.88 16 27 H 0.10 2.08 6.17 -52.49 -0.32 1.75 16 28 H 0.12 2.06 6.16 -52.49 -0.32 1.74 16 29 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 30 H 0.14 2.90 7.52 -52.49 -0.39 2.51 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.40 3.78 8.90 -40.82 -0.36 3.41 16 36 H 0.13 2.95 8.06 -52.49 -0.42 2.53 16 LS Contribution 305.13 15.07 4.60 4.60 Total: -1.00 -29.15 305.13 -9.05 -38.20 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -3.82 Total: 10.58 kcal Atomic # 6 Polarization: -16.59 SS G_CDS: -4.78 Total: -21.37 kcal Atomic # 7 Polarization: -39.29 SS G_CDS: 0.18 Total: -39.10 kcal Atomic # 8 Polarization: -5.14 SS G_CDS: -0.20 Total: -5.34 kcal Atomic # 14 Polarization: 17.46 SS G_CDS: -5.03 Total: 12.43 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.15 -9.05 -38.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241437648.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.207 kcal (2) G-P(sol) polarization free energy of solvation -29.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds