Wall clock time and date at job start Tue Mar 31 2020 05:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30861 * 1 3 3 Si 1.86799 * 120.00266 * 2 1 4 4 H 1.48499 * 109.47251 * 270.00232 * 3 2 1 5 5 H 1.48503 * 109.46860 * 30.00284 * 3 2 1 6 6 H 1.48500 * 109.47477 * 149.99695 * 3 2 1 7 7 C 1.39893 * 120.00084 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00532 * 162.91701 * 7 2 1 9 9 C 1.41351 * 119.99941 * 342.91417 * 7 2 1 10 10 C 1.40866 * 120.14554 * 154.63084 * 9 7 2 11 11 C 1.37573 * 120.06663 * 180.02562 * 10 9 7 12 12 C 1.38725 * 120.37113 * 359.72235 * 11 10 9 13 13 F 1.35097 * 119.85846 * 180.27989 * 12 11 10 14 14 C 1.40183 * 120.28747 * 0.55751 * 12 11 10 15 15 C 1.47800 * 120.03659 * 179.71661 * 14 12 11 16 16 C 1.32578 * 120.00116 * 179.72807 * 15 14 12 17 17 C 1.50699 * 119.99753 * 179.97438 * 16 15 14 18 18 C 1.50706 * 109.47199 * 124.99919 * 17 16 15 19 19 C 1.38231 * 119.99703 * 89.99394 * 18 17 16 20 20 C 1.38233 * 120.00121 * 180.27948 * 19 18 17 21 21 C 1.38232 * 119.99784 * 359.49399 * 20 19 18 22 22 C 1.38237 * 119.99709 * 0.51156 * 21 20 19 23 23 C 1.38225 * 120.00152 * 270.02861 * 18 17 16 24 24 C 1.38878 * 119.92807 * 359.44458 * 14 12 11 25 25 H 0.97001 * 120.00091 * 359.97438 * 1 2 3 26 26 H 1.08001 * 119.96519 * 0.02562 * 10 9 7 27 27 H 1.08002 * 119.81616 * 180.02562 * 11 10 9 28 28 H 1.08007 * 119.99436 * 359.72964 * 15 14 12 29 29 H 1.07997 * 119.99950 * 0.02562 * 16 15 14 30 30 H 1.09005 * 109.47515 * 5.00283 * 17 16 15 31 31 H 1.09001 * 109.47601 * 245.00099 * 17 16 15 32 32 H 1.08003 * 120.00034 * 0.02562 * 19 18 17 33 33 H 1.07997 * 120.00536 * 179.73029 * 20 19 18 34 34 H 1.07999 * 120.00233 * 180.23529 * 21 20 19 35 35 H 1.08001 * 119.99723 * 179.72339 * 22 21 20 36 36 H 1.08001 * 120.00153 * 359.97438 * 23 18 17 37 37 H 1.08003 * 120.18209 * 180.29360 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.4902 2.0464 -1.4001 5 1 1.4401 2.6526 0.7001 6 1 3.5402 1.4402 0.7001 7 6 2.0081 -1.2115 -0.0005 8 1 3.0523 -1.2321 -0.2753 9 6 1.3481 -2.4088 0.3586 10 6 1.8172 -3.6468 -0.1225 11 6 1.1733 -4.8111 0.2276 12 6 0.0637 -4.7761 1.0594 13 9 -0.5573 -5.9261 1.4012 14 6 -0.4196 -3.5519 1.5422 15 6 -1.6060 -3.5205 2.4231 16 6 -2.0593 -2.3629 2.8836 17 6 -3.2693 -2.3309 3.7813 18 6 -2.9275 -1.6098 5.0597 19 6 -3.1098 -0.2427 5.1519 20 6 -2.7909 0.4197 6.3226 21 6 -2.2996 -0.2866 7.4045 22 6 -2.1173 -1.6538 7.3122 23 6 -2.4312 -2.3153 6.1398 24 6 0.2210 -2.3692 1.1965 25 1 -0.4850 0.8400 0.0004 26 1 2.6832 -3.6821 -0.7669 27 1 1.5367 -5.7581 -0.1433 28 1 -2.1037 -4.4408 2.6915 29 1 -1.5618 -1.4428 2.6148 30 1 -3.5785 -3.3507 4.0110 31 1 -4.0827 -1.8097 3.2764 32 1 -3.4975 0.3086 4.3080 33 1 -2.9291 1.4885 6.3932 34 1 -2.0540 0.2303 8.3204 35 1 -1.7292 -2.2050 8.1560 36 1 -2.2887 -3.3835 6.0677 37 1 -0.1450 -1.4242 1.5700 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242143349.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:01 Heat of formation + Delta-G solvation = -5.531029 kcal Electronic energy + Delta-G solvation = -20384.177479 eV Core-core repulsion = 17197.826289 eV Total energy + Delta-G solvation = -3186.351190 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.112 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -47.51761 -39.17355 -37.59093 -34.91449 -33.62018 -31.85569 -30.78734 -29.45860 -28.81729 -25.64445 -25.13042 -22.47915 -22.19535 -21.24153 -20.36238 -18.54698 -17.42341 -16.66328 -16.21409 -15.40844 -15.11559 -15.04546 -14.77527 -14.27766 -14.10612 -13.41137 -13.31625 -13.18126 -12.89712 -12.79105 -12.31081 -12.07002 -11.92874 -11.73176 -11.41805 -11.15453 -11.06471 -10.98087 -10.83929 -10.65212 -10.46622 -9.87168 -9.57183 -9.42388 -9.02148 -8.82322 -8.56469 -7.44436 -7.10388 -6.83976 -4.45710 1.44878 1.50038 2.03510 2.68147 3.01327 3.01882 3.08321 3.48074 3.85241 3.90277 4.51333 4.93199 4.99094 5.08888 5.21909 5.40088 5.49479 5.51967 5.61201 5.68753 5.76070 5.86017 5.98032 6.04531 6.14879 6.17235 6.25330 6.55217 6.58765 6.64848 6.76209 6.84332 6.90209 7.05510 7.10802 7.22924 7.35377 7.41520 7.65031 7.80856 7.90170 8.10706 8.44833 8.73443 8.77668 10.06815 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.011249 B = 0.005712 C = 0.004094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.573209 B = 4901.206900 C = 6837.617594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.075 3.925 3 Si 0.908 3.092 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.457 4.457 8 H 0.081 0.919 9 C 0.099 3.901 10 C -0.202 4.202 11 C -0.120 4.120 12 C -0.034 4.034 13 F -0.171 7.171 14 C -0.076 4.076 15 C -0.092 4.092 16 C -0.166 4.166 17 C -0.048 4.048 18 C -0.067 4.067 19 C -0.117 4.117 20 C -0.120 4.120 21 C -0.131 4.131 22 C -0.120 4.120 23 C -0.115 4.115 24 C -0.125 4.125 25 H 0.283 0.717 26 H 0.102 0.898 27 H 0.102 0.898 28 H 0.105 0.895 29 H 0.121 0.879 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.122 0.878 33 H 0.119 0.881 34 H 0.117 0.883 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.376 1.289 9.420 10.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.143 4.143 3 Si 0.732 3.268 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.486 4.486 8 H 0.099 0.901 9 C 0.097 3.903 10 C -0.222 4.222 11 C -0.139 4.139 12 C -0.054 4.054 13 F -0.150 7.150 14 C -0.077 4.077 15 C -0.110 4.110 16 C -0.183 4.183 17 C -0.085 4.085 18 C -0.067 4.067 19 C -0.135 4.135 20 C -0.138 4.138 21 C -0.149 4.149 22 C -0.138 4.138 23 C -0.133 4.133 24 C -0.145 4.145 25 H 0.094 0.906 26 H 0.120 0.880 27 H 0.120 0.880 28 H 0.123 0.877 29 H 0.139 0.861 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.140 0.860 33 H 0.137 0.863 34 H 0.135 0.865 35 H 0.136 0.864 36 H 0.138 0.862 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -5.604 1.416 9.415 11.048 hybrid contribution 0.325 0.551 -0.088 0.646 sum -5.279 1.967 9.327 10.897 Atomic orbital electron populations 1.69808 1.07538 1.29503 1.34768 1.25917 0.94790 1.01420 0.92150 0.86308 0.80703 0.80460 0.79338 1.19375 1.19968 1.18366 1.19556 0.97965 0.90934 1.40155 0.90104 1.17601 0.91347 0.92306 0.89061 1.20900 1.03409 0.92107 1.05762 1.20460 0.95872 0.98189 0.99366 1.17359 0.98768 0.80321 1.08937 1.91261 1.82853 1.48828 1.92070 1.18728 0.96502 0.92578 0.99900 1.21583 0.95452 0.97074 0.96934 1.23070 0.97524 0.98935 0.98805 1.19666 0.96877 1.00117 0.91792 1.19901 0.97818 0.93928 0.95058 1.21094 1.00540 0.93992 0.97830 1.21111 0.99544 0.99640 0.93521 1.21084 1.00699 0.94461 0.98686 1.21107 1.00213 0.94677 0.97835 1.21069 0.99182 1.00063 0.92988 1.21487 0.97974 0.95779 0.99212 0.90633 0.87959 0.88036 0.87705 0.86144 0.90954 0.90356 0.86027 0.86344 0.86501 0.86352 0.86155 0.84903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.52 10.96 55.54 0.61 -18.91 16 2 C 0.08 1.81 5.14 -17.35 -0.09 1.73 16 3 Si 0.91 18.01 29.59 -169.99 -5.03 12.98 16 4 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 5 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 6 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 7 C -0.46 -11.64 9.04 -37.78 -0.34 -11.98 16 8 H 0.08 1.97 7.90 -52.49 -0.41 1.55 16 9 C 0.10 2.57 5.56 -106.87 -0.59 1.97 16 10 C -0.20 -4.84 9.78 -38.83 -0.38 -5.22 16 11 C -0.12 -2.75 9.99 -39.64 -0.40 -3.14 16 12 C -0.03 -0.81 7.30 -38.67 -0.28 -1.09 16 13 F -0.17 -3.85 16.59 2.25 0.04 -3.81 16 14 C -0.08 -1.80 5.87 -105.02 -0.62 -2.42 16 15 C -0.09 -1.87 9.30 -37.58 -0.35 -2.22 16 16 C -0.17 -3.03 8.92 -36.21 -0.32 -3.35 16 17 C -0.05 -0.69 5.79 -29.03 -0.17 -0.86 16 18 C -0.07 -0.96 5.12 -104.63 -0.54 -1.49 16 19 C -0.12 -1.57 9.70 -39.59 -0.38 -1.96 16 20 C -0.12 -1.48 10.05 -39.59 -0.40 -1.87 16 21 C -0.13 -1.55 10.05 -39.58 -0.40 -1.95 16 22 C -0.12 -1.48 10.05 -39.58 -0.40 -1.87 16 23 C -0.12 -1.56 9.70 -39.59 -0.38 -1.95 16 24 C -0.13 -3.17 8.03 -38.49 -0.31 -3.47 16 25 H 0.28 6.34 8.30 -40.82 -0.34 6.01 16 26 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16 27 H 0.10 2.04 8.06 -52.49 -0.42 1.62 16 28 H 0.10 1.96 7.54 -52.48 -0.40 1.56 16 29 H 0.12 2.44 6.03 -52.49 -0.32 2.13 16 30 H 0.07 0.96 7.76 -51.93 -0.40 0.56 16 31 H 0.08 1.03 8.09 -51.93 -0.42 0.61 16 32 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 33 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 34 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 35 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 36 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 37 H 0.13 3.38 4.28 -52.48 -0.22 3.16 16 LS Contribution 324.15 15.07 4.88 4.88 Total: -1.00 -27.03 324.15 -10.11 -37.14 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -4.27 Total: 8.86 kcal Atomic # 6 Polarization: -34.79 SS G_CDS: -6.35 Total: -41.14 kcal Atomic # 7 Polarization: -19.52 SS G_CDS: 0.61 Total: -18.91 kcal Atomic # 9 Polarization: -3.85 SS G_CDS: 0.04 Total: -3.81 kcal Atomic # 14 Polarization: 18.01 SS G_CDS: -5.03 Total: 12.98 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -27.03 -10.11 -37.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242143349.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.608 kcal (2) G-P(sol) polarization free energy of solvation -27.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds