Wall clock time and date at job start Tue Mar 31 2020 05:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21237 * 119.99786 * 2 1 4 4 C 1.47357 * 119.99824 * 180.27323 * 2 1 3 5 5 C 1.39762 * 119.58986 * 179.72457 * 4 2 1 6 6 C 1.38161 * 119.19321 * 179.97438 * 5 4 2 7 7 C 1.40065 * 118.37896 * 0.02562 * 6 5 4 8 8 C 1.47823 * 120.44416 * 179.97438 * 7 6 5 9 9 C 1.39964 * 119.44813 * 179.72740 * 8 7 6 10 10 C 1.36600 * 119.46068 * 179.69659 * 9 8 7 11 11 C 1.41331 * 118.40961 * 0.55652 * 10 9 8 12 12 C 1.40950 * 120.54935 * 179.74511 * 11 10 9 13 13 H 1.08007 * 119.99783 * 204.92012 * 12 11 10 14 14 C 1.40159 * 120.00298 * 24.92390 * 12 11 10 15 15 N 1.30705 * 119.99642 * 14.67189 * 14 12 11 16 16 Si 1.86795 * 120.00327 * 194.66882 * 14 12 11 17 17 H 1.48499 * 109.47192 * 59.99770 * 16 14 12 18 18 H 1.48500 * 109.47559 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.46704 * 300.00061 * 16 14 12 20 20 C 1.41043 * 118.89722 * 359.72983 * 11 10 9 21 21 C 1.50697 * 119.80048 * 180.02562 * 20 11 10 22 22 N 1.31200 * 120.39948 * 359.97121 * 20 11 10 23 23 C 1.40044 * 119.11040 * 359.97438 * 7 6 5 24 24 N 1.31208 * 120.72081 * 359.74372 * 23 7 6 25 25 H 1.09001 * 109.47145 * 89.99782 * 1 2 3 26 26 H 1.09001 * 109.47488 * 210.00212 * 1 2 3 27 27 H 1.09003 * 109.46980 * 330.00387 * 1 2 3 28 28 H 1.08000 * 120.40250 * 0.02562 * 5 4 2 29 29 H 1.07999 * 120.81140 * 180.02562 * 6 5 4 30 30 H 1.07997 * 120.26971 * 359.97438 * 9 8 7 31 31 H 1.07993 * 120.79204 * 180.26048 * 10 9 8 32 32 H 0.97006 * 119.99894 * 180.02562 * 15 14 12 33 33 H 1.09007 * 109.46723 * 269.97300 * 21 20 11 34 34 H 1.08999 * 109.47465 * 29.97097 * 21 20 11 35 35 H 1.09002 * 109.47248 * 149.97479 * 21 20 11 36 36 H 1.08002 * 119.63825 * 179.97438 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0500 0.0000 4 6 2.2438 -1.2762 -0.0061 5 6 3.6413 -1.2662 -0.0119 6 6 4.3238 -2.4674 -0.0170 7 6 3.5812 -3.6550 -0.0168 8 6 4.2646 -4.9658 -0.0227 9 6 3.5020 -6.1394 -0.0165 10 6 4.1332 -7.3508 -0.0283 11 6 5.5463 -7.3727 -0.0344 12 6 6.2439 -8.5975 -0.0412 13 1 7.2499 -8.6481 0.3485 14 6 5.6320 -9.7496 -0.5537 15 7 4.5489 -9.6472 -1.2780 16 14 6.3646 -11.4315 -0.2016 17 1 6.3923 -11.6622 1.2650 18 1 5.5363 -12.4783 -0.8523 19 1 7.7480 -11.4909 -0.7383 20 6 6.2470 -6.1486 -0.0339 21 6 7.7539 -6.1481 -0.0410 22 7 5.5946 -5.0102 -0.0285 23 6 2.1826 -3.5840 -0.0108 24 7 1.5704 -2.4235 -0.0004 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3633 0.8901 0.5138 28 1 4.1812 -0.3308 -0.0115 29 1 5.4036 -2.4902 -0.0211 30 1 2.4233 -6.0877 -0.0071 31 1 3.5660 -8.2698 -0.0281 32 1 4.1252 -10.4446 -1.6324 33 1 8.1220 -6.1507 0.9851 34 1 8.1151 -7.0367 -0.5587 35 1 8.1146 -5.2567 -0.5542 36 1 1.6015 -4.4944 -0.0110 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242399521.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:56 Heat of formation + Delta-G solvation = -2.926016 kcal Electronic energy + Delta-G solvation = -20356.097936 eV Core-core repulsion = 17189.779670 eV Total energy + Delta-G solvation = -3166.318266 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.52264 -40.43255 -39.52978 -36.25010 -34.46759 -33.51768 -32.57111 -32.08636 -30.55389 -28.81816 -27.31113 -25.04428 -24.62474 -22.93228 -21.94448 -21.21647 -19.35154 -18.35401 -17.72677 -17.23628 -16.96724 -16.40695 -16.22854 -15.77292 -15.41926 -15.18450 -15.11531 -14.63915 -14.44297 -14.25122 -13.84279 -13.52997 -13.41611 -13.15234 -13.05580 -12.97179 -12.95050 -12.69270 -12.63862 -12.22608 -11.72596 -11.33950 -11.23178 -10.91113 -10.46116 -10.41946 -10.18403 -9.99483 -9.13804 -8.78516 -6.46026 -0.73182 0.26874 0.65764 1.04167 1.31786 1.40608 1.52130 1.62282 2.13747 2.57869 2.82830 2.94199 3.44319 3.59356 3.65730 3.93406 3.99670 4.14906 4.19950 4.34599 4.53535 4.61623 4.67674 4.70209 4.76261 4.87673 4.95820 4.98140 5.04363 5.12813 5.20442 5.22778 5.34781 5.47080 5.56588 5.77805 5.89290 5.96415 6.30449 6.41211 6.61225 6.70095 6.84545 7.64450 8.09238 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.038428 B = 0.003439 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.459087 B = 8140.225894 C = 8789.692605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.419 3.581 3 O -0.490 6.490 4 C -0.013 4.013 5 C -0.106 4.106 6 C -0.095 4.095 7 C -0.010 4.010 8 C -0.029 4.029 9 C -0.120 4.120 10 C -0.167 4.167 11 C 0.047 3.953 12 C -0.441 4.441 13 H 0.100 0.900 14 C 0.034 3.966 15 N -0.797 5.797 16 Si 0.989 3.011 17 H -0.257 1.257 18 H -0.268 1.268 19 H -0.254 1.254 20 C -0.010 4.010 21 C -0.067 4.067 22 N -0.455 5.455 23 C 0.078 3.922 24 N -0.431 5.431 25 H 0.113 0.887 26 H 0.099 0.901 27 H 0.098 0.902 28 H 0.150 0.850 29 H 0.140 0.860 30 H 0.132 0.868 31 H 0.123 0.877 32 H 0.298 0.702 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.084 4.428 1.535 6.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.299 3.701 3 O -0.366 6.366 4 C -0.147 4.147 5 C -0.126 4.126 6 C -0.121 4.121 7 C -0.013 4.013 8 C -0.162 4.162 9 C -0.140 4.140 10 C -0.192 4.192 11 C 0.042 3.958 12 C -0.469 4.469 13 H 0.118 0.882 14 C -0.186 4.186 15 N -0.420 5.420 16 Si 0.809 3.191 17 H -0.182 1.182 18 H -0.192 1.192 19 H -0.178 1.178 20 C -0.157 4.157 21 C -0.124 4.124 22 N -0.163 5.163 23 C -0.084 4.084 24 N -0.142 5.142 25 H 0.131 0.869 26 H 0.118 0.882 27 H 0.116 0.884 28 H 0.168 0.832 29 H 0.158 0.842 30 H 0.150 0.850 31 H 0.140 0.860 32 H 0.110 0.890 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -4.443 5.729 1.390 7.382 hybrid contribution 0.755 -1.794 -0.066 1.948 sum -3.687 3.935 1.324 5.553 Atomic orbital electron populations 1.22087 0.89869 1.05798 1.05988 1.22710 0.93473 0.85104 0.68812 1.90508 1.73338 1.34107 1.38627 1.21874 0.91988 0.94573 1.06306 1.22276 0.94711 0.99273 0.96304 1.21705 1.01396 0.90915 0.98116 1.19988 0.94540 0.92536 0.94276 1.18926 0.89241 0.91330 1.16712 1.21568 1.00129 0.92693 0.99602 1.21429 0.94898 0.97211 1.05614 1.18831 0.93262 0.94167 0.89563 1.20089 1.01997 0.92412 1.32367 0.88225 1.27011 0.94438 1.05520 0.91610 1.69755 1.16811 1.34334 1.21150 0.85110 0.79461 0.74580 0.79965 1.18156 1.19207 1.17815 1.21558 0.96920 0.87717 1.09480 1.20277 0.88674 1.01914 1.01568 1.66750 1.09174 1.30673 1.09746 1.23071 0.90733 0.96128 0.98517 1.67522 1.40090 0.97557 1.09039 0.86933 0.88235 0.88374 0.83199 0.84175 0.85038 0.85960 0.89048 0.91784 0.91110 0.92149 0.80503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.34 10.01 71.24 0.71 -2.62 16 2 C 0.42 11.30 7.23 28.09 0.20 11.50 16 3 O -0.49 -15.39 17.05 -2.90 -0.05 -15.44 16 4 C -0.01 -0.38 6.73 41.73 0.28 -0.10 16 5 C -0.11 -3.35 9.61 22.62 0.22 -3.13 16 6 C -0.10 -3.37 9.68 22.69 0.22 -3.15 16 7 C -0.01 -0.40 5.90 -19.86 -0.12 -0.51 16 8 C -0.03 -1.27 6.74 41.91 0.28 -0.99 16 9 C -0.12 -5.18 9.39 22.30 0.21 -4.98 16 10 C -0.17 -7.99 8.73 22.65 0.20 -7.80 16 11 C 0.05 2.29 5.59 -21.17 -0.12 2.17 16 12 C -0.44 -20.38 8.16 23.40 0.19 -20.19 16 13 H 0.10 4.27 6.84 -2.91 -0.02 4.25 16 14 C 0.03 1.45 5.22 85.33 0.45 1.90 16 15 N -0.80 -36.21 10.82 21.86 0.24 -35.97 16 16 Si 0.99 32.35 29.59 68.60 2.03 34.38 16 17 H -0.26 -8.29 7.11 99.48 0.71 -7.59 16 18 H -0.27 -8.39 7.11 99.48 0.71 -7.69 16 19 H -0.25 -8.03 7.11 99.48 0.71 -7.32 16 20 C -0.01 -0.44 6.86 43.34 0.30 -0.15 16 21 C -0.07 -2.56 9.58 71.23 0.68 -1.88 16 22 N -0.45 -21.11 9.36 -170.98 -1.60 -22.71 16 23 C 0.08 2.58 10.59 85.22 0.90 3.48 16 24 N -0.43 -13.33 9.41 -184.14 -1.73 -15.06 16 25 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.10 1.79 7.60 -2.39 -0.02 1.78 16 27 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.15 4.27 7.63 -2.91 -0.02 4.25 16 29 H 0.14 5.00 7.60 -2.91 -0.02 4.97 16 30 H 0.13 4.74 6.16 -2.91 -0.02 4.72 16 31 H 0.12 5.94 6.17 -2.91 -0.02 5.92 16 32 H 0.30 12.12 8.29 -92.70 -0.77 11.35 16 33 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 34 H 0.07 2.63 6.76 -2.39 -0.02 2.61 16 35 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.18 5.09 6.16 -2.91 -0.02 5.08 16 Total: -1.00 -56.01 313.35 4.61 -51.39 By element: Atomic # 1 Polarization: 28.75 SS G_CDS: 1.12 Total: 29.87 kcal Atomic # 6 Polarization: -31.06 SS G_CDS: 4.61 Total: -26.45 kcal Atomic # 7 Polarization: -70.65 SS G_CDS: -3.10 Total: -73.75 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: -0.05 Total: -15.44 kcal Atomic # 14 Polarization: 32.35 SS G_CDS: 2.03 Total: 34.38 kcal Total: -56.01 4.61 -51.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242399521.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.468 kcal (2) G-P(sol) polarization free energy of solvation -56.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds