Wall clock time and date at job start Tue Mar 31 2020 05:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30758 * 1 3 3 Si 1.86800 * 119.99976 * 2 1 4 4 H 1.48504 * 109.47018 * 240.00331 * 3 2 1 5 5 H 1.48501 * 109.47003 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47353 * 120.00179 * 3 2 1 7 7 C 1.40076 * 119.99953 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99452 * 197.47530 * 7 2 1 9 9 C 1.41058 * 119.99933 * 17.47330 * 7 2 1 10 10 C 1.41278 * 120.56064 * 23.79364 * 9 7 2 11 11 C 1.36666 * 118.40247 * 180.26353 * 10 9 7 12 12 C 1.39829 * 119.46576 * 359.51177 * 11 10 9 13 13 C 1.48064 * 119.43896 * 180.25434 * 12 11 10 14 14 C 1.40111 * 120.89843 * 359.71672 * 13 12 11 15 15 C 1.37817 * 119.12272 * 179.77131 * 14 13 12 16 16 N 1.32011 * 120.98083 * 0.52345 * 15 14 13 17 17 C 1.32282 * 121.98037 * 359.73153 * 16 15 14 18 18 O 1.35693 * 119.61607 * 180.02562 * 17 16 15 19 19 C 1.42898 * 116.99782 * 359.97416 * 18 17 16 20 20 C 1.52999 * 117.49979 * 218.61982 * 19 18 17 21 21 C 1.52994 * 60.00355 * 252.51553 * 20 19 18 22 22 C 1.38707 * 120.76421 * 0.02562 * 17 16 15 23 23 N 1.32980 * 121.11308 * 0.28178 * 12 11 10 24 24 C 1.31248 * 121.73648 * 359.96979 * 23 12 11 25 25 H 0.97003 * 119.99932 * 0.02562 * 1 2 3 26 26 H 1.08001 * 120.79628 * 0.05390 * 10 9 7 27 27 H 1.07996 * 120.26345 * 179.78918 * 11 10 9 28 28 H 1.08003 * 120.43862 * 0.02732 * 14 13 12 29 29 H 1.08007 * 119.50646 * 180.25331 * 15 14 13 30 30 H 1.08998 * 115.55143 * 4.33801 * 19 18 17 31 31 H 1.09005 * 117.49761 * 0.02562 * 20 19 18 32 32 H 1.08995 * 117.49848 * 145.02027 * 20 19 18 33 33 H 1.08999 * 117.49919 * 252.51312 * 21 20 19 34 34 H 1.09000 * 117.50083 * 107.48446 * 21 20 19 35 35 H 1.08004 * 120.52622 * 179.97438 * 22 17 16 36 36 H 1.08003 * 119.80138 * 180.02562 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 3.0953 1.6964 -1.2126 5 1 1.2765 2.7464 -0.0006 6 1 3.0954 1.6964 1.2125 7 6 2.0079 -1.2131 -0.0005 8 1 3.0506 -1.2347 0.2803 9 6 1.3514 -2.4063 -0.3679 10 6 0.2030 -2.3706 -1.1899 11 6 -0.4014 -3.5527 -1.5142 12 6 0.1344 -4.7528 -1.0368 13 6 -0.5176 -6.0335 -1.3931 14 6 -1.6655 -6.0575 -2.1961 15 6 -2.2398 -7.2706 -2.5092 16 7 -1.7302 -8.4009 -2.0559 17 6 -0.6513 -8.4259 -1.2910 18 8 -0.1679 -9.6154 -0.8520 19 6 -0.8739 -10.7908 -1.2545 20 6 -1.0198 -11.9142 -0.2261 21 6 -0.0665 -12.0810 -1.4110 22 6 -0.0083 -7.2503 -0.9324 23 7 1.2192 -4.7632 -0.2677 24 6 1.8327 -3.6549 0.0756 25 1 -0.4850 0.8401 -0.0004 26 1 -0.1899 -1.4314 -1.5505 27 1 -1.2830 -3.5601 -2.1379 28 1 -2.0923 -5.1378 -2.5683 29 1 -3.1224 -7.2966 -3.1312 30 1 -1.7022 -10.6287 -1.9443 31 1 -0.5777 -11.7565 0.7577 32 1 -1.9444 -12.4912 -0.2389 33 1 -0.3638 -12.7678 -2.2034 34 1 1.0032 -12.0331 -1.2070 35 1 0.8721 -7.2752 -0.3073 36 1 2.7118 -3.6997 0.7014 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242720459.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:58 Heat of formation + Delta-G solvation = 49.639563 kcal Electronic energy + Delta-G solvation = -20153.184112 eV Core-core repulsion = 16989.145261 eV Total energy + Delta-G solvation = -3164.038851 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.18005 -38.68693 -37.84361 -35.22608 -34.50023 -32.48428 -30.96755 -29.90681 -29.43968 -26.04279 -23.71157 -23.19315 -22.52298 -21.98728 -21.32787 -20.43064 -18.19700 -17.63725 -16.50424 -15.96761 -15.35823 -15.11809 -15.02532 -14.85417 -14.29107 -14.13963 -13.87969 -13.51509 -12.94425 -12.64831 -12.31355 -12.26931 -11.89520 -11.78691 -11.66421 -11.57328 -11.30146 -11.21132 -10.83024 -10.57208 -10.07990 -10.00528 -9.77393 -9.32106 -9.19536 -8.48671 -8.22987 -8.04617 -7.60286 -7.14970 -4.71801 1.40583 1.67604 2.60079 2.84100 2.87089 2.88988 3.09159 3.11254 3.62814 3.74074 4.17645 4.52222 4.55893 4.81517 4.86240 5.07020 5.14862 5.48995 5.49717 5.51117 5.57218 5.72825 5.75762 5.90476 5.98262 6.00637 6.20092 6.35389 6.45705 6.53418 6.69464 6.76808 6.90218 6.99514 7.09856 7.51691 7.61752 7.63045 7.73739 8.16761 8.28997 8.34958 8.45856 9.41783 9.71809 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.043470 B = 0.003086 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.964683 B = 9071.074138 C = 9567.815601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.071 3.929 3 Si 0.919 3.081 4 H -0.259 1.259 5 H -0.274 1.274 6 H -0.260 1.260 7 C -0.424 4.424 8 H 0.090 0.910 9 C 0.072 3.928 10 C -0.150 4.150 11 C -0.109 4.109 12 C -0.026 4.026 13 C 0.097 3.903 14 C -0.223 4.223 15 C 0.134 3.866 16 N -0.567 5.567 17 C 0.317 3.683 18 O -0.279 6.279 19 C 0.020 3.980 20 C -0.186 4.186 21 C -0.182 4.182 22 C -0.187 4.187 23 N -0.439 5.439 24 C -0.014 4.014 25 H 0.290 0.710 26 H 0.129 0.871 27 H 0.104 0.896 28 H 0.134 0.866 29 H 0.152 0.848 30 H 0.138 0.862 31 H 0.100 0.900 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.100 0.900 35 H 0.144 0.856 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.020 -9.272 -3.226 10.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.151 4.151 3 Si 0.742 3.258 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.184 1.184 7 C -0.452 4.452 8 H 0.108 0.892 9 C 0.067 3.933 10 C -0.174 4.174 11 C -0.129 4.129 12 C -0.158 4.158 13 C 0.089 3.911 14 C -0.245 4.245 15 C -0.020 4.020 16 N -0.292 5.292 17 C 0.140 3.860 18 O -0.187 6.187 19 C -0.037 4.037 20 C -0.223 4.223 21 C -0.219 4.219 22 C -0.208 4.208 23 N -0.146 5.146 24 C -0.181 4.181 25 H 0.102 0.898 26 H 0.146 0.854 27 H 0.122 0.878 28 H 0.151 0.849 29 H 0.169 0.831 30 H 0.155 0.845 31 H 0.119 0.881 32 H 0.120 0.880 33 H 0.121 0.879 34 H 0.119 0.881 35 H 0.161 0.839 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -3.131 -10.773 -2.989 11.610 hybrid contribution 0.185 2.365 -0.080 2.374 sum -2.946 -8.408 -3.068 9.423 Atomic orbital electron populations 1.69755 1.07999 1.30583 1.30711 1.26163 0.94905 1.02216 0.91865 0.86164 0.80151 0.78978 0.80512 1.18335 1.19918 1.18442 1.19768 0.98359 0.90905 1.36176 0.89201 1.18663 0.91939 0.93710 0.88991 1.21337 0.98817 0.97053 1.00222 1.21279 0.98951 0.93154 0.99546 1.18525 0.98534 0.90068 1.08697 1.18772 0.90818 0.91712 0.89785 1.21981 0.98833 0.99369 1.04270 1.22037 0.97644 0.86582 0.95748 1.66964 1.13646 1.32147 1.16408 1.19568 0.89938 0.85220 0.91304 1.86176 1.51413 1.11831 1.69238 1.22856 0.98959 0.80054 1.01837 1.23398 1.01687 1.01552 0.95699 1.23367 0.98963 0.98834 1.00726 1.21054 1.04200 0.88814 1.06751 1.66868 1.06354 1.32301 1.09093 1.22484 1.02666 0.87627 1.05325 0.89846 0.85376 0.87818 0.84857 0.83089 0.84491 0.88132 0.87990 0.87915 0.88111 0.83862 0.85051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.73 10.92 55.55 0.61 -17.13 16 2 C 0.07 1.57 5.17 -17.32 -0.09 1.48 16 3 Si 0.92 16.49 29.59 -169.99 -5.03 11.46 16 4 H -0.26 -4.64 7.11 56.52 0.40 -4.24 16 5 H -0.27 -4.81 7.11 56.52 0.40 -4.41 16 6 H -0.26 -4.62 7.11 56.52 0.40 -4.22 16 7 C -0.42 -10.04 9.07 -37.82 -0.34 -10.38 16 8 H 0.09 1.99 7.91 -52.48 -0.41 1.57 16 9 C 0.07 1.78 5.59 -106.64 -0.60 1.19 16 10 C -0.15 -3.61 8.74 -39.00 -0.34 -3.95 16 11 C -0.11 -2.43 9.40 -39.55 -0.37 -2.81 16 12 C -0.03 -0.59 6.74 -82.74 -0.56 -1.15 16 13 C 0.10 1.98 5.91 -104.61 -0.62 1.37 16 14 C -0.22 -3.84 9.48 -39.03 -0.37 -4.21 16 15 C 0.13 2.09 11.16 -17.63 -0.20 1.89 16 16 N -0.57 -9.75 8.56 -13.42 -0.11 -9.86 16 17 C 0.32 5.87 7.48 -17.18 -0.13 5.74 16 18 O -0.28 -4.82 10.37 -18.78 -0.19 -5.01 16 19 C 0.02 0.28 6.36 -26.73 -0.17 0.11 16 20 C -0.19 -2.01 10.48 -26.73 -0.28 -2.29 16 21 C -0.18 -1.94 10.48 -26.73 -0.28 -2.22 16 22 C -0.19 -3.74 9.59 -38.85 -0.37 -4.12 16 23 N -0.44 -10.59 9.48 -9.09 -0.09 -10.68 16 24 C -0.01 -0.33 10.97 -16.77 -0.18 -0.51 16 25 H 0.29 6.03 8.29 -40.82 -0.34 5.69 16 26 H 0.13 3.09 6.19 -52.49 -0.33 2.77 16 27 H 0.10 2.01 6.24 -52.49 -0.33 1.68 16 28 H 0.13 2.05 6.28 -52.48 -0.33 1.72 16 29 H 0.15 1.77 8.06 -52.48 -0.42 1.35 16 30 H 0.14 1.87 6.85 -51.93 -0.36 1.52 16 31 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.14 2.96 7.62 -52.48 -0.40 2.56 16 36 H 0.13 2.87 8.06 -52.48 -0.42 2.45 16 LS Contribution 314.95 15.07 4.75 4.75 Total: -1.00 -26.84 314.95 -8.80 -35.63 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -3.82 Total: 10.70 kcal Atomic # 6 Polarization: -14.97 SS G_CDS: -4.90 Total: -19.87 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: 0.41 Total: -37.67 kcal Atomic # 8 Polarization: -4.82 SS G_CDS: -0.19 Total: -5.01 kcal Atomic # 14 Polarization: 16.49 SS G_CDS: -5.03 Total: 11.46 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -26.84 -8.80 -35.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242720459.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.274 kcal (2) G-P(sol) polarization free energy of solvation -26.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds