Wall clock time and date at job start Tue Mar 31 2020 05:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86804 * 119.99718 * 2 1 4 4 H 1.48500 * 109.46857 * 275.25967 * 3 2 1 5 5 H 1.48499 * 109.47224 * 35.26199 * 3 2 1 6 6 H 1.48501 * 109.46886 * 155.26149 * 3 2 1 7 7 C 1.40056 * 120.00062 * 180.27508 * 2 1 3 8 8 H 1.07999 * 120.00113 * 173.24994 * 7 2 1 9 9 C 1.40928 * 119.99941 * 353.25930 * 7 2 1 10 10 C 1.40915 * 119.67451 * 186.16414 * 9 7 2 11 11 C 1.36614 * 119.26453 * 179.97438 * 10 9 7 12 12 C 1.40346 * 118.60405 * 359.97438 * 11 10 9 13 13 C 1.47838 * 120.35391 * 180.02562 * 12 11 10 14 14 C 1.39748 * 120.12074 * 359.97438 * 13 12 11 15 15 C 1.37811 * 120.14544 * 180.02562 * 14 13 12 16 16 C 1.38963 * 120.24735 * 359.97438 * 15 14 13 17 17 C 1.39553 * 119.77863 * 359.87117 * 16 15 14 18 18 C 1.38204 * 120.30305 * 359.95568 * 17 16 15 19 19 N 1.40383 * 119.72709 * 180.38464 * 17 16 15 20 20 C 1.47290 * 117.69528 * 346.02582 * 19 17 16 21 21 C 1.53528 * 107.58273 * 42.06576 * 20 19 17 22 22 O 1.35873 * 119.51145 * 179.62227 * 16 15 14 23 23 C 1.40166 * 119.29689 * 359.97438 * 12 11 10 24 24 N 1.31174 * 120.67740 * 359.74336 * 23 12 11 25 25 H 0.96998 * 120.00142 * 359.72784 * 1 2 3 26 26 H 1.08007 * 120.37103 * 359.94889 * 10 9 7 27 27 H 1.07997 * 120.69999 * 179.97438 * 11 10 9 28 28 H 1.07995 * 119.92471 * 0.06939 * 14 13 12 29 29 H 1.08001 * 119.87590 * 180.02562 * 15 14 13 30 30 H 1.08004 * 120.11622 * 180.15236 * 18 17 16 31 31 H 0.96999 * 121.15279 * 166.00460 * 19 17 16 32 32 H 1.09002 * 109.83303 * 161.58570 * 20 19 17 33 33 H 1.09000 * 109.83417 * 282.54566 * 20 19 17 34 34 H 1.09006 * 109.58133 * 61.57044 * 21 20 19 35 35 H 1.09002 * 109.58153 * 181.96295 * 21 20 19 36 36 H 1.07993 * 119.65983 * 179.97438 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 2.3776 2.1106 -1.3942 5 1 1.4988 2.6181 0.8083 6 1 3.5901 1.4107 0.5859 7 6 2.0077 -1.2129 -0.0058 8 1 3.0821 -1.2156 -0.1158 9 6 1.3104 -2.4298 0.1316 10 6 2.0291 -3.6355 0.2558 11 6 1.3446 -4.8103 0.3891 12 6 -0.0583 -4.7733 0.3981 13 6 -0.8377 -6.0214 0.5407 14 6 -0.1804 -7.2481 0.6672 15 6 -0.9064 -8.4119 0.7997 16 6 -2.2955 -8.3732 0.8089 17 6 -2.9556 -7.1498 0.6860 18 6 -2.2342 -5.9781 0.5564 19 7 -4.3588 -7.1111 0.7035 20 6 -5.0809 -8.3839 0.5364 21 6 -4.3528 -9.4438 1.3752 22 8 -2.9965 -9.5305 0.9326 23 6 -0.7127 -3.5402 0.2714 24 7 -0.0275 -2.4282 0.1504 25 1 -0.4850 0.8400 0.0040 26 1 3.1091 -3.6311 0.2454 27 1 1.8720 -5.7478 0.4856 28 1 0.8990 -7.2840 0.6619 29 1 -0.3939 -9.3575 0.8976 30 1 -2.7481 -5.0327 0.4640 31 1 -4.8363 -6.2751 0.8220 32 1 -6.1073 -8.2756 0.8870 33 1 -5.0767 -8.6763 -0.5137 34 1 -4.3762 -9.1569 2.4266 35 1 -4.8413 -10.4098 1.2473 36 1 -1.7921 -3.5050 0.2771 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241482290.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:10 Heat of formation + Delta-G solvation = 25.496470 kcal Electronic energy + Delta-G solvation = -20597.646689 eV Core-core repulsion = 17432.560915 eV Total energy + Delta-G solvation = -3165.085775 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.26547 -38.44696 -36.82875 -35.11306 -33.82140 -31.59323 -30.79574 -30.18189 -28.86716 -26.91731 -25.48113 -23.71453 -22.90367 -21.59743 -20.91383 -19.55617 -17.86588 -17.50161 -17.00055 -16.30711 -15.68237 -15.09108 -14.89645 -14.37361 -14.21895 -13.90921 -13.76756 -13.27339 -13.07688 -12.82929 -12.67360 -12.27792 -12.26130 -11.76357 -11.38465 -11.35748 -11.04894 -10.87678 -10.72410 -10.46865 -10.31876 -10.04679 -9.86168 -9.44942 -8.52456 -8.18922 -7.65919 -7.41217 -6.83600 -6.57762 -4.60106 1.65081 1.98813 2.76892 3.00222 3.02616 3.05048 3.16353 3.38839 3.65686 3.81706 4.35084 4.63836 4.75104 4.94021 5.00245 5.16477 5.32726 5.62447 5.68920 5.78174 5.82569 5.85052 5.86145 6.09462 6.23817 6.35153 6.56437 6.68122 6.70051 6.79559 6.95712 7.09086 7.15899 7.29701 7.31550 7.58935 7.75454 7.78612 7.91956 7.95244 8.08468 8.48167 8.77761 9.97346 10.13243 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.038640 B = 0.003464 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.460302 B = 8081.285501 C = 8765.394653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.701 5.701 2 C 0.064 3.936 3 Si 0.911 3.089 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.410 4.410 8 H 0.088 0.912 9 C 0.252 3.748 10 C -0.272 4.272 11 C -0.035 4.035 12 C -0.273 4.273 13 C 0.047 3.953 14 C -0.161 4.161 15 C -0.094 4.094 16 C 0.011 3.989 17 C 0.150 3.850 18 C -0.181 4.181 19 N -0.761 5.761 20 C 0.090 3.910 21 C 0.046 3.954 22 O -0.319 6.319 23 C 0.156 3.844 24 N -0.490 5.490 25 H 0.276 0.724 26 H 0.101 0.899 27 H 0.100 0.900 28 H 0.122 0.878 29 H 0.120 0.880 30 H 0.122 0.878 31 H 0.404 0.596 32 H 0.086 0.914 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.106 0.894 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.404 -10.697 1.821 13.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.321 5.321 2 C -0.164 4.164 3 Si 0.735 3.265 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.439 4.439 8 H 0.106 0.894 9 C 0.129 3.871 10 C -0.294 4.294 11 C -0.058 4.058 12 C -0.278 4.278 13 C 0.045 3.955 14 C -0.181 4.181 15 C -0.113 4.113 16 C -0.036 4.036 17 C 0.051 3.949 18 C -0.203 4.203 19 N -0.398 5.398 20 C -0.036 4.036 21 C -0.031 4.031 22 O -0.234 6.234 23 C -0.013 4.013 24 N -0.201 5.201 25 H 0.088 0.912 26 H 0.119 0.881 27 H 0.118 0.882 28 H 0.139 0.861 29 H 0.138 0.862 30 H 0.140 0.860 31 H 0.239 0.761 32 H 0.105 0.895 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.124 0.876 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -7.947 -10.040 1.673 12.913 hybrid contribution 0.309 0.329 0.200 0.494 sum -7.638 -9.711 1.873 12.496 Atomic orbital electron populations 1.70138 1.07388 1.28291 1.26238 1.26190 0.94995 1.01486 0.93688 0.86244 0.80639 0.80411 0.79249 1.19269 1.19851 1.18267 1.19758 0.95082 0.89732 1.39344 0.89417 1.18669 0.88522 0.91915 0.88009 1.21430 0.98904 0.93844 1.15250 1.20672 0.93078 0.96746 0.95310 1.19016 0.93132 0.92683 1.22999 1.18580 0.91439 0.92622 0.92884 1.20797 0.99386 0.91010 1.06886 1.20174 0.90069 0.98593 1.02507 1.18332 0.91042 0.83661 1.10557 1.17700 0.83478 0.93536 1.00220 1.20479 0.93534 0.95981 1.10328 1.44537 1.02520 1.08441 1.84255 1.22116 0.96092 0.85315 1.00064 1.23118 0.82033 1.00163 0.97785 1.85952 1.24519 1.29068 1.83887 1.22761 0.98572 0.88017 0.91933 1.68794 1.07317 1.26108 1.17927 0.91231 0.88131 0.88161 0.86050 0.86171 0.86011 0.76055 0.89543 0.91769 0.92183 0.87590 0.86160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -18.00 11.47 55.55 0.64 -17.37 16 2 C 0.06 1.56 5.49 -17.33 -0.10 1.46 16 3 Si 0.91 17.76 29.57 -169.99 -5.03 12.74 16 4 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 5 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 6 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 7 C -0.41 -10.57 9.11 -37.88 -0.35 -10.91 16 8 H 0.09 2.09 7.86 -52.49 -0.41 1.68 16 9 C 0.25 6.73 6.54 -84.98 -0.56 6.17 16 10 C -0.27 -6.53 9.76 -39.16 -0.38 -6.91 16 11 C -0.03 -0.78 9.46 -39.38 -0.37 -1.15 16 12 C -0.27 -6.13 5.92 -104.45 -0.62 -6.75 16 13 C 0.05 0.92 5.88 -104.85 -0.62 0.31 16 14 C -0.16 -2.88 9.43 -39.17 -0.37 -3.25 16 15 C -0.09 -1.57 9.95 -39.47 -0.39 -1.96 16 16 C 0.01 0.19 6.53 -38.82 -0.25 -0.07 16 17 C 0.15 2.48 6.50 -83.46 -0.54 1.94 16 18 C -0.18 -3.28 9.31 -39.04 -0.36 -3.64 16 19 N -0.76 -9.86 5.93 -57.63 -0.34 -10.20 16 20 C 0.09 0.90 7.36 -3.34 -0.02 0.88 16 21 C 0.05 0.49 7.18 37.43 0.27 0.76 16 22 O -0.32 -4.80 10.32 -19.34 -0.20 -5.00 16 23 C 0.16 3.76 10.60 -17.11 -0.18 3.58 16 24 N -0.49 -13.26 7.86 -10.83 -0.09 -13.35 16 25 H 0.28 6.37 8.29 -40.82 -0.34 6.04 16 26 H 0.10 2.20 8.06 -52.48 -0.42 1.78 16 27 H 0.10 1.92 6.29 -52.49 -0.33 1.59 16 28 H 0.12 2.01 6.24 -52.49 -0.33 1.68 16 29 H 0.12 1.73 8.06 -52.49 -0.42 1.30 16 30 H 0.12 2.11 6.22 -52.48 -0.33 1.78 16 31 H 0.40 4.52 8.90 -40.82 -0.36 4.15 16 32 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.12 2.62 6.21 -52.49 -0.33 2.29 16 LS Contribution 304.17 15.07 4.58 4.58 Total: -1.00 -29.94 304.17 -9.03 -38.97 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -3.76 Total: 9.15 kcal Atomic # 6 Polarization: -14.69 SS G_CDS: -4.84 Total: -19.54 kcal Atomic # 7 Polarization: -41.12 SS G_CDS: 0.21 Total: -40.91 kcal Atomic # 8 Polarization: -4.80 SS G_CDS: -0.20 Total: -5.00 kcal Atomic # 14 Polarization: 17.76 SS G_CDS: -5.03 Total: 12.74 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.94 -9.03 -38.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241482290.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.471 kcal (2) G-P(sol) polarization free energy of solvation -29.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds