Wall clock time and date at job start Tue Mar 31 2020 05:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30685 * 1 3 3 Si 1.86795 * 119.99822 * 2 1 4 4 H 1.48502 * 109.47274 * 270.27684 * 3 2 1 5 5 H 1.48504 * 109.47383 * 30.27356 * 3 2 1 6 6 H 1.48502 * 109.47297 * 150.27318 * 3 2 1 7 7 C 1.40145 * 120.00084 * 180.27422 * 2 1 3 8 8 H 1.07999 * 119.99937 * 179.72769 * 7 2 1 9 9 C 1.41036 * 119.99863 * 359.72586 * 7 2 1 10 10 C 1.40842 * 119.68253 * 179.72426 * 9 7 2 11 11 C 1.36739 * 119.24666 * 179.76532 * 10 9 7 12 12 C 1.40224 * 118.60349 * 0.50099 * 11 10 9 13 13 C 1.48030 * 120.34290 * 179.76390 * 12 11 10 14 14 C 1.40149 * 120.89702 * 359.69664 * 13 12 11 15 15 C 1.37790 * 119.12021 * 179.77272 * 14 13 12 16 16 N 1.32028 * 120.97761 * 0.51785 * 15 14 13 17 17 C 1.32293 * 121.98870 * 359.73363 * 16 15 14 18 18 O 1.35689 * 119.61842 * 179.97438 * 17 16 15 19 19 C 1.42893 * 117.00158 * 0.02562 * 18 17 16 20 20 C 1.53002 * 117.50284 * 218.75168 * 19 18 17 21 21 C 1.53007 * 117.50258 * 150.08952 * 19 18 17 22 22 C 1.38676 * 120.76603 * 0.02562 * 17 16 15 23 23 C 1.40047 * 119.31252 * 359.74324 * 12 11 10 24 24 N 1.31203 * 120.69638 * 359.97438 * 23 12 11 25 25 H 0.97000 * 120.00374 * 359.72781 * 1 2 3 26 26 H 1.08001 * 120.37754 * 0.02667 * 10 9 7 27 27 H 1.08004 * 120.70106 * 180.24472 * 11 10 9 28 28 H 1.08000 * 120.43801 * 0.02562 * 14 13 12 29 29 H 1.08000 * 119.51083 * 180.25636 * 15 14 13 30 30 H 1.09007 * 115.54963 * 4.41701 * 19 18 17 31 31 H 1.09003 * 117.49420 * 359.97438 * 20 19 18 32 32 H 1.08996 * 117.50327 * 145.01504 * 20 19 18 33 33 H 1.08997 * 117.49339 * 214.97971 * 21 19 18 34 34 H 1.08996 * 117.49150 * 0.02562 * 21 19 18 35 35 H 1.08002 * 120.53144 * 180.02562 * 22 17 16 36 36 H 1.07999 * 119.65521 * 180.02562 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.4824 2.0498 -1.4001 5 1 1.4411 2.6510 0.7058 6 1 3.5412 1.4386 0.6942 7 6 2.0076 -1.2137 -0.0058 8 1 3.0876 -1.2136 -0.0103 9 6 1.3024 -2.4351 -0.0058 10 6 2.0133 -3.6509 -0.0176 11 6 1.3207 -4.8298 -0.0126 12 6 -0.0808 -4.7850 -0.0066 13 6 -0.8691 -6.0380 -0.0064 14 6 -0.2344 -7.2875 -0.0184 15 6 -1.0039 -8.4305 -0.0129 16 7 -2.3224 -8.3621 -0.0069 17 6 -2.9641 -7.2052 -0.0005 18 8 -4.3209 -7.1910 0.0051 19 6 -4.9829 -8.4573 0.0042 20 6 -6.2517 -8.5906 -0.8405 21 6 -6.3501 -8.5403 0.6863 22 6 -2.2661 -6.0069 -0.0005 23 6 -0.7271 -3.5426 -0.0005 24 7 -0.0353 -2.4278 0.0003 25 1 -0.4851 0.8400 0.0040 26 1 3.0933 -3.6520 -0.0261 27 1 1.8420 -5.7757 -0.0174 28 1 0.8435 -7.3536 -0.0277 29 1 -0.5213 -9.3967 -0.0180 30 1 -4.3315 -9.3284 0.0749 31 1 -6.5815 -7.7122 -1.3952 32 1 -6.4352 -9.5495 -1.3252 33 1 -6.5981 -9.4661 1.2053 34 1 -6.7445 -7.6288 1.1353 35 1 -2.7939 -5.0646 0.0051 36 1 -1.8063 -3.5017 0.0046 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242723979.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:29 Heat of formation + Delta-G solvation = 58.546357 kcal Electronic energy + Delta-G solvation = -20205.064322 eV Core-core repulsion = 17041.411698 eV Total energy + Delta-G solvation = -3163.652624 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.18036 -38.61616 -37.81343 -35.23343 -34.16602 -32.59230 -30.95609 -29.74266 -29.36144 -26.10150 -23.64649 -23.31719 -22.53302 -21.85461 -21.39253 -20.32859 -18.07701 -17.78825 -16.55179 -15.82824 -15.54084 -15.09865 -15.00463 -14.63609 -14.22984 -14.18913 -13.77967 -13.29270 -12.79171 -12.71654 -12.41599 -12.27330 -12.21482 -11.67440 -11.43716 -11.40402 -11.10404 -11.05417 -10.68829 -10.52806 -10.18177 -10.11517 -9.90947 -9.30082 -9.19150 -8.43432 -8.06989 -7.79624 -7.52275 -6.70117 -4.77992 1.43917 1.67281 2.69430 2.93361 2.93607 2.96834 3.10343 3.10790 3.72075 3.73826 4.27398 4.56170 4.61038 4.80951 4.85279 5.07205 5.32655 5.48458 5.52654 5.57065 5.66297 5.70148 5.73719 5.87540 5.89429 5.97519 6.14388 6.20368 6.42026 6.48869 6.57532 6.81591 6.84254 6.93604 7.16063 7.40628 7.56761 7.62802 7.77585 7.93431 8.30930 8.32744 8.62390 9.83635 9.99223 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.029435 B = 0.003339 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.017332 B = 8382.638523 C = 9255.488646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.692 5.692 2 C 0.060 3.940 3 Si 0.914 3.086 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.258 1.258 7 C -0.396 4.396 8 H 0.091 0.909 9 C 0.250 3.750 10 C -0.272 4.272 11 C -0.026 4.026 12 C -0.290 4.290 13 C 0.107 3.893 14 C -0.236 4.236 15 C 0.139 3.861 16 N -0.575 5.575 17 C 0.326 3.674 18 O -0.280 6.280 19 C 0.021 3.979 20 C -0.186 4.186 21 C -0.182 4.182 22 C -0.222 4.222 23 C 0.170 3.830 24 N -0.489 5.489 25 H 0.280 0.720 26 H 0.103 0.897 27 H 0.102 0.898 28 H 0.129 0.871 29 H 0.149 0.851 30 H 0.138 0.862 31 H 0.100 0.900 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.136 0.864 36 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.840 -9.932 -0.018 11.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.311 5.311 2 C -0.169 4.169 3 Si 0.737 3.263 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.182 1.182 7 C -0.425 4.425 8 H 0.109 0.891 9 C 0.128 3.872 10 C -0.294 4.294 11 C -0.049 4.049 12 C -0.296 4.296 13 C 0.099 3.901 14 C -0.257 4.257 15 C -0.015 4.015 16 N -0.301 5.301 17 C 0.149 3.851 18 O -0.187 6.187 19 C -0.037 4.037 20 C -0.224 4.224 21 C -0.219 4.219 22 C -0.242 4.242 23 C -0.001 4.001 24 N -0.201 5.201 25 H 0.091 0.909 26 H 0.121 0.879 27 H 0.120 0.880 28 H 0.147 0.853 29 H 0.166 0.834 30 H 0.155 0.845 31 H 0.119 0.881 32 H 0.120 0.880 33 H 0.121 0.879 34 H 0.119 0.881 35 H 0.153 0.847 36 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -6.056 -9.455 -0.011 11.228 hybrid contribution 1.255 0.393 -0.016 1.315 sum -4.801 -9.062 -0.027 10.255 Atomic orbital electron populations 1.70096 1.07475 1.28751 1.24746 1.26260 0.95087 1.01722 0.93786 0.86197 0.80479 0.79997 0.79582 1.19038 1.19740 1.18218 1.19916 0.94833 0.89567 1.38187 0.89126 1.18714 0.88633 0.92019 0.87809 1.21454 0.99023 0.93454 1.15463 1.20652 0.92816 0.96917 0.94559 1.18882 0.93140 0.91859 1.25696 1.18937 0.91101 0.93185 0.86896 1.21934 1.01067 0.92535 1.10191 1.22028 0.87643 0.98113 0.93698 1.66982 1.11912 1.27662 1.23499 1.19488 0.83075 0.90007 0.92525 1.86167 1.15436 1.29876 1.87267 1.22855 0.88373 0.87728 1.04696 1.23413 1.01279 1.03673 0.93989 1.23381 0.99368 1.03784 0.95361 1.20950 0.93536 0.96801 1.12956 1.22815 0.98852 0.87786 0.90691 1.68833 1.07058 1.26243 1.17949 0.90865 0.87875 0.88047 0.85285 0.83390 0.84500 0.88131 0.87997 0.87917 0.88098 0.84667 0.85739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -17.23 11.44 55.56 0.64 -16.59 16 2 C 0.06 1.41 5.50 -17.32 -0.10 1.32 16 3 Si 0.91 17.10 29.56 -169.99 -5.02 12.08 16 4 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 5 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 6 H -0.26 -4.74 7.11 56.52 0.40 -4.33 16 7 C -0.40 -9.82 9.12 -37.81 -0.34 -10.16 16 8 H 0.09 2.06 7.85 -52.49 -0.41 1.65 16 9 C 0.25 6.45 6.55 -84.98 -0.56 5.90 16 10 C -0.27 -6.24 9.77 -39.14 -0.38 -6.63 16 11 C -0.03 -0.56 9.49 -39.38 -0.37 -0.93 16 12 C -0.29 -6.31 5.92 -104.46 -0.62 -6.93 16 13 C 0.11 2.07 5.91 -104.60 -0.62 1.45 16 14 C -0.24 -3.97 9.51 -39.03 -0.37 -4.34 16 15 C 0.14 2.14 11.16 -17.63 -0.20 1.94 16 16 N -0.58 -9.76 8.56 -13.43 -0.11 -9.88 16 17 C 0.33 5.87 7.48 -17.19 -0.13 5.74 16 18 O -0.28 -4.72 10.37 -18.77 -0.19 -4.91 16 19 C 0.02 0.28 6.36 -26.73 -0.17 0.11 16 20 C -0.19 -1.99 10.48 -26.69 -0.28 -2.27 16 21 C -0.18 -1.92 10.48 -26.69 -0.28 -2.20 16 22 C -0.22 -4.17 9.44 -38.86 -0.37 -4.54 16 23 C 0.17 3.99 10.62 -17.14 -0.18 3.81 16 24 N -0.49 -12.89 7.84 -10.85 -0.09 -12.97 16 25 H 0.28 6.25 8.29 -40.82 -0.34 5.91 16 26 H 0.10 2.15 8.06 -52.49 -0.42 1.72 16 27 H 0.10 1.83 6.38 -52.48 -0.34 1.49 16 28 H 0.13 1.94 6.38 -52.49 -0.34 1.60 16 29 H 0.15 1.74 8.06 -52.49 -0.42 1.31 16 30 H 0.14 1.86 6.86 -51.93 -0.36 1.50 16 31 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 35 H 0.14 2.47 6.35 -52.49 -0.33 2.14 16 36 H 0.13 2.67 6.30 -52.49 -0.33 2.34 16 LS Contribution 313.98 15.07 4.73 4.73 Total: -1.00 -28.04 313.98 -8.79 -36.83 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -3.77 Total: 8.45 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: -4.96 Total: -17.74 kcal Atomic # 7 Polarization: -39.88 SS G_CDS: 0.44 Total: -39.44 kcal Atomic # 8 Polarization: -4.72 SS G_CDS: -0.19 Total: -4.91 kcal Atomic # 14 Polarization: 17.10 SS G_CDS: -5.02 Total: 12.08 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -28.04 -8.79 -36.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242723979.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.372 kcal (2) G-P(sol) polarization free energy of solvation -28.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds