Wall clock time and date at job start Tue Mar 31 2020 05:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86797 * 120.00377 * 2 1 4 4 H 1.48498 * 109.47417 * 270.00236 * 3 2 1 5 5 H 1.48505 * 109.46739 * 30.00101 * 3 2 1 6 6 H 1.48494 * 109.46976 * 149.99708 * 3 2 1 7 7 C 1.40045 * 119.99480 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00098 * 163.17295 * 7 2 1 9 9 C 1.41525 * 120.00120 * 343.16401 * 7 2 1 10 10 C 1.41163 * 120.98772 * 336.09816 * 9 7 2 11 11 C 1.37715 * 119.08125 * 180.02562 * 10 9 7 12 12 N 1.31930 * 121.16404 * 359.72635 * 11 10 9 13 13 C 1.32812 * 122.20167 * 0.57018 * 12 11 10 14 14 C 1.48303 * 119.61636 * 179.70276 * 13 12 11 15 15 C 1.39401 * 120.09854 * 179.75493 * 14 13 12 16 16 C 1.37942 * 120.16875 * 180.02562 * 15 14 13 17 17 C 1.38826 * 120.22533 * 0.04405 * 16 15 14 18 18 C 1.39378 * 119.73905 * 359.80272 * 17 16 15 19 19 C 1.38338 * 120.28688 * 0.24434 * 18 17 16 20 20 N 1.40430 * 119.73678 * 180.26520 * 18 17 16 21 21 C 1.47286 * 117.70620 * 346.16628 * 20 18 17 22 22 C 1.53528 * 107.58082 * 41.99498 * 21 20 18 23 23 O 1.35925 * 119.52564 * 179.57798 * 17 16 15 24 24 C 1.38952 * 120.76170 * 359.43380 * 13 12 11 25 25 H 0.97000 * 119.99450 * 359.97438 * 1 2 3 26 26 H 1.08003 * 120.45366 * 0.02562 * 10 9 7 27 27 H 1.08002 * 119.41503 * 179.97438 * 11 10 9 28 28 H 1.07999 * 119.91716 * 0.05315 * 15 14 13 29 29 H 1.07997 * 119.89382 * 180.02562 * 16 15 14 30 30 H 1.07996 * 120.10805 * 179.88116 * 19 18 17 31 31 H 0.96998 * 121.14313 * 166.18633 * 20 18 17 32 32 H 1.09001 * 109.83605 * 282.47578 * 21 20 18 33 33 H 1.08999 * 109.89154 * 161.54546 * 21 20 18 34 34 H 1.09004 * 109.58233 * 61.58780 * 22 21 20 35 35 H 1.09004 * 109.58379 * 181.98602 * 22 21 20 36 36 H 1.08001 * 120.61601 * 180.24971 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 2.4890 2.0464 -1.4000 5 1 1.4389 2.6526 0.7001 6 1 3.5390 1.4400 0.7001 7 6 2.0075 -1.2129 -0.0005 8 1 3.0529 -1.2329 -0.2713 9 6 1.3453 -2.4124 0.3539 10 6 0.1907 -2.3925 1.1657 11 6 -0.4222 -3.5832 1.4870 12 7 0.0480 -4.7341 1.0455 13 6 1.1335 -4.8097 0.2839 14 6 1.6157 -6.1349 -0.1752 15 6 2.7510 -6.2255 -0.9791 16 6 3.2005 -7.4573 -1.4074 17 6 2.5251 -8.6137 -1.0415 18 6 1.3916 -8.5265 -0.2351 19 6 0.9357 -7.2938 0.1966 20 7 0.7117 -9.6966 0.1396 21 6 1.0367 -10.9385 -0.5824 22 6 2.5606 -10.9848 -0.7628 23 8 2.9756 -9.8193 -1.4786 24 6 1.8191 -3.6612 -0.0923 25 1 -0.4849 0.8401 0.0004 26 1 -0.2065 -1.4565 1.5298 27 1 -1.3057 -3.5743 2.1082 28 1 3.2801 -5.3292 -1.2670 29 1 4.0807 -7.5225 -2.0297 30 1 0.0560 -7.2295 0.8197 31 1 0.0506 -9.6872 0.8494 32 1 0.5487 -10.9382 -1.5571 33 1 0.7063 -11.8012 -0.0039 34 1 3.0437 -11.0049 0.2142 35 1 2.8349 -11.8767 -1.3263 36 1 2.6992 -3.7252 -0.7150 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241468096.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:00 Heat of formation + Delta-G solvation = 17.395059 kcal Electronic energy + Delta-G solvation = -20613.532899 eV Core-core repulsion = 17448.095821 eV Total energy + Delta-G solvation = -3165.437078 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.38939 -38.52009 -36.87607 -35.17615 -34.13462 -31.48109 -30.86442 -30.18864 -28.53654 -26.71785 -25.87073 -24.15402 -22.64607 -21.81228 -20.83038 -19.73808 -17.84058 -17.57239 -16.91936 -16.23774 -15.51983 -15.21407 -14.65876 -14.47754 -14.32139 -13.94838 -13.76666 -13.43476 -13.23618 -13.11305 -12.76192 -12.53493 -12.20898 -11.66550 -11.48310 -11.36478 -11.04713 -10.95724 -10.81896 -10.44648 -10.31171 -9.92313 -9.79994 -9.43026 -8.40830 -8.07234 -7.99428 -7.41801 -6.92742 -6.81992 -4.61433 1.52687 1.89919 2.73902 2.91787 3.01347 3.05747 3.21705 3.32269 3.56504 3.84067 4.27055 4.57539 4.71089 4.88622 4.94934 5.09807 5.24643 5.29224 5.59734 5.67216 5.70541 5.82892 5.91924 6.05723 6.27517 6.45741 6.65304 6.72452 6.82398 6.89101 6.98945 7.09830 7.20098 7.27220 7.35727 7.49226 7.69662 7.82156 7.83928 8.09018 8.42959 8.71128 8.72392 9.56230 10.04785 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.037821 B = 0.003541 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.147988 B = 7906.273286 C = 8547.743611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.078 3.922 3 Si 0.912 3.088 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.456 4.456 8 H 0.082 0.918 9 C 0.126 3.874 10 C -0.210 4.210 11 C 0.086 3.914 12 N -0.564 5.564 13 C 0.154 3.846 14 C -0.001 4.001 15 C -0.123 4.123 16 C -0.111 4.111 17 C 0.044 3.956 18 C 0.128 3.872 19 C -0.124 4.124 20 N -0.760 5.760 21 C 0.090 3.910 22 C 0.045 3.955 23 O -0.317 6.317 24 C -0.250 4.250 25 H 0.283 0.717 26 H 0.126 0.874 27 H 0.121 0.879 28 H 0.132 0.868 29 H 0.127 0.873 30 H 0.135 0.865 31 H 0.405 0.595 32 H 0.065 0.935 33 H 0.088 0.912 34 H 0.062 0.938 35 H 0.108 0.892 36 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.612 -14.266 -0.475 14.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.142 4.142 3 Si 0.736 3.264 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.487 4.487 8 H 0.100 0.900 9 C 0.118 3.882 10 C -0.232 4.232 11 C -0.066 4.066 12 N -0.279 5.279 13 C 0.020 3.980 14 C -0.002 4.002 15 C -0.143 4.143 16 C -0.130 4.130 17 C -0.004 4.004 18 C 0.029 3.971 19 C -0.147 4.147 20 N -0.397 5.397 21 C -0.036 4.036 22 C -0.032 4.032 23 O -0.232 6.232 24 C -0.273 4.273 25 H 0.094 0.906 26 H 0.144 0.856 27 H 0.139 0.861 28 H 0.150 0.850 29 H 0.145 0.855 30 H 0.152 0.848 31 H 0.241 0.759 32 H 0.083 0.917 33 H 0.106 0.894 34 H 0.080 0.920 35 H 0.126 0.874 36 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 2.123 -15.047 -0.502 15.204 hybrid contribution 0.204 1.537 0.192 1.562 sum 2.327 -13.510 -0.311 13.712 Atomic orbital electron populations 1.69770 1.07750 1.29614 1.33972 1.25974 0.94762 1.01578 0.91878 0.86252 0.80642 0.80166 0.79384 1.19312 1.19969 1.18289 1.19599 0.97909 0.90770 1.40414 0.89972 1.17766 0.90736 0.92039 0.87625 1.22257 1.00315 0.98142 1.02502 1.21939 0.98129 0.88518 0.98035 1.67262 1.14577 1.29196 1.16822 1.19076 0.92578 0.90620 0.95680 1.18529 0.94045 0.91716 0.95953 1.20941 0.97239 0.96809 0.99349 1.20215 1.00240 0.89692 1.02847 1.18448 0.93953 0.85354 1.02662 1.17772 0.92284 0.87473 0.99547 1.20639 1.01483 0.88983 1.03548 1.44506 1.47313 1.05416 1.42483 1.22119 0.95768 0.87930 0.97788 1.23168 0.94841 0.87605 0.97559 1.85988 1.70663 1.12510 1.54022 1.21890 1.04463 0.92837 1.08116 0.90562 0.85608 0.86110 0.85007 0.85514 0.84762 0.75937 0.91700 0.89402 0.91958 0.87371 0.87570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.69 10.92 55.55 0.61 -19.08 16 2 C 0.08 1.89 5.20 -17.34 -0.09 1.80 16 3 Si 0.91 18.00 29.59 -169.99 -5.03 12.97 16 4 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 5 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 6 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 7 C -0.46 -11.77 9.12 -37.65 -0.34 -12.11 16 8 H 0.08 2.02 7.90 -52.48 -0.41 1.60 16 9 C 0.13 3.33 5.60 -106.56 -0.60 2.73 16 10 C -0.21 -5.39 8.79 -38.66 -0.34 -5.73 16 11 C 0.09 2.07 11.15 -17.70 -0.20 1.87 16 12 N -0.56 -13.64 9.40 -9.95 -0.09 -13.73 16 13 C 0.15 3.65 6.73 -83.04 -0.56 3.09 16 14 C 0.00 -0.01 5.88 -104.88 -0.62 -0.63 16 15 C -0.12 -2.22 9.40 -39.26 -0.37 -2.59 16 16 C -0.11 -1.80 9.95 -39.47 -0.39 -2.20 16 17 C 0.04 0.71 6.52 -38.94 -0.25 0.46 16 18 C 0.13 2.09 6.50 -83.46 -0.54 1.55 16 19 C -0.12 -2.30 9.45 -39.10 -0.37 -2.67 16 20 N -0.76 -9.57 5.93 -57.63 -0.34 -9.91 16 21 C 0.09 0.85 7.36 -3.34 -0.02 0.83 16 22 C 0.05 0.45 7.18 37.43 0.27 0.72 16 23 O -0.32 -4.57 10.32 -19.51 -0.20 -4.77 16 24 C -0.25 -6.14 9.25 -38.34 -0.35 -6.49 16 25 H 0.28 6.42 8.29 -40.82 -0.34 6.08 16 26 H 0.13 3.27 6.20 -52.48 -0.33 2.94 16 27 H 0.12 2.53 8.06 -52.49 -0.42 2.11 16 28 H 0.13 2.26 6.16 -52.49 -0.32 1.94 16 29 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 30 H 0.13 2.52 7.53 -52.49 -0.40 2.12 16 31 H 0.40 4.42 8.90 -40.82 -0.36 4.05 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.11 2.39 6.18 -52.49 -0.32 2.06 16 LS Contribution 305.40 15.07 4.60 4.60 Total: -1.00 -29.55 305.40 -9.06 -38.60 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -3.82 Total: 10.71 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: -4.78 Total: -19.38 kcal Atomic # 7 Polarization: -42.90 SS G_CDS: 0.17 Total: -42.73 kcal Atomic # 8 Polarization: -4.57 SS G_CDS: -0.20 Total: -4.77 kcal Atomic # 14 Polarization: 18.00 SS G_CDS: -5.03 Total: 12.97 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.55 -9.06 -38.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241468096.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.999 kcal (2) G-P(sol) polarization free energy of solvation -29.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds