Wall clock time and date at job start Tue Mar 31 2020 05:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29997 * 126.86984 * 2 1 4 4 O 1.20845 * 111.99132 * 179.97438 * 3 2 1 5 5 C 1.33993 * 111.86212 * 0.02562 * 4 3 2 6 6 C 1.50700 * 126.88284 * 180.02562 * 5 4 3 7 7 C 1.36727 * 106.23082 * 359.97438 * 5 4 3 8 8 C 1.48252 * 128.17803 * 180.25875 * 7 5 4 9 9 C 1.39154 * 120.27633 * 269.40836 * 8 7 5 10 10 C 1.38345 * 120.10122 * 179.67825 * 9 8 7 11 11 C 1.38030 * 120.76768 * 0.61601 * 10 9 8 12 12 C 1.39139 * 120.23230 * 359.68354 * 11 10 9 13 13 N 1.38175 * 132.73842 * 180.02562 * 12 11 10 14 14 H 0.96996 * 124.70551 * 359.97438 * 13 12 11 15 15 C 1.35616 * 110.59427 * 179.97438 * 13 12 11 16 16 C 1.38998 * 109.24293 * 359.97438 * 15 13 12 17 17 C 1.40952 * 126.92589 * 179.97438 * 16 15 13 18 18 H 1.08004 * 119.99716 * 179.97438 * 17 16 15 19 19 C 1.39665 * 120.00176 * 0.02562 * 17 16 15 20 20 N 1.31086 * 120.00353 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99732 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47194 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.46844 * 120.00049 * 21 19 17 24 24 H 1.48498 * 109.47030 * 239.99718 * 21 19 17 25 25 C 1.40169 * 120.27800 * 89.67695 * 8 7 5 26 26 H 1.08996 * 109.46992 * 270.04485 * 1 2 3 27 27 H 1.09009 * 109.46589 * 30.04193 * 1 2 3 28 28 H 1.08997 * 109.47259 * 150.04142 * 1 2 3 29 29 H 1.09001 * 109.47168 * 269.97675 * 6 5 4 30 30 H 1.08993 * 109.47017 * 29.97940 * 6 5 4 31 31 H 1.09008 * 109.46572 * 149.97641 * 6 5 4 32 32 H 1.08003 * 119.94944 * 359.97047 * 9 8 7 33 33 H 1.08000 * 119.61208 * 180.29634 * 10 9 8 34 34 H 1.08000 * 119.88741 * 179.70295 * 11 10 9 35 35 H 1.07998 * 125.37971 * 180.02562 * 15 13 12 36 36 H 0.96998 * 120.00052 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2870 1.0400 0.0000 4 8 3.4549 0.7297 0.0005 5 6 3.6179 -0.6003 0.0004 6 6 4.9243 -1.3515 0.0014 7 6 2.3613 -1.1392 0.0003 8 6 1.9785 -2.5715 0.0054 9 6 1.7875 -3.2509 -1.1939 10 6 1.4368 -4.5892 -1.1850 11 6 1.2594 -5.2647 0.0055 12 6 1.4383 -4.6062 1.2181 13 7 1.3323 -5.0172 2.5330 14 1 1.0934 -5.9144 2.8136 15 6 1.6086 -3.9922 3.3770 16 6 1.9105 -2.8564 2.6348 17 6 2.2517 -1.5837 3.1354 18 1 2.4668 -0.7749 2.4528 19 6 2.3126 -1.3689 4.5141 20 7 2.0520 -2.3507 5.3427 21 14 2.7654 0.3177 5.1774 22 1 3.0115 1.2455 4.0444 23 1 1.6514 0.8374 6.0105 24 1 3.9940 0.2107 6.0047 25 6 1.8004 -3.2511 1.2183 26 1 -0.3633 0.0008 1.0276 27 1 -0.3633 0.8897 -0.5145 28 1 -0.3633 -0.8903 -0.5132 29 1 5.2400 -1.5328 -1.0260 30 1 5.6824 -0.7611 0.5157 31 1 4.7951 -2.3041 0.5153 32 1 1.9179 -2.7339 -2.1332 33 1 1.2953 -5.1100 -2.1205 34 1 0.9809 -6.3081 -0.0041 35 1 1.5967 -4.0497 4.4554 36 1 2.0939 -2.2014 6.3002 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242108225.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:29 Heat of formation + Delta-G solvation = 100.322222 kcal Electronic energy + Delta-G solvation = -22103.121282 eV Core-core repulsion = 18941.280195 eV Total energy + Delta-G solvation = -3161.841086 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.19767 -39.73344 -36.09160 -34.36229 -33.43277 -32.85690 -30.52831 -28.69740 -28.08502 -27.81618 -26.87715 -24.85851 -22.94052 -20.78374 -20.62885 -19.61820 -19.30500 -17.30686 -16.97371 -16.09508 -15.76565 -15.32575 -14.48707 -14.31569 -13.76500 -13.38452 -13.20207 -12.99230 -12.91981 -12.58664 -12.54563 -12.53376 -12.16880 -11.78315 -11.52326 -11.23977 -11.13123 -10.91684 -10.78517 -10.51999 -10.31957 -9.85467 -9.73018 -9.43049 -9.13439 -8.38060 -8.36040 -7.12819 -6.65138 -6.50854 -4.00628 1.99331 2.10330 2.53701 2.86691 3.06668 3.17444 3.26439 3.71974 4.09551 4.16876 4.50567 4.62511 4.81945 5.08386 5.46809 5.53767 5.65806 5.72714 5.79559 5.86345 5.90417 5.97528 6.04873 6.17512 6.21971 6.30319 6.41607 6.50384 6.57841 6.67560 6.83745 7.08578 7.16311 7.31211 7.42496 7.58026 7.82358 7.99085 8.27993 8.65115 8.92066 9.00190 9.13366 9.17938 10.46881 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.012252 B = 0.009999 C = 0.006582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.877141 B = 2799.527272 C = 4252.730199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.040 3.960 3 N -0.379 5.379 4 O 0.088 5.912 5 C -0.029 4.029 6 C -0.065 4.065 7 C -0.124 4.124 8 C 0.036 3.964 9 C -0.169 4.169 10 C -0.116 4.116 11 C -0.147 4.147 12 C 0.084 3.916 13 N -0.591 5.591 14 H 0.394 0.606 15 C -0.092 4.092 16 C 0.018 3.982 17 C -0.405 4.405 18 H 0.071 0.929 19 C 0.056 3.944 20 N -0.833 5.833 21 Si 0.904 3.096 22 H -0.264 1.264 23 H -0.277 1.277 24 H -0.277 1.277 25 C -0.106 4.106 26 H 0.082 0.918 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.105 0.895 33 H 0.109 0.891 34 H 0.101 0.899 35 H 0.192 0.808 36 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.831 -2.063 -7.840 8.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.119 4.119 3 N -0.087 5.087 4 O 0.025 5.975 5 C -0.092 4.092 6 C -0.122 4.122 7 C -0.128 4.128 8 C 0.035 3.965 9 C -0.190 4.190 10 C -0.135 4.135 11 C -0.169 4.169 12 C -0.027 4.027 13 N -0.192 5.192 14 H 0.228 0.772 15 C -0.216 4.216 16 C 0.013 3.987 17 C -0.438 4.438 18 H 0.089 0.911 19 C -0.153 4.153 20 N -0.465 5.465 21 Si 0.730 3.270 22 H -0.187 1.187 23 H -0.203 1.203 24 H -0.202 1.202 25 C -0.114 4.114 26 H 0.101 0.899 27 H 0.086 0.914 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.112 0.888 32 H 0.123 0.877 33 H 0.127 0.873 34 H 0.119 0.881 35 H 0.208 0.792 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.616 -0.793 -7.434 7.501 hybrid contribution -0.050 -0.492 0.676 0.838 sum 0.566 -1.284 -6.757 6.901 Atomic orbital electron populations 1.20091 0.86475 1.02635 1.03598 1.23451 0.98516 0.88214 1.01741 1.73557 0.89348 1.24135 1.21662 1.84650 1.21431 1.22807 1.68631 1.24375 0.98016 0.83259 1.03543 1.20225 0.89722 0.99323 1.02938 1.19517 0.91117 0.94460 1.07709 1.17037 0.99599 0.88045 0.91826 1.20511 1.08100 0.94637 0.95756 1.20287 1.02941 0.94253 0.96066 1.19860 1.08197 0.98571 0.90279 1.18150 1.04749 0.94459 0.85383 1.41584 1.61879 1.11970 1.03742 0.77239 1.23420 1.15801 0.86246 0.96161 1.18036 1.00553 0.93617 0.86518 1.18790 1.38824 0.95131 0.91058 0.91117 1.25573 0.94821 0.98005 0.96939 1.69449 1.41597 1.31817 1.03609 0.86274 0.78564 0.82793 0.79368 1.18748 1.20286 1.20218 1.19342 1.05847 0.92508 0.93659 0.89905 0.91416 0.90303 0.90282 0.90392 0.88790 0.87687 0.87326 0.88053 0.79153 0.91745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.21 10.40 36.01 0.37 -0.84 16 2 C 0.04 0.80 7.05 -81.77 -0.58 0.23 16 3 N -0.38 -7.85 12.03 33.69 0.41 -7.45 16 4 O 0.09 1.74 11.17 17.32 0.19 1.93 16 5 C -0.03 -0.55 7.15 -34.85 -0.25 -0.80 16 6 C -0.06 -0.97 10.32 36.01 0.37 -0.60 16 7 C -0.12 -2.54 4.03 -104.73 -0.42 -2.96 16 8 C 0.04 0.75 5.55 -104.72 -0.58 0.17 16 9 C -0.17 -3.07 9.78 -39.20 -0.38 -3.45 16 10 C -0.12 -1.95 10.00 -39.62 -0.40 -2.35 16 11 C -0.15 -2.65 10.06 -39.32 -0.40 -3.04 16 12 C 0.08 1.78 7.23 -83.91 -0.61 1.17 16 13 N -0.59 -12.30 5.99 -9.80 -0.06 -12.36 16 14 H 0.39 6.69 8.96 -40.82 -0.37 6.32 16 15 C -0.09 -2.26 10.89 -15.60 -0.17 -2.43 16 16 C 0.02 0.46 6.10 -104.83 -0.64 -0.18 16 17 C -0.41 -10.82 9.07 -38.02 -0.34 -11.17 16 18 H 0.07 1.91 5.64 -52.48 -0.30 1.62 16 19 C 0.06 1.45 5.49 -17.34 -0.10 1.36 16 20 N -0.83 -21.49 10.33 55.54 0.57 -20.91 16 21 Si 0.90 20.30 29.56 -169.99 -5.02 15.28 16 22 H -0.26 -6.11 7.11 56.52 0.40 -5.71 16 23 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 24 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 25 C -0.11 -2.48 6.19 -104.65 -0.65 -3.13 16 26 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 27 H 0.07 1.00 8.14 -51.92 -0.42 0.58 16 28 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 29 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.09 1.55 8.08 -51.92 -0.42 1.13 16 32 H 0.11 1.70 8.06 -52.48 -0.42 1.28 16 33 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 34 H 0.10 1.54 8.06 -52.49 -0.42 1.12 16 35 H 0.19 4.85 5.68 -52.49 -0.30 4.55 16 36 H 0.27 6.51 8.30 -40.82 -0.34 6.17 16 LS Contribution 311.25 15.07 4.69 4.69 Total: -1.00 -29.17 311.25 -7.88 -37.05 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -3.90 Total: 9.78 kcal Atomic # 6 Polarization: -23.26 SS G_CDS: -4.76 Total: -28.02 kcal Atomic # 7 Polarization: -41.64 SS G_CDS: 0.92 Total: -40.72 kcal Atomic # 8 Polarization: 1.74 SS G_CDS: 0.19 Total: 1.93 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.17 -7.88 -37.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242108225.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.371 kcal (2) G-P(sol) polarization free energy of solvation -29.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds