Wall clock time and date at job start Tue Mar 31 2020 05:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30732 * 1 3 3 Si 1.86797 * 120.00158 * 2 1 4 4 H 1.48503 * 109.47348 * 274.98840 * 3 2 1 5 5 H 1.48500 * 109.46825 * 34.98543 * 3 2 1 6 6 H 1.48500 * 109.47186 * 154.98198 * 3 2 1 7 7 C 1.40050 * 119.99812 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99810 * 186.68883 * 7 2 1 9 9 C 1.41311 * 120.00060 * 6.69095 * 7 2 1 10 10 C 1.40852 * 120.14532 * 174.90554 * 9 7 2 11 11 N 1.31872 * 119.97410 * 180.02562 * 10 9 7 12 12 C 1.32182 * 120.29423 * 359.97438 * 11 10 9 13 13 C 1.40068 * 120.29233 * 0.02562 * 12 11 10 14 14 C 1.48165 * 119.99063 * 179.97438 * 13 12 11 15 15 C 1.39397 * 120.16342 * 41.55997 * 14 13 12 16 16 C 1.37951 * 119.93144 * 180.02562 * 15 14 13 17 17 C 1.38439 * 120.25187 * 0.02562 * 16 15 14 18 18 C 1.38149 * 120.32268 * 359.70903 * 17 16 15 19 19 C 1.38612 * 120.07005 * 0.54865 * 18 17 16 20 20 O 1.35794 * 120.13135 * 179.74995 * 19 18 17 21 21 C 1.42909 * 116.99585 * 6.28090 * 20 19 18 22 22 C 1.52998 * 117.49688 * 225.38567 * 21 20 19 23 23 C 1.53004 * 60.00207 * 252.51198 * 22 21 20 24 24 N 1.32582 * 120.01517 * 0.25090 * 13 12 11 25 25 H 0.96998 * 119.99914 * 0.02562 * 1 2 3 26 26 H 1.08001 * 120.01143 * 0.02562 * 10 9 7 27 27 H 1.08000 * 119.85005 * 180.02562 * 12 11 10 28 28 H 1.08000 * 120.03631 * 0.02562 * 15 14 13 29 29 H 1.08001 * 119.87476 * 180.02562 * 16 15 14 30 30 H 1.07997 * 119.83814 * 179.97438 * 17 16 15 31 31 H 1.08002 * 119.96444 * 180.30066 * 18 17 16 32 32 H 1.08997 * 115.54875 * 11.09892 * 21 20 19 33 33 H 1.08996 * 117.50107 * 0.02562 * 22 21 20 34 34 H 1.09001 * 117.49700 * 145.02367 * 22 21 20 35 35 H 1.08993 * 117.49887 * 252.51488 * 23 22 21 36 36 H 1.09000 * 117.49983 * 107.48662 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 2.3835 2.1073 -1.3948 5 1 1.4954 2.6199 0.8028 6 1 3.5876 1.4120 0.5921 7 6 2.0075 -1.2129 -0.0005 8 1 3.0820 -1.2161 0.1084 9 6 1.3082 -2.4324 -0.1437 10 6 2.0161 -3.6453 -0.2523 11 7 1.3600 -4.7813 -0.3863 12 6 0.0386 -4.7884 -0.4187 13 6 -0.6772 -3.5892 -0.3117 14 6 -2.1583 -3.6048 -0.3494 15 6 -2.8660 -4.5917 0.3349 16 6 -4.2449 -4.6021 0.2961 17 6 -4.9297 -3.6358 -0.4208 18 6 -4.2390 -2.6497 -1.0984 19 6 -2.8533 -2.6298 -1.0728 20 8 -2.1730 -1.6640 -1.7426 21 6 -2.9463 -0.6204 -2.3385 22 6 -2.5989 -0.2142 -3.7720 23 6 -2.2453 0.7128 -2.6073 24 7 -0.0296 -2.4396 -0.1821 25 1 -0.4850 0.8400 -0.0004 26 1 3.0958 -3.6448 -0.2259 27 1 -0.4914 -5.7230 -0.5283 28 1 -2.3353 -5.3475 0.8949 29 1 -4.7923 -5.3668 0.8270 30 1 -6.0093 -3.6505 -0.4470 31 1 -4.7793 -1.8959 -1.6519 32 1 -3.9957 -0.5872 -2.0458 33 1 -1.7808 -0.7432 -4.2608 34 1 -3.4199 0.0862 -4.4230 35 1 -2.8338 1.6230 -2.4920 36 1 -1.1944 0.7939 -2.3296 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242792299.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:06 Heat of formation + Delta-G solvation = 67.777546 kcal Electronic energy + Delta-G solvation = -21746.634546 eV Core-core repulsion = 18583.382217 eV Total energy + Delta-G solvation = -3163.252330 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.79742 -38.63713 -37.34452 -34.76071 -33.99320 -32.51577 -31.17158 -29.58918 -28.60073 -25.94398 -23.59905 -23.23978 -22.15665 -21.89026 -20.81646 -20.28443 -17.99606 -17.49156 -16.10399 -15.43265 -15.31313 -15.12649 -14.90381 -14.65462 -14.13605 -13.82939 -13.61530 -13.43114 -12.77436 -12.72044 -11.92930 -11.73662 -11.53162 -11.48750 -11.39305 -11.23799 -11.16817 -10.72089 -10.63102 -10.27331 -10.09074 -9.78661 -9.64296 -9.44921 -9.20490 -8.47380 -7.87101 -7.41133 -7.18809 -6.42487 -4.62289 1.55577 1.88827 2.63942 3.01189 3.03458 3.06042 3.23203 3.60968 3.86840 4.02504 4.31033 4.70178 4.89471 5.11923 5.18897 5.30718 5.32664 5.35739 5.53523 5.70384 5.79769 5.83492 5.92642 5.99348 6.11342 6.19776 6.33304 6.40800 6.46190 6.54020 6.68803 6.81796 6.91418 6.98557 7.11000 7.19795 7.28979 7.69072 8.07315 8.09426 8.46560 8.70760 9.29327 9.89268 10.18059 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.013506 B = 0.008091 C = 0.005684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.703902 B = 3459.994702 C = 4925.144572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.688 5.688 2 C 0.066 3.934 3 Si 0.903 3.097 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.413 4.413 8 H 0.088 0.912 9 C 0.206 3.794 10 C -0.069 4.069 11 N -0.431 5.431 12 C -0.110 4.110 13 C 0.143 3.857 14 C -0.047 4.047 15 C -0.068 4.068 16 C -0.169 4.169 17 C -0.086 4.086 18 C -0.224 4.224 19 C 0.169 3.831 20 O -0.228 6.228 21 C 0.009 3.991 22 C -0.193 4.193 23 C -0.165 4.165 24 N -0.420 5.420 25 H 0.273 0.727 26 H 0.131 0.869 27 H 0.125 0.875 28 H 0.127 0.873 29 H 0.118 0.882 30 H 0.116 0.884 31 H 0.125 0.875 32 H 0.115 0.885 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.263 1.380 -2.900 9.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.308 5.308 2 C -0.162 4.162 3 Si 0.727 3.273 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.444 4.444 8 H 0.106 0.894 9 C 0.079 3.921 10 C -0.239 4.239 11 N -0.142 5.142 12 C -0.268 4.268 13 C -0.006 4.006 14 C -0.049 4.049 15 C -0.087 4.087 16 C -0.188 4.188 17 C -0.105 4.105 18 C -0.243 4.243 19 C 0.121 3.879 20 O -0.139 6.139 21 C -0.048 4.048 22 C -0.230 4.230 23 C -0.202 4.202 24 N -0.137 5.137 25 H 0.085 0.915 26 H 0.148 0.852 27 H 0.142 0.858 28 H 0.145 0.855 29 H 0.137 0.863 30 H 0.135 0.865 31 H 0.142 0.858 32 H 0.132 0.868 33 H 0.117 0.883 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -9.216 1.571 -2.932 9.798 hybrid contribution 0.160 0.843 -0.048 0.860 sum -9.057 2.414 -2.981 9.836 Atomic orbital electron populations 1.70177 1.06796 1.27792 1.26055 1.26095 0.95007 1.00980 0.94088 0.86366 0.80767 0.80997 0.79145 1.19403 1.20084 1.18386 1.19579 0.94877 0.89225 1.40754 0.89379 1.19406 0.89002 0.93311 0.90357 1.23169 0.99154 0.89508 1.12048 1.67632 1.08808 1.30162 1.07601 1.22458 0.90629 0.96732 1.17022 1.20462 0.91977 0.91749 0.96386 1.18047 0.91941 0.95473 0.99422 1.21008 0.93688 0.96810 0.97203 1.20818 0.93971 1.00742 1.03228 1.20812 0.99067 0.94203 0.96396 1.21098 0.93081 1.02902 1.07211 1.19033 0.89722 0.88220 0.90941 1.86434 1.31908 1.31723 1.63798 1.22864 0.95279 0.90385 0.96309 1.23411 1.03971 1.04075 0.91523 1.23258 1.03417 0.92659 1.00833 1.69734 1.07486 1.22679 1.13818 0.91544 0.85153 0.85792 0.85473 0.86349 0.86549 0.85775 0.86780 0.88265 0.88574 0.88488 0.87133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -17.14 11.45 55.55 0.64 -16.50 16 2 C 0.07 1.59 5.49 -17.34 -0.10 1.50 16 3 Si 0.90 17.81 29.56 -169.99 -5.03 12.79 16 4 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 5 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 6 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 7 C -0.41 -10.66 9.15 -37.74 -0.35 -11.00 16 8 H 0.09 2.11 7.86 -52.49 -0.41 1.70 16 9 C 0.21 5.61 6.54 -84.84 -0.56 5.05 16 10 C -0.07 -1.78 10.98 -16.55 -0.18 -1.96 16 11 N -0.43 -11.02 10.47 -12.04 -0.13 -11.15 16 12 C -0.11 -2.67 10.52 -16.71 -0.18 -2.84 16 13 C 0.14 3.56 6.21 -82.78 -0.51 3.05 16 14 C -0.05 -1.00 5.69 -104.77 -0.60 -1.60 16 15 C -0.07 -1.20 9.32 -39.26 -0.37 -1.57 16 16 C -0.17 -2.52 10.03 -39.61 -0.40 -2.91 16 17 C -0.09 -1.24 10.03 -39.54 -0.40 -1.64 16 18 C -0.22 -3.65 9.10 -39.48 -0.36 -4.01 16 19 C 0.17 3.41 6.65 -38.82 -0.26 3.16 16 20 O -0.23 -4.89 9.09 -19.09 -0.17 -5.06 16 21 C 0.01 0.15 6.10 -26.73 -0.16 -0.01 16 22 C -0.19 -2.78 10.48 -26.73 -0.28 -3.06 16 23 C -0.16 -2.57 10.48 -26.73 -0.28 -2.85 16 24 N -0.42 -11.42 7.01 -7.52 -0.05 -11.48 16 25 H 0.27 6.21 8.29 -40.82 -0.34 5.87 16 26 H 0.13 3.05 8.06 -52.49 -0.42 2.63 16 27 H 0.12 2.66 7.76 -52.49 -0.41 2.26 16 28 H 0.13 2.08 7.77 -52.49 -0.41 1.67 16 29 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 30 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 31 H 0.12 1.70 5.69 -52.49 -0.30 1.40 16 32 H 0.11 1.60 5.56 -51.93 -0.29 1.31 16 33 H 0.10 1.58 8.14 -51.93 -0.42 1.15 16 34 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.11 2.05 8.08 -51.93 -0.42 1.63 16 LS Contribution 315.26 15.07 4.75 4.75 Total: -1.00 -30.03 315.26 -8.86 -38.89 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -3.90 Total: 8.47 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: -4.96 Total: -20.71 kcal Atomic # 7 Polarization: -39.58 SS G_CDS: 0.46 Total: -39.12 kcal Atomic # 8 Polarization: -4.89 SS G_CDS: -0.17 Total: -5.06 kcal Atomic # 14 Polarization: 17.81 SS G_CDS: -5.03 Total: 12.79 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.03 -8.86 -38.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242792299.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.665 kcal (2) G-P(sol) polarization free energy of solvation -30.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds