Wall clock time and date at job start Tue Mar 31 2020 05:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31552 * 1 3 3 Si 1.86801 * 119.99820 * 2 1 4 4 H 1.48504 * 109.47283 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47377 * 120.00005 * 3 2 1 6 6 H 1.48501 * 109.47182 * 240.00169 * 3 2 1 7 7 C 1.38655 * 120.00313 * 179.72826 * 2 1 3 8 8 H 1.08000 * 120.00153 * 180.02562 * 7 2 1 9 9 O 1.34812 * 119.99857 * 359.97438 * 7 2 1 10 10 C 1.35709 * 116.99834 * 174.92905 * 9 7 2 11 11 C 1.39423 * 120.38783 * 5.18644 * 10 9 7 12 12 C 1.38223 * 118.45367 * 179.73444 * 11 10 9 13 13 C 1.39434 * 119.14603 * 0.56309 * 12 11 10 14 14 C 1.48283 * 119.65232 * 179.72504 * 13 12 11 15 15 C 1.39416 * 120.12962 * 359.69446 * 14 13 12 16 16 C 1.37980 * 119.87051 * 179.73789 * 15 14 13 17 17 C 1.38318 * 120.19165 * 0.57066 * 16 15 14 18 18 C 1.38560 * 120.17536 * 359.68636 * 17 16 15 19 19 C 1.37958 * 120.09543 * 0.02562 * 18 17 16 20 20 C 1.51213 * 108.24192 * 179.97438 * 18 17 16 21 21 N 1.48038 * 105.67269 * 342.47723 * 20 18 17 22 22 C 1.48038 * 103.90346 * 27.65918 * 21 20 18 23 23 N 1.32685 * 120.69723 * 359.69462 * 13 12 11 24 24 C 1.31665 * 121.68586 * 0.02562 * 23 13 12 25 25 H 0.97000 * 119.99792 * 179.97438 * 1 2 3 26 26 H 1.08000 * 120.77242 * 359.97438 * 11 10 9 27 27 H 1.07991 * 120.42844 * 180.23540 * 12 11 10 28 28 H 1.07995 * 120.06695 * 0.02562 * 15 14 13 29 29 H 1.07998 * 119.89719 * 180.23183 * 16 15 14 30 30 H 1.08001 * 120.04011 * 179.97438 * 19 18 17 31 31 H 1.09001 * 110.20528 * 101.52633 * 20 18 17 32 32 H 1.08995 * 110.20746 * 223.42705 * 20 18 17 33 33 H 1.00905 * 111.00173 * 147.02662 * 21 20 18 34 34 H 1.09001 * 110.21078 * 213.27379 * 22 21 20 35 35 H 1.09009 * 110.27495 * 91.41553 * 22 21 20 36 36 H 1.07997 * 119.60400 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 1.2845 2.7465 -0.0006 5 1 3.1032 1.6965 1.2125 6 1 3.1032 1.6965 -1.2125 7 6 2.0089 -1.2007 0.0057 8 1 3.0889 -1.2007 0.0061 9 8 1.3348 -2.3683 0.0118 10 6 2.0699 -3.5045 -0.0898 11 6 3.4629 -3.4461 -0.0859 12 6 4.1719 -4.6284 -0.1858 13 6 3.4749 -5.8308 -0.2984 14 6 4.2243 -7.1052 -0.4124 15 6 5.6185 -7.0996 -0.4134 16 6 6.3104 -8.2890 -0.5144 17 6 5.6249 -9.4852 -0.6264 18 6 4.2394 -9.4961 -0.6313 19 6 3.5379 -8.3129 -0.5249 20 6 3.7777 -10.9298 -0.7651 21 7 4.9512 -11.6830 -1.2624 22 6 6.1092 -10.9119 -0.7566 23 7 2.1482 -5.8467 -0.3039 24 6 1.4429 -4.7393 -0.2049 25 1 -0.4850 -0.8401 -0.0004 26 1 3.9760 -2.4994 -0.0028 27 1 5.2518 -4.6205 -0.1822 28 1 6.1558 -6.1665 -0.3307 29 1 7.3904 -8.2855 -0.5114 30 1 2.4579 -8.3224 -0.5293 31 1 3.4654 -11.3168 0.2048 32 1 2.9574 -10.9960 -1.4797 33 1 4.9571 -12.6243 -0.8992 34 1 6.9359 -10.9657 -1.4650 35 1 6.4216 -11.2936 0.2155 36 1 0.3642 -4.7914 -0.2126 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242676552.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:05 Heat of formation + Delta-G solvation = 38.188763 kcal Electronic energy + Delta-G solvation = -20218.790439 eV Core-core repulsion = 17054.255044 eV Total energy + Delta-G solvation = -3164.535395 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.35035 -39.58665 -37.63468 -36.12622 -32.66862 -31.73900 -31.62120 -30.66002 -28.55312 -27.27630 -25.38772 -23.83013 -22.90712 -22.12550 -21.18934 -20.37239 -18.63051 -17.35055 -16.90886 -15.96878 -15.85658 -15.51567 -15.26546 -14.32560 -14.25873 -14.05680 -13.87692 -13.69030 -13.51015 -13.16154 -12.93539 -12.87071 -12.64814 -12.23687 -11.91851 -11.76593 -11.24426 -11.03914 -10.80491 -10.69690 -10.42041 -9.99860 -9.43615 -9.17640 -9.02569 -8.90312 -8.73727 -8.41359 -7.29354 -7.02074 -4.28396 0.98490 1.46990 1.90555 2.24909 3.12577 3.16902 3.33675 3.78268 3.92398 4.02453 4.35090 4.44986 4.56667 4.60629 4.89082 4.98116 5.06532 5.15494 5.20411 5.28960 5.34437 5.42868 5.52761 5.59389 5.71067 5.82884 5.92459 6.00460 6.15674 6.20390 6.33736 6.42968 6.59555 6.68140 6.83152 6.88599 6.96551 7.04659 7.22976 7.31246 8.12487 8.57187 8.65436 9.28331 10.41338 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.047192 B = 0.003044 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.184371 B = 9195.497405 C = 9752.229374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.014 3.986 3 Si 1.096 2.904 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.471 4.471 8 H 0.087 0.913 9 O -0.182 6.182 10 C 0.110 3.890 11 C -0.198 4.198 12 C -0.098 4.098 13 C 0.039 3.961 14 C 0.002 3.998 15 C -0.119 4.119 16 C -0.097 4.097 17 C -0.122 4.122 18 C -0.106 4.106 19 C -0.079 4.079 20 C 0.081 3.919 21 N -0.661 5.661 22 C 0.083 3.917 23 N -0.430 5.430 24 C 0.033 3.967 25 H 0.285 0.715 26 H 0.140 0.860 27 H 0.123 0.877 28 H 0.128 0.872 29 H 0.121 0.879 30 H 0.133 0.867 31 H 0.056 0.944 32 H 0.090 0.910 33 H 0.343 0.657 34 H 0.087 0.913 35 H 0.054 0.946 36 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.952 -15.678 0.099 19.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.193 4.193 3 Si 0.919 3.081 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.547 4.547 8 H 0.105 0.895 9 O -0.083 6.083 10 C 0.052 3.948 11 C -0.224 4.224 12 C -0.118 4.118 13 C -0.095 4.095 14 C 0.002 3.998 15 C -0.138 4.138 16 C -0.115 4.115 17 C -0.123 4.123 18 C -0.107 4.107 19 C -0.098 4.098 20 C -0.047 4.047 21 N -0.289 5.289 22 C -0.045 4.045 23 N -0.140 5.140 24 C -0.131 4.131 25 H 0.096 0.904 26 H 0.157 0.843 27 H 0.141 0.859 28 H 0.145 0.855 29 H 0.139 0.861 30 H 0.150 0.850 31 H 0.075 0.925 32 H 0.108 0.892 33 H 0.158 0.842 34 H 0.105 0.895 35 H 0.072 0.928 36 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 10.033 -14.474 -0.666 17.624 hybrid contribution 0.799 -0.983 1.090 1.671 sum 10.833 -15.456 0.424 18.879 Atomic orbital electron populations 1.70578 1.06639 1.32048 1.40307 1.26691 0.96760 1.01316 0.94539 0.83102 0.74605 0.73049 0.77337 1.19510 1.20475 1.20472 1.22333 0.93366 0.81970 1.57027 0.89512 1.83641 1.35575 1.12218 1.76887 1.20395 0.91047 0.88703 0.94617 1.21480 0.93804 0.99056 1.08087 1.21712 0.99958 0.92074 0.98056 1.19039 0.89343 0.91436 1.09643 1.18386 0.92095 0.91366 0.97998 1.21098 0.93205 0.97921 1.01528 1.20263 0.99379 0.90738 1.01155 1.20487 0.94522 0.94577 1.02711 1.20410 0.94336 0.94600 1.01349 1.20547 1.00595 0.89677 0.98996 1.21374 0.94534 0.89644 0.99187 1.63481 1.01766 1.05055 1.58566 1.21345 0.94670 0.89707 0.98816 1.67311 1.07240 1.29758 1.09655 1.21727 0.99629 0.85290 1.06489 0.90434 0.84280 0.85885 0.85461 0.86137 0.84951 0.92550 0.89185 0.84162 0.89502 0.92790 0.83071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.56 13.70 55.48 0.76 -23.80 16 2 C 0.01 0.38 5.49 -17.52 -0.10 0.28 16 3 Si 1.10 22.28 29.92 -169.99 -5.09 17.20 16 4 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 5 H -0.28 -5.32 7.11 56.52 0.40 -4.92 16 6 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 7 C -0.47 -12.51 9.49 30.89 0.29 -12.22 16 8 H 0.09 2.14 5.25 -52.49 -0.28 1.87 16 9 O -0.18 -4.84 9.17 0.23 0.00 -4.84 16 10 C 0.11 2.55 6.67 -38.87 -0.26 2.29 16 11 C -0.20 -4.16 9.25 -39.15 -0.36 -4.53 16 12 C -0.10 -1.80 9.45 -39.14 -0.37 -2.17 16 13 C 0.04 0.75 6.73 -82.92 -0.56 0.19 16 14 C 0.00 0.04 5.88 -104.91 -0.62 -0.58 16 15 C -0.12 -1.65 9.42 -39.24 -0.37 -2.02 16 16 C -0.10 -1.19 10.03 -39.65 -0.40 -1.59 16 17 C -0.12 -1.54 6.26 -104.21 -0.65 -2.19 16 18 C -0.11 -1.45 6.25 -104.35 -0.65 -2.10 16 19 C -0.08 -1.23 9.57 -39.26 -0.38 -1.61 16 20 C 0.08 0.87 7.45 -4.10 -0.03 0.84 16 21 N -0.66 -6.46 7.71 -114.01 -0.88 -7.34 16 22 C 0.08 0.82 7.45 -4.09 -0.03 0.78 16 23 N -0.43 -8.72 9.42 -9.61 -0.09 -8.81 16 24 C 0.03 0.69 11.14 -17.35 -0.19 0.50 16 25 H 0.29 8.24 7.97 -40.82 -0.33 7.92 16 26 H 0.14 2.84 5.75 -52.49 -0.30 2.54 16 27 H 0.12 1.83 6.18 -52.49 -0.32 1.50 16 28 H 0.13 1.54 6.18 -52.49 -0.32 1.22 16 29 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 30 H 0.13 2.09 7.53 -52.49 -0.40 1.70 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.34 2.40 8.92 -39.29 -0.35 2.05 16 34 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.05 0.45 8.14 -51.92 -0.42 0.02 16 36 H 0.15 2.94 8.06 -52.49 -0.42 2.52 16 LS Contribution 308.23 15.07 4.65 4.65 Total: -1.00 -30.03 308.23 -8.95 -38.98 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -3.63 Total: 8.07 kcal Atomic # 6 Polarization: -19.43 SS G_CDS: -4.67 Total: -24.10 kcal Atomic # 7 Polarization: -39.75 SS G_CDS: -0.21 Total: -39.96 kcal Atomic # 8 Polarization: -4.84 SS G_CDS: 0.00 Total: -4.84 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.09 Total: 17.20 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.03 -8.95 -38.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242676552.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.170 kcal (2) G-P(sol) polarization free energy of solvation -30.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds