Wall clock time and date at job start Tue Mar 31 2020 05:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86795 * 119.99919 * 2 1 4 4 H 1.48503 * 109.47137 * 239.99960 * 3 2 1 5 5 H 1.48501 * 109.47160 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47226 * 119.99838 * 3 2 1 7 7 C 1.39940 * 119.99879 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99765 * 197.54143 * 7 2 1 9 9 C 1.41431 * 119.99953 * 17.54708 * 7 2 1 10 10 C 1.40810 * 120.60676 * 203.72619 * 9 7 2 11 11 N 1.31493 * 120.66557 * 180.26396 * 10 9 7 12 12 C 1.31933 * 122.12564 * 359.74421 * 11 10 9 13 13 C 1.39666 * 121.15311 * 0.02562 * 12 11 10 14 14 C 1.48406 * 120.40979 * 179.97438 * 13 12 11 15 15 C 1.39914 * 120.86917 * 179.74049 * 14 13 12 16 16 C 1.37826 * 119.14975 * 179.72398 * 15 14 13 17 17 N 1.32018 * 120.95404 * 0.55884 * 16 15 14 18 18 C 1.32291 * 121.92493 * 359.71594 * 17 16 15 19 19 O 1.35684 * 119.63031 * 179.97438 * 18 17 16 20 20 C 1.42902 * 116.99666 * 0.02562 * 19 18 17 21 21 C 1.53004 * 117.49479 * 218.74586 * 20 19 18 22 22 C 1.52999 * 117.49851 * 150.08962 * 20 19 18 23 23 C 1.38714 * 120.73946 * 359.97438 * 18 17 16 24 24 C 1.39183 * 119.17761 * 359.97438 * 13 12 11 25 25 H 0.97000 * 119.99933 * 359.97438 * 1 2 3 26 26 H 1.08005 * 119.66405 * 359.97438 * 10 9 7 27 27 H 1.08006 * 119.42667 * 180.02562 * 12 11 10 28 28 H 1.08005 * 120.42493 * 359.97438 * 15 14 13 29 29 H 1.07998 * 119.52418 * 180.29614 * 16 15 14 30 30 H 1.09000 * 115.55322 * 4.41077 * 20 19 18 31 31 H 1.08999 * 117.49664 * 0.02562 * 21 20 19 32 32 H 1.08999 * 117.50028 * 145.01578 * 21 20 19 33 33 H 1.09003 * 117.50076 * 214.97497 * 22 20 19 34 34 H 1.09003 * 117.49949 * 359.97438 * 22 20 19 35 35 H 1.08003 * 120.51248 * 180.02562 * 23 18 17 36 36 H 1.08001 * 120.95593 * 179.97438 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2772 2.7464 0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0080 -1.2119 0.0005 8 1 3.0504 -1.2335 0.2825 9 6 1.3501 -2.4084 -0.3682 10 6 1.8278 -3.6558 0.0774 11 7 1.2202 -4.7693 -0.2690 12 6 0.1462 -4.7733 -1.0353 13 6 -0.4004 -3.5828 -1.5195 14 6 -1.6087 -3.6066 -2.3809 15 6 -2.1674 -2.4194 -2.8668 16 6 -3.2865 -2.4831 -3.6687 17 7 -3.8395 -3.6430 -3.9719 18 6 -3.3481 -4.7890 -3.5301 19 8 -3.9542 -5.9543 -3.8702 20 6 -5.1112 -5.8645 -4.7041 21 6 -6.2700 -6.8193 -4.4097 22 6 -5.3951 -7.0354 -5.6470 23 6 -2.2203 -4.8127 -2.7229 24 6 0.2022 -2.3738 -1.1843 25 1 -0.4850 0.8401 0.0004 26 1 2.7050 -3.6987 0.7061 27 1 -0.3185 -5.7137 -1.2926 28 1 -1.7249 -1.4656 -2.6201 29 1 -3.7199 -1.5708 -4.0510 30 1 -5.3609 -4.8633 -5.0555 31 1 -6.1499 -7.5156 -3.5798 32 1 -7.2819 -6.4464 -4.5678 33 1 -5.8318 -6.8048 -6.6187 34 1 -4.6991 -7.8742 -5.6316 35 1 -1.8220 -5.7505 -2.3646 36 1 -0.1960 -1.4362 -1.5432 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242724249.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:10 Heat of formation + Delta-G solvation = 50.480499 kcal Electronic energy + Delta-G solvation = -20450.993594 eV Core-core repulsion = 17286.991208 eV Total energy + Delta-G solvation = -3164.002386 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.35901 -38.72988 -37.91449 -35.30997 -34.26309 -33.22760 -30.67526 -29.92472 -29.11605 -25.81592 -24.15004 -23.33510 -22.58952 -22.04120 -21.39998 -20.37207 -18.30985 -17.20685 -16.64246 -16.13577 -15.44426 -15.21978 -15.11229 -14.81244 -14.67489 -14.28493 -13.77848 -13.40835 -12.92311 -12.74693 -12.42093 -12.33028 -11.95714 -11.76521 -11.72641 -11.47729 -11.37077 -10.95626 -10.69785 -10.64138 -10.15020 -10.06745 -9.91569 -9.49519 -9.35653 -8.28649 -8.18571 -8.06116 -7.58241 -6.99271 -4.63520 1.23527 1.53572 2.59853 2.89761 2.94805 2.96686 2.98382 3.09128 3.67225 3.75100 4.17601 4.43997 4.50128 4.73258 4.78728 4.97590 5.17196 5.36227 5.43530 5.44612 5.50605 5.56240 5.68053 5.83069 5.88741 5.91949 6.02018 6.26757 6.35126 6.49295 6.60297 6.76533 6.90739 6.96115 7.06756 7.46765 7.50638 7.67849 7.74282 8.13513 8.24517 8.51048 8.53660 9.45846 9.91567 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.027073 B = 0.003816 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.008769 B = 7336.595119 C = 8224.231274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.074 3.926 3 Si 0.914 3.086 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.447 4.447 8 H 0.085 0.915 9 C 0.058 3.942 10 C -0.010 4.010 11 N -0.469 5.469 12 C -0.015 4.015 13 C -0.105 4.105 14 C 0.071 3.929 15 C -0.201 4.201 16 C 0.134 3.866 17 N -0.556 5.556 18 C 0.318 3.682 19 O -0.279 6.279 20 C 0.019 3.981 21 C -0.185 4.185 22 C -0.181 4.181 23 C -0.192 4.192 24 C -0.105 4.105 25 H 0.286 0.714 26 H 0.129 0.871 27 H 0.125 0.875 28 H 0.143 0.857 29 H 0.156 0.844 30 H 0.138 0.862 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.141 0.859 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.439 -3.023 -7.796 11.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.145 4.145 3 Si 0.738 3.262 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.187 1.187 7 C -0.477 4.477 8 H 0.104 0.896 9 C 0.054 3.946 10 C -0.171 4.171 11 N -0.176 5.176 12 C -0.174 4.174 13 C -0.107 4.107 14 C 0.063 3.937 15 C -0.221 4.221 16 C -0.020 4.020 17 N -0.280 5.280 18 C 0.141 3.859 19 O -0.186 6.186 20 C -0.038 4.038 21 C -0.222 4.222 22 C -0.218 4.218 23 C -0.213 4.213 24 C -0.130 4.130 25 H 0.097 0.903 26 H 0.147 0.853 27 H 0.142 0.858 28 H 0.160 0.840 29 H 0.173 0.827 30 H 0.156 0.844 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.122 0.878 34 H 0.119 0.881 35 H 0.158 0.842 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.008 -3.947 -7.944 12.642 hybrid contribution 0.528 1.726 0.227 1.819 sum -8.480 -2.221 -7.717 11.679 Atomic orbital electron populations 1.69764 1.07702 1.29996 1.33854 1.25990 0.94835 1.01726 0.91917 0.86253 0.80136 0.79567 0.80255 1.18596 1.20121 1.18739 1.19552 0.98270 0.90724 1.39120 0.89649 1.18477 0.92130 0.93854 0.90152 1.22628 1.02361 0.87987 1.04096 1.66977 1.07812 1.31943 1.10875 1.21816 0.96699 0.95396 1.03453 1.19325 0.95128 0.95915 1.00365 1.19112 0.92233 0.91474 0.90878 1.22187 0.98735 0.99710 1.01508 1.22178 0.92152 0.94009 0.93653 1.67029 1.34627 0.98430 1.27955 1.19498 0.89968 0.84665 0.91814 1.86163 1.41081 1.26780 1.64596 1.22882 0.86843 0.97451 0.96620 1.23419 0.95724 1.03207 0.99895 1.23386 1.02864 1.00548 0.94982 1.21042 0.96853 0.99940 1.03454 1.21876 0.97411 0.95990 0.97749 0.90287 0.85313 0.85805 0.83966 0.82708 0.84438 0.88092 0.87910 0.87839 0.88071 0.84155 0.84691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.54 10.92 55.55 0.61 -17.94 16 2 C 0.07 1.71 5.18 -17.34 -0.09 1.62 16 3 Si 0.91 17.14 29.59 -169.99 -5.03 12.11 16 4 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 5 H -0.28 -5.06 7.11 56.52 0.40 -4.66 16 6 H -0.26 -4.91 7.11 56.52 0.40 -4.50 16 7 C -0.45 -10.90 9.08 -37.73 -0.34 -11.24 16 8 H 0.09 1.97 7.90 -52.48 -0.41 1.56 16 9 C 0.06 1.46 5.59 -106.71 -0.60 0.86 16 10 C -0.01 -0.23 10.96 -16.73 -0.18 -0.42 16 11 N -0.47 -11.31 10.32 -12.28 -0.13 -11.44 16 12 C -0.02 -0.35 10.62 -16.98 -0.18 -0.53 16 13 C -0.10 -2.36 5.88 -104.83 -0.62 -2.97 16 14 C 0.07 1.40 5.91 -104.61 -0.62 0.78 16 15 C -0.20 -3.56 9.50 -39.11 -0.37 -3.94 16 16 C 0.13 2.09 11.16 -17.62 -0.20 1.89 16 17 N -0.56 -9.22 8.57 -13.41 -0.11 -9.33 16 18 C 0.32 5.52 7.48 -17.18 -0.13 5.39 16 19 O -0.28 -4.46 10.37 -18.75 -0.19 -4.65 16 20 C 0.02 0.25 6.36 -26.73 -0.17 0.08 16 21 C -0.19 -1.88 10.48 -26.69 -0.28 -2.16 16 22 C -0.18 -1.80 10.48 -26.69 -0.28 -2.08 16 23 C -0.19 -3.49 9.44 -38.94 -0.37 -3.86 16 24 C -0.10 -2.52 8.19 -38.23 -0.31 -2.84 16 25 H 0.29 6.10 8.30 -40.82 -0.34 5.77 16 26 H 0.13 2.87 8.06 -52.48 -0.42 2.44 16 27 H 0.12 2.49 6.29 -52.48 -0.33 2.16 16 28 H 0.14 2.51 6.39 -52.48 -0.34 2.17 16 29 H 0.16 1.86 8.06 -52.49 -0.42 1.44 16 30 H 0.14 1.79 6.86 -51.93 -0.36 1.43 16 31 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.14 2.40 6.35 -52.48 -0.33 2.06 16 36 H 0.14 3.23 4.53 -52.49 -0.24 2.99 16 LS Contribution 312.71 15.07 4.71 4.71 Total: -1.00 -27.00 312.71 -8.56 -35.56 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -3.68 Total: 10.39 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: -4.73 Total: -19.41 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: 0.36 Total: -38.71 kcal Atomic # 8 Polarization: -4.46 SS G_CDS: -0.19 Total: -4.65 kcal Atomic # 14 Polarization: 17.14 SS G_CDS: -5.03 Total: 12.11 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -27.00 -8.56 -35.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242724249.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.039 kcal (2) G-P(sol) polarization free energy of solvation -26.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds