Wall clock time and date at job start Tue Mar 31 2020 05:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30758 * 1 3 3 Si 1.86803 * 120.00035 * 2 1 4 4 H 1.48497 * 109.46956 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.46955 * 120.00063 * 3 2 1 6 6 H 1.48499 * 109.46855 * 240.00249 * 3 2 1 7 7 C 1.40006 * 119.99811 * 179.72837 * 2 1 3 8 8 H 1.07997 * 119.99972 * 357.27821 * 7 2 1 9 9 C 1.41358 * 119.99995 * 177.28063 * 7 2 1 10 10 C 1.40717 * 119.76522 * 180.36712 * 9 7 2 11 11 C 1.38279 * 119.19430 * 179.74921 * 10 9 7 12 12 C 1.38708 * 118.69306 * 0.51770 * 11 10 9 13 13 C 1.39925 * 119.46453 * 359.72581 * 12 11 10 14 14 C 1.48227 * 119.60947 * 180.02562 * 13 12 11 15 15 C 1.39448 * 120.10810 * 5.01677 * 14 13 12 16 16 C 1.37914 * 120.16432 * 180.02562 * 15 14 13 17 17 C 1.38846 * 120.23460 * 0.02562 * 16 15 14 18 18 C 1.39418 * 119.74098 * 359.86418 * 17 16 15 19 19 C 1.38308 * 120.28499 * 359.93130 * 18 17 16 20 20 N 1.40422 * 119.73179 * 180.38969 * 18 17 16 21 21 C 1.47287 * 117.70019 * 346.02805 * 20 18 17 22 22 C 1.53529 * 107.57966 * 42.05535 * 21 20 18 23 23 O 1.35906 * 119.52988 * 179.61831 * 17 16 15 24 24 N 1.32274 * 120.77390 * 0.02562 * 13 12 11 25 25 H 0.96997 * 119.99745 * 174.46422 * 1 2 3 26 26 H 1.07991 * 120.40604 * 359.97438 * 10 9 7 27 27 H 1.07995 * 120.65726 * 180.21858 * 11 10 9 28 28 H 1.08001 * 120.26694 * 179.70052 * 12 11 10 29 29 H 1.08001 * 119.91366 * 0.05198 * 15 14 13 30 30 H 1.08001 * 119.88415 * 180.02562 * 16 15 14 31 31 H 1.08001 * 120.10782 * 180.17474 * 19 18 17 32 32 H 0.97004 * 121.14640 * 166.01392 * 20 18 17 33 33 H 1.09003 * 109.83674 * 161.57519 * 21 20 18 34 34 H 1.09000 * 109.83704 * 282.53404 * 21 20 18 35 35 H 1.08998 * 109.58056 * 61.59270 * 22 21 20 36 36 H 1.08995 * 109.58669 * 182.00025 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6178 0.0000 4 1 1.2766 2.7464 0.0006 5 1 3.0953 1.6964 1.2125 6 1 3.0953 1.6964 -1.2125 7 6 2.0076 -1.2125 0.0057 8 1 1.4685 -2.1470 0.0546 9 6 3.4200 -1.2135 -0.0523 10 6 4.1182 -2.4352 -0.0541 11 6 5.4995 -2.4226 -0.1165 12 6 6.1528 -1.1999 -0.1645 13 6 5.4034 -0.0183 -0.1545 14 6 6.0982 1.2901 -0.2063 15 6 7.4821 1.3412 -0.3698 16 6 8.1298 2.5578 -0.4176 17 6 7.4087 3.7388 -0.3028 18 6 6.0247 3.6911 -0.1415 19 6 5.3691 2.4741 -0.0971 20 7 5.2946 4.8858 -0.0337 21 6 6.0462 6.1271 0.2185 22 6 7.3017 6.0965 -0.6645 23 8 8.0625 4.9295 -0.3440 24 7 4.0823 -0.0551 -0.0995 25 1 -0.4849 -0.8361 -0.0810 26 1 3.5817 -3.3714 -0.0109 27 1 6.0589 -3.3463 -0.1228 28 1 7.2312 -1.1603 -0.2088 29 1 8.0480 0.4257 -0.4596 30 1 9.2018 2.5921 -0.5448 31 1 4.2966 2.4406 0.0250 32 1 4.3287 4.8932 -0.1225 33 1 5.4327 6.9900 -0.0405 34 1 6.3337 6.1785 1.2687 35 1 7.0094 6.0650 -1.7141 36 1 7.9021 6.9867 -0.4770 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241468622.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:18 Heat of formation + Delta-G solvation = 19.511032 kcal Electronic energy + Delta-G solvation = -21377.750142 eV Core-core repulsion = 18212.404820 eV Total energy + Delta-G solvation = -3165.345323 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.46785 -38.85735 -37.03297 -35.21128 -33.87028 -31.82396 -31.34049 -30.34281 -29.03723 -27.04966 -25.36330 -24.26021 -22.96333 -21.67166 -21.12458 -19.60302 -18.39969 -17.94101 -17.12043 -16.51470 -15.79102 -15.32443 -14.93421 -14.59944 -14.32278 -14.04783 -13.84333 -13.56165 -13.30952 -13.06376 -12.87720 -12.44437 -12.42298 -11.89155 -11.59636 -11.43641 -10.99060 -10.88526 -10.65867 -10.42479 -9.96106 -9.86328 -9.58558 -9.38696 -8.73917 -8.41770 -7.75660 -7.59760 -7.27704 -7.05395 -4.82561 1.34447 1.80933 2.57723 2.72955 3.26124 3.45205 3.53948 3.60359 3.91829 4.15518 4.34443 4.57245 4.67614 4.89384 4.95891 5.04799 5.08207 5.27638 5.51864 5.57139 5.61280 5.64646 5.82432 5.85278 6.13393 6.18476 6.37266 6.44467 6.48516 6.55550 6.79578 7.00384 7.04154 7.15635 7.27873 7.37089 7.44536 7.63563 7.66002 7.78931 8.03612 8.25652 8.59028 9.39128 9.96140 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.019135 B = 0.006401 C = 0.004831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.911537 B = 4373.105878 C = 5794.903810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.041 3.959 3 Si 1.149 2.851 4 H -0.334 1.334 5 H -0.285 1.285 6 H -0.279 1.279 7 C -0.474 4.474 8 H 0.083 0.917 9 C 0.253 3.747 10 C -0.259 4.259 11 C -0.046 4.046 12 C -0.294 4.294 13 C 0.210 3.790 14 C -0.018 4.018 15 C -0.116 4.116 16 C -0.113 4.113 17 C 0.053 3.947 18 C 0.131 3.869 19 C -0.132 4.132 20 N -0.760 5.760 21 C 0.089 3.911 22 C 0.045 3.955 23 O -0.316 6.316 24 N -0.566 5.566 25 H 0.284 0.716 26 H 0.105 0.895 27 H 0.106 0.894 28 H 0.110 0.890 29 H 0.132 0.868 30 H 0.129 0.871 31 H 0.137 0.863 32 H 0.407 0.593 33 H 0.091 0.909 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.913 9.973 -0.923 15.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.180 4.180 3 Si 0.987 3.013 4 H -0.268 1.268 5 H -0.214 1.214 6 H -0.208 1.208 7 C -0.506 4.506 8 H 0.101 0.899 9 C 0.130 3.870 10 C -0.281 4.281 11 C -0.070 4.070 12 C -0.317 4.317 13 C 0.070 3.930 14 C -0.020 4.020 15 C -0.137 4.137 16 C -0.132 4.132 17 C 0.005 3.995 18 C 0.032 3.968 19 C -0.154 4.154 20 N -0.397 5.397 21 C -0.037 4.037 22 C -0.032 4.032 23 O -0.230 6.230 24 N -0.285 5.285 25 H 0.095 0.905 26 H 0.124 0.876 27 H 0.124 0.876 28 H 0.128 0.872 29 H 0.150 0.850 30 H 0.147 0.853 31 H 0.154 0.846 32 H 0.243 0.757 33 H 0.109 0.891 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 11.386 12.373 -0.775 16.832 hybrid contribution -0.178 -2.684 -0.115 2.693 sum 11.207 9.688 -0.890 14.841 Atomic orbital electron populations 1.70649 1.08148 1.32830 1.31067 1.27813 0.95341 1.06270 0.88536 0.82233 0.69688 0.69939 0.79437 1.26787 1.21436 1.20761 1.20763 0.90291 0.96347 1.43171 0.89891 1.18555 0.93831 0.86724 0.87928 1.21672 0.93944 0.98086 1.14434 1.20919 0.94289 0.96513 0.95255 1.21114 0.98747 0.92296 1.19513 1.19286 0.89338 0.90919 0.93411 1.18487 0.92402 0.91417 0.99652 1.20851 0.93188 0.97059 1.02576 1.20198 0.99683 0.89318 1.04018 1.18476 0.89244 0.85727 1.06048 1.17771 0.90404 0.87179 1.01491 1.21224 1.01256 0.89571 1.03353 1.44588 1.08277 1.03747 1.83081 1.22159 0.93982 0.87893 0.99619 1.23204 0.93585 0.87479 0.98948 1.85980 1.37080 1.13528 1.86453 1.66241 1.07840 1.28370 1.26072 0.90529 0.87649 0.87629 0.87215 0.84981 0.85283 0.84620 0.75700 0.89079 0.91471 0.91759 0.87191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.14 13.65 55.55 0.76 -21.38 16 2 C 0.04 1.14 5.52 -17.35 -0.10 1.04 16 3 Si 1.15 28.71 22.00 -169.99 -3.74 24.97 16 4 H -0.33 -8.09 7.11 56.52 0.40 -7.69 16 5 H -0.29 -7.15 6.62 56.52 0.37 -6.78 16 6 H -0.28 -6.94 6.32 56.52 0.36 -6.59 16 7 C -0.47 -13.06 9.58 -37.73 -0.36 -13.42 16 8 H 0.08 2.26 8.06 -52.49 -0.42 1.84 16 9 C 0.25 6.70 6.43 -85.01 -0.55 6.15 16 10 C -0.26 -6.08 9.83 -38.63 -0.38 -6.46 16 11 C -0.05 -0.96 10.15 -39.39 -0.40 -1.36 16 12 C -0.29 -6.11 9.47 -38.78 -0.37 -6.48 16 13 C 0.21 4.87 6.73 -82.94 -0.56 4.31 16 14 C -0.02 -0.37 5.87 -104.88 -0.62 -0.98 16 15 C -0.12 -1.96 9.40 -39.25 -0.37 -2.33 16 16 C -0.11 -1.75 9.95 -39.47 -0.39 -2.14 16 17 C 0.05 0.87 6.52 -38.92 -0.25 0.61 16 18 C 0.13 2.30 6.50 -83.45 -0.54 1.75 16 19 C -0.13 -2.71 9.16 -39.09 -0.36 -3.06 16 20 N -0.76 -10.83 5.93 -57.63 -0.34 -11.18 16 21 C 0.09 0.91 7.36 -3.34 -0.02 0.88 16 22 C 0.04 0.46 7.18 37.43 0.27 0.72 16 23 O -0.32 -4.49 10.32 -19.45 -0.20 -4.69 16 24 N -0.57 -14.69 4.18 -7.68 -0.03 -14.72 16 25 H 0.28 7.42 8.73 -40.82 -0.36 7.07 16 26 H 0.11 2.30 8.06 -52.49 -0.42 1.87 16 27 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 28 H 0.11 1.92 6.20 -52.49 -0.33 1.59 16 29 H 0.13 1.93 6.19 -52.49 -0.32 1.61 16 30 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 31 H 0.14 3.00 2.10 -52.49 -0.11 2.89 16 32 H 0.41 5.45 8.90 -40.82 -0.36 5.08 16 33 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 292.69 15.07 4.41 4.41 Total: -1.00 -30.93 292.69 -7.87 -38.80 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -3.73 Total: 4.53 kcal Atomic # 6 Polarization: -15.74 SS G_CDS: -5.00 Total: -20.74 kcal Atomic # 7 Polarization: -47.66 SS G_CDS: 0.38 Total: -47.28 kcal Atomic # 8 Polarization: -4.49 SS G_CDS: -0.20 Total: -4.69 kcal Atomic # 14 Polarization: 28.71 SS G_CDS: -3.74 Total: 24.97 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -30.93 -7.87 -38.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241468622.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.309 kcal (2) G-P(sol) polarization free energy of solvation -30.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds