Wall clock time and date at job start Tue Mar 31 2020 05:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30742 * 1 3 3 Si 1.86804 * 120.00320 * 2 1 4 4 H 1.48493 * 109.46996 * 270.00170 * 3 2 1 5 5 H 1.48501 * 109.46888 * 30.00541 * 3 2 1 6 6 H 1.48506 * 109.46859 * 150.00203 * 3 2 1 7 7 C 1.40050 * 120.00028 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00330 * 179.97438 * 7 2 1 9 9 C 1.40900 * 119.99540 * 359.97438 * 7 2 1 10 10 C 1.40932 * 119.67032 * 180.02562 * 9 7 2 11 11 C 1.36591 * 119.26437 * 180.02562 * 10 9 7 12 12 C 1.40376 * 118.60324 * 359.97438 * 11 10 9 13 13 C 1.47784 * 120.35230 * 179.97438 * 12 11 10 14 14 C 1.39786 * 120.00674 * 359.97411 * 13 12 11 15 15 C 1.37802 * 119.91595 * 180.08994 * 14 13 12 16 16 C 1.38947 * 120.07216 * 359.95315 * 15 14 13 17 17 C 1.39603 * 120.38066 * 359.68056 * 16 15 14 18 18 C 1.38231 * 119.69010 * 0.67434 * 17 16 15 19 19 O 1.35955 * 120.76723 * 180.09714 * 17 16 15 20 20 C 1.42962 * 117.79297 * 340.22344 * 19 17 16 21 21 C 1.53533 * 108.76559 * 49.15063 * 20 19 17 22 22 N 1.39969 * 119.91318 * 179.80467 * 16 15 14 23 23 C 1.40189 * 119.29801 * 0.25584 * 12 11 10 24 24 N 1.31171 * 120.67093 * 359.49595 * 23 12 11 25 25 H 0.97008 * 119.99686 * 359.97438 * 1 2 3 26 26 H 1.07994 * 120.36630 * 0.02562 * 10 9 7 27 27 H 1.08002 * 120.69544 * 180.02562 * 11 10 9 28 28 H 1.08004 * 120.04171 * 0.07775 * 14 13 12 29 29 H 1.07994 * 119.96001 * 179.97438 * 15 14 13 30 30 H 1.08002 * 120.02573 * 179.62761 * 18 17 16 31 31 H 1.08996 * 109.58864 * 289.36637 * 20 19 17 32 32 H 1.09007 * 109.58753 * 168.93516 * 20 19 17 33 33 H 1.08995 * 109.82683 * 182.25441 * 21 20 19 34 34 H 1.08999 * 109.82422 * 61.31709 * 21 20 19 35 35 H 0.97002 * 121.10877 * 346.18892 * 22 16 15 36 36 H 1.07993 * 119.66507 * 179.72478 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4890 2.0464 -1.4000 5 1 1.4390 2.6526 0.7002 6 1 3.5391 1.4400 0.7000 7 6 2.0077 -1.2129 -0.0005 8 1 3.0877 -1.2129 -0.0010 9 6 1.3031 -2.4330 -0.0005 10 6 2.0147 -3.6495 -0.0005 11 6 1.3233 -4.8275 -0.0011 12 6 -0.0798 -4.7833 -0.0011 13 6 -0.8664 -6.0344 -0.0022 14 6 -0.2137 -7.2705 -0.0038 15 6 -0.9491 -8.4359 -0.0068 16 6 -2.3375 -8.3831 -0.0071 17 6 -2.9973 -7.1529 0.0022 18 6 -2.2627 -5.9819 -0.0023 19 8 -4.3555 -7.0920 0.0040 20 6 -5.0751 -8.2481 -0.4315 21 6 -4.5178 -9.4798 0.2962 22 7 -3.0812 -9.5689 -0.0142 23 6 -0.7269 -3.5397 -0.0060 24 7 -0.0350 -2.4253 -0.0006 25 1 -0.4850 0.8401 0.0004 26 1 3.0946 -3.6503 -0.0001 27 1 1.8451 -5.7731 -0.0007 28 1 0.8655 -7.3121 -0.0030 29 1 -0.4456 -9.3913 -0.0085 30 1 -2.7675 -5.0272 -0.0012 31 1 -4.9510 -8.3720 -1.5072 32 1 -6.1326 -8.1310 -0.1945 33 1 -5.0279 -10.3776 -0.0528 34 1 -4.6576 -9.3686 1.3715 35 1 -2.6640 -10.4208 -0.2172 36 1 -1.8061 -3.4987 -0.0105 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241454926.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:13 Heat of formation + Delta-G solvation = 26.712084 kcal Electronic energy + Delta-G solvation = -20600.169383 eV Core-core repulsion = 17435.136321 eV Total energy + Delta-G solvation = -3165.033062 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.30113 -38.40405 -36.85319 -35.18356 -33.74505 -31.56868 -30.76506 -29.95297 -29.14571 -27.01241 -25.30486 -23.74965 -22.88967 -21.58355 -20.82852 -19.72702 -17.61336 -17.47445 -17.20661 -16.27547 -15.62757 -15.12939 -14.87098 -14.40586 -14.24125 -13.99581 -13.68510 -13.22996 -13.12792 -12.84689 -12.63887 -12.24495 -12.21462 -11.71825 -11.39038 -11.30826 -11.02920 -10.84337 -10.74201 -10.42281 -10.36158 -10.00288 -9.96207 -9.35351 -8.34378 -8.09708 -7.78168 -7.61298 -6.68564 -6.51627 -4.55001 1.70745 1.90302 2.80316 3.03048 3.05889 3.08082 3.19013 3.37002 3.63684 3.85163 4.35792 4.62474 4.78352 4.90752 4.99282 5.14206 5.32389 5.58701 5.64299 5.73444 5.87138 5.88980 5.90034 6.10633 6.24420 6.35926 6.58607 6.68224 6.72581 6.79331 7.00093 7.10007 7.17654 7.24498 7.35210 7.63144 7.75986 7.79374 7.92407 7.96799 8.12583 8.52753 8.82399 10.02693 10.18436 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.038480 B = 0.003477 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.479367 B = 8051.442986 C = 8744.620324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.701 5.701 2 C 0.063 3.937 3 Si 0.911 3.089 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.260 1.260 7 C -0.411 4.411 8 H 0.087 0.913 9 C 0.251 3.749 10 C -0.272 4.272 11 C -0.037 4.037 12 C -0.269 4.269 13 C 0.021 3.979 14 C -0.134 4.134 15 C -0.142 4.142 16 C 0.096 3.904 17 C 0.069 3.931 18 C -0.133 4.133 19 O -0.316 6.316 20 C 0.045 3.955 21 C 0.091 3.909 22 N -0.762 5.762 23 C 0.154 3.846 24 N -0.488 5.488 25 H 0.276 0.724 26 H 0.100 0.900 27 H 0.099 0.901 28 H 0.120 0.880 29 H 0.114 0.886 30 H 0.129 0.871 31 H 0.061 0.939 32 H 0.108 0.892 33 H 0.085 0.915 34 H 0.063 0.937 35 H 0.400 0.600 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.320 -13.390 -0.540 14.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.320 5.320 2 C -0.164 4.164 3 Si 0.735 3.265 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.184 1.184 7 C -0.441 4.441 8 H 0.105 0.895 9 C 0.128 3.872 10 C -0.295 4.295 11 C -0.060 4.060 12 C -0.274 4.274 13 C 0.019 3.981 14 C -0.153 4.153 15 C -0.164 4.164 16 C -0.003 4.003 17 C 0.021 3.979 18 C -0.152 4.152 19 O -0.231 6.231 20 C -0.032 4.032 21 C -0.035 4.035 22 N -0.399 5.399 23 C -0.015 4.015 24 N -0.200 5.200 25 H 0.088 0.912 26 H 0.118 0.882 27 H 0.117 0.883 28 H 0.138 0.862 29 H 0.132 0.868 30 H 0.147 0.853 31 H 0.080 0.920 32 H 0.126 0.874 33 H 0.104 0.896 34 H 0.082 0.918 35 H 0.235 0.765 36 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.156 -12.156 -0.434 14.113 hybrid contribution 0.942 -0.867 -0.150 1.289 sum -6.214 -13.023 -0.585 14.442 Atomic orbital electron populations 1.70144 1.07323 1.28242 1.26332 1.26181 0.95006 1.01422 0.93770 0.86264 0.80464 0.80416 0.79394 1.19227 1.19925 1.18386 1.19736 0.94596 0.89622 1.40100 0.89505 1.18667 0.88593 0.91932 0.87973 1.21410 0.98820 0.93589 1.15655 1.20638 0.93018 0.96709 0.95666 1.18978 0.93017 0.92278 1.23142 1.18469 0.91057 0.92741 0.95874 1.20896 0.99363 0.91146 1.03880 1.20270 0.90911 0.98329 1.06914 1.17703 0.91231 0.85551 1.05782 1.18306 0.81620 0.92401 1.05552 1.20421 0.92792 0.95964 1.06070 1.86035 1.15992 1.38228 1.82822 1.23167 0.96122 0.85357 0.98528 1.22085 0.82702 0.98902 0.99827 1.44272 1.07279 1.06549 1.81788 1.22812 0.98715 0.87917 0.92031 1.68810 1.07036 1.26362 1.17776 0.91234 0.88218 0.88324 0.86240 0.86794 0.85329 0.92027 0.87429 0.89628 0.91842 0.76474 0.85963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -18.26 11.44 55.55 0.64 -17.62 16 2 C 0.06 1.57 5.50 -17.34 -0.10 1.47 16 3 Si 0.91 17.99 29.56 -169.99 -5.02 12.97 16 4 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 5 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 6 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 7 C -0.41 -10.72 9.11 -37.90 -0.35 -11.06 16 8 H 0.09 2.09 7.85 -52.49 -0.41 1.68 16 9 C 0.25 6.79 6.55 -84.98 -0.56 6.23 16 10 C -0.27 -6.59 9.76 -39.16 -0.38 -6.97 16 11 C -0.04 -0.83 9.46 -39.37 -0.37 -1.20 16 12 C -0.27 -6.11 5.92 -104.46 -0.62 -6.73 16 13 C 0.02 0.42 5.88 -104.86 -0.62 -0.19 16 14 C -0.13 -2.35 9.43 -39.16 -0.37 -2.72 16 15 C -0.14 -2.20 9.91 -39.48 -0.39 -2.59 16 16 C 0.10 1.50 6.51 -83.37 -0.54 0.96 16 17 C 0.07 1.20 6.51 -39.07 -0.25 0.95 16 18 C -0.13 -2.55 9.35 -39.03 -0.36 -2.92 16 19 O -0.32 -5.04 10.32 -19.60 -0.20 -5.24 16 20 C 0.05 0.49 7.19 37.43 0.27 0.76 16 21 C 0.09 0.87 7.35 -3.35 -0.02 0.85 16 22 N -0.76 -9.02 5.90 -57.56 -0.34 -9.36 16 23 C 0.15 3.79 10.60 -17.10 -0.18 3.61 16 24 N -0.49 -13.42 7.83 -10.83 -0.08 -13.50 16 25 H 0.28 6.48 8.29 -40.82 -0.34 6.14 16 26 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 27 H 0.10 1.89 6.28 -52.49 -0.33 1.57 16 28 H 0.12 1.95 6.24 -52.48 -0.33 1.62 16 29 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 30 H 0.13 2.44 6.20 -52.49 -0.33 2.12 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.40 3.78 8.90 -40.82 -0.36 3.42 16 36 H 0.12 2.75 6.20 -52.49 -0.33 2.42 16 LS Contribution 304.03 15.07 4.58 4.58 Total: -1.00 -30.31 304.03 -9.03 -39.35 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -3.75 Total: 8.40 kcal Atomic # 6 Polarization: -14.72 SS G_CDS: -4.85 Total: -19.56 kcal Atomic # 7 Polarization: -40.70 SS G_CDS: 0.21 Total: -40.49 kcal Atomic # 8 Polarization: -5.04 SS G_CDS: -0.20 Total: -5.24 kcal Atomic # 14 Polarization: 17.99 SS G_CDS: -5.02 Total: 12.97 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.31 -9.03 -39.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241454926.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.060 kcal (2) G-P(sol) polarization free energy of solvation -30.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds