Wall clock time and date at job start Tue Mar 31 2020 05:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30710 * 1 3 3 Si 1.86806 * 119.99979 * 2 1 4 4 H 1.48497 * 109.47478 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47095 * 300.00277 * 3 2 1 6 6 H 1.48502 * 109.46928 * 60.00063 * 3 2 1 7 7 C 1.40116 * 120.00262 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99853 * 179.97438 * 7 2 1 9 9 C 1.40739 * 119.99855 * 0.02562 * 7 2 1 10 10 N 1.33715 * 119.94714 * 359.97438 * 9 7 2 11 11 C 1.31274 * 121.63626 * 179.97438 * 10 9 7 12 12 C 1.39080 * 121.35612 * 359.97438 * 11 10 9 13 13 C 1.38329 * 119.74222 * 0.02562 * 12 11 10 14 14 C 1.39765 * 118.47319 * 359.97438 * 13 12 11 15 15 C 1.47680 * 120.65688 * 180.02562 * 14 13 12 16 16 C 1.39821 * 120.12481 * 129.97760 * 15 14 13 17 17 C 1.37785 * 120.13429 * 180.02562 * 16 15 14 18 18 C 1.38983 * 120.26256 * 359.97438 * 17 16 15 19 19 C 1.39579 * 119.78244 * 359.86983 * 18 17 16 20 20 C 1.38180 * 120.31292 * 359.92680 * 19 18 17 21 21 N 1.40384 * 119.72297 * 180.38231 * 19 18 17 22 22 C 1.47291 * 117.69755 * 346.03624 * 21 19 18 23 23 C 1.53536 * 107.58003 * 42.06521 * 22 21 19 24 24 O 1.35858 * 119.51047 * 179.62603 * 18 17 16 25 25 H 0.96998 * 120.00086 * 0.02562 * 1 2 3 26 26 H 1.07997 * 119.32002 * 179.72650 * 11 10 9 27 27 H 1.07998 * 120.12740 * 179.97438 * 12 11 10 28 28 H 1.08000 * 120.76271 * 179.97438 * 13 12 11 29 29 H 1.07998 * 119.93417 * 0.09660 * 16 15 14 30 30 H 1.08001 * 119.86916 * 180.02562 * 17 16 15 31 31 H 1.07997 * 120.12212 * 180.17608 * 20 19 18 32 32 H 0.97003 * 121.15160 * 166.00600 * 21 19 18 33 33 H 1.09003 * 109.83779 * 161.58091 * 22 21 19 34 34 H 1.08996 * 109.83630 * 282.54192 * 22 21 19 35 35 H 1.09001 * 109.57706 * 61.56377 * 23 22 21 36 36 H 1.08994 * 109.57859 * 181.96188 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3071 0.0000 0.0000 3 14 2.2411 1.6178 0.0000 4 1 3.7011 1.3465 0.0006 5 1 1.8823 2.3965 -1.2124 6 1 1.8824 2.3965 1.2125 7 6 2.0077 -1.2134 -0.0005 8 1 3.0877 -1.2133 -0.0010 9 6 1.3041 -2.4323 -0.0016 10 7 -0.0331 -2.4311 -0.0016 11 6 -0.7227 -3.5481 -0.0031 12 6 -0.0922 -4.7878 -0.0053 13 6 1.2895 -4.8550 -0.0054 14 6 2.0147 -3.6603 -0.0038 15 6 3.4914 -3.6758 -0.0044 16 6 4.2010 -2.9048 -0.9302 17 6 5.5787 -2.9195 -0.9313 18 6 6.2715 -3.6995 -0.0130 19 6 5.5671 -4.4681 0.9150 20 6 4.1854 -4.4556 0.9254 21 7 6.2682 -5.2492 1.8472 22 6 7.7050 -5.4715 1.6113 23 6 8.3106 -4.1387 1.1484 24 8 7.6300 -3.7085 -0.0326 25 1 -0.4850 0.8400 -0.0004 26 1 -1.8017 -3.5035 0.0014 27 1 -0.6791 -5.6944 -0.0061 28 1 1.7961 -5.8088 -0.0067 29 1 3.6680 -2.2956 -1.6452 30 1 6.1225 -2.3220 -1.6480 31 1 3.6434 -5.0493 1.6466 32 1 5.8220 -5.6291 2.6202 33 1 8.1857 -5.7953 2.5345 34 1 7.8402 -6.2276 0.8380 35 1 8.1901 -3.3910 1.9323 36 1 9.3698 -4.2749 0.9305 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241489251.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:50 Heat of formation + Delta-G solvation = 28.598180 kcal Electronic energy + Delta-G solvation = -21280.259149 eV Core-core repulsion = 18115.307875 eV Total energy + Delta-G solvation = -3164.951274 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.18491 -38.37664 -36.65772 -35.02357 -33.69722 -31.77603 -30.52462 -29.96469 -28.64779 -26.53348 -25.73699 -23.79146 -22.61793 -21.25197 -21.15598 -19.44128 -17.69039 -17.35729 -17.04344 -16.20372 -15.50566 -15.02377 -14.71541 -14.33536 -14.12545 -13.84908 -13.80997 -13.29463 -13.13816 -12.83212 -12.46323 -12.19361 -12.03883 -11.55842 -11.26841 -11.19396 -11.03466 -10.91503 -10.69477 -10.35755 -10.20641 -9.94293 -9.47772 -9.41268 -8.35344 -7.93372 -7.60988 -7.38933 -6.79741 -6.45726 -4.53367 1.89185 2.14295 2.74468 3.01962 3.08199 3.13987 3.20702 3.46411 3.72284 3.91988 4.50678 4.70055 4.71823 4.99619 5.06395 5.26262 5.40476 5.69476 5.78766 5.83476 5.98995 6.03831 6.10102 6.17295 6.26731 6.49698 6.57275 6.68037 6.86449 6.91313 7.06449 7.20065 7.33862 7.40983 7.42843 7.63453 7.77320 7.85716 8.01238 8.04487 8.24193 8.60179 8.89886 10.05608 10.24150 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.016415 B = 0.006008 C = 0.004665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.310350 B = 4659.158559 C = 6001.034002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.708 5.708 2 C 0.068 3.932 3 Si 0.902 3.098 4 H -0.256 1.256 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.419 4.419 8 H 0.097 0.903 9 C 0.268 3.732 10 N -0.483 5.483 11 C 0.132 3.868 12 C -0.322 4.322 13 C -0.033 4.033 14 C -0.234 4.234 15 C 0.040 3.960 16 C -0.121 4.121 17 C -0.108 4.108 18 C 0.027 3.973 19 C 0.135 3.865 20 C -0.162 4.162 21 N -0.762 5.762 22 C 0.091 3.909 23 C 0.045 3.955 24 O -0.319 6.319 25 H 0.273 0.727 26 H 0.118 0.882 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.133 0.867 30 H 0.122 0.878 31 H 0.116 0.884 32 H 0.402 0.598 33 H 0.085 0.915 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.381 -5.774 2.523 13.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.329 5.329 2 C -0.159 4.159 3 Si 0.726 3.274 4 H -0.179 1.179 5 H -0.196 1.196 6 H -0.198 1.198 7 C -0.448 4.448 8 H 0.115 0.885 9 C 0.144 3.856 10 N -0.194 5.194 11 C -0.037 4.037 12 C -0.346 4.346 13 C -0.057 4.057 14 C -0.238 4.238 15 C 0.038 3.962 16 C -0.140 4.140 17 C -0.127 4.127 18 C -0.021 4.021 19 C 0.036 3.964 20 C -0.184 4.184 21 N -0.400 5.400 22 C -0.035 4.035 23 C -0.032 4.032 24 O -0.234 6.234 25 H 0.085 0.915 26 H 0.135 0.865 27 H 0.112 0.888 28 H 0.114 0.886 29 H 0.151 0.849 30 H 0.140 0.860 31 H 0.134 0.866 32 H 0.237 0.763 33 H 0.103 0.897 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 11.087 -4.723 2.309 12.270 hybrid contribution 0.504 -0.498 0.688 0.988 sum 11.591 -5.221 2.998 13.061 Atomic orbital electron populations 1.70138 1.07316 1.27912 1.27503 1.26163 0.94864 1.01299 0.93533 0.86333 0.81289 0.81114 0.78686 1.17941 1.19646 1.19768 1.19894 0.95204 0.89161 1.40584 0.88501 1.18533 0.87912 0.90999 0.88118 1.68777 1.07116 1.26539 1.16987 1.22600 0.98778 0.88894 0.93430 1.21200 0.94598 0.97807 1.20960 1.20885 0.93709 0.95721 0.95430 1.19327 0.90711 0.94391 1.19414 1.18447 0.92534 0.92996 0.92183 1.21082 0.91950 1.00766 1.00219 1.20263 0.93768 0.99129 0.99572 1.18411 0.81343 1.01049 1.01254 1.17667 0.91453 0.94182 0.93107 1.20579 0.90565 1.04995 1.02308 1.44485 1.07857 1.59442 1.28170 1.22092 0.82626 0.97268 1.01488 1.23122 0.96399 0.95766 0.87874 1.85958 1.16678 1.84119 1.36604 0.91524 0.86459 0.88804 0.88644 0.84927 0.86015 0.86607 0.76252 0.89665 0.91892 0.92125 0.87630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.51 11.46 55.56 0.64 -17.87 16 2 C 0.07 1.70 5.50 -17.32 -0.10 1.60 16 3 Si 0.90 18.46 29.56 -169.99 -5.03 13.44 16 4 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 5 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 6 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 7 C -0.42 -10.90 7.95 -37.93 -0.30 -11.20 16 8 H 0.10 2.41 5.23 -52.49 -0.27 2.14 16 9 C 0.27 7.16 6.56 -84.71 -0.56 6.60 16 10 N -0.48 -13.15 7.85 -10.90 -0.09 -13.23 16 11 C 0.13 3.16 11.17 -17.48 -0.20 2.96 16 12 C -0.32 -7.17 10.10 -39.24 -0.40 -7.57 16 13 C -0.03 -0.74 9.68 -38.98 -0.38 -1.12 16 14 C -0.23 -5.62 5.53 -104.08 -0.58 -6.20 16 15 C 0.04 0.86 5.03 -104.87 -0.53 0.34 16 16 C -0.12 -2.47 7.55 -39.16 -0.30 -2.77 16 17 C -0.11 -2.01 9.95 -39.47 -0.39 -2.40 16 18 C 0.03 0.48 6.53 -38.81 -0.25 0.23 16 19 C 0.13 2.36 6.50 -83.46 -0.54 1.82 16 20 C -0.16 -3.12 9.43 -39.02 -0.37 -3.49 16 21 N -0.76 -10.38 5.93 -57.62 -0.34 -10.72 16 22 C 0.09 0.97 7.36 -3.33 -0.02 0.94 16 23 C 0.05 0.52 7.18 37.44 0.27 0.79 16 24 O -0.32 -5.14 10.32 -19.29 -0.20 -5.34 16 25 H 0.27 6.45 8.29 -40.82 -0.34 6.11 16 26 H 0.12 2.49 8.06 -52.49 -0.42 2.07 16 27 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 28 H 0.10 1.90 8.06 -52.49 -0.42 1.48 16 29 H 0.13 2.78 7.22 -52.49 -0.38 2.40 16 30 H 0.12 2.00 8.06 -52.49 -0.42 1.58 16 31 H 0.12 2.11 8.06 -52.49 -0.42 1.69 16 32 H 0.40 4.71 8.90 -40.82 -0.36 4.34 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.11 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 304.94 15.07 4.60 4.60 Total: -1.00 -30.12 304.94 -9.01 -39.13 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -3.96 Total: 9.46 kcal Atomic # 6 Polarization: -14.84 SS G_CDS: -4.63 Total: -19.47 kcal Atomic # 7 Polarization: -42.03 SS G_CDS: 0.21 Total: -41.82 kcal Atomic # 8 Polarization: -5.14 SS G_CDS: -0.20 Total: -5.34 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -5.03 Total: 13.44 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.12 -9.01 -39.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241489251.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.726 kcal (2) G-P(sol) polarization free energy of solvation -30.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds