Wall clock time and date at job start Tue Mar 31 2020 05:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30687 * 1 3 3 Si 1.86800 * 119.99890 * 2 1 4 4 H 1.48505 * 109.46943 * 240.00010 * 3 2 1 5 5 H 1.48500 * 109.47294 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47263 * 120.00488 * 3 2 1 7 7 C 1.40174 * 119.99939 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99729 * 179.97438 * 7 2 1 9 9 C 1.40793 * 120.00249 * 359.97438 * 7 2 1 10 10 N 1.33980 * 120.28742 * 359.00272 * 9 7 2 11 11 C 1.31603 * 119.89813 * 180.28106 * 10 9 7 12 12 C 1.39189 * 120.50635 * 359.70089 * 11 10 9 13 13 N 1.32009 * 120.58731 * 359.97438 * 12 11 10 14 14 C 1.32856 * 120.07825 * 0.02562 * 13 12 11 15 15 C 1.47801 * 120.24729 * 180.02562 * 14 13 12 16 16 C 1.39733 * 120.12802 * 45.21199 * 15 14 13 17 17 C 1.37920 * 119.95545 * 179.74678 * 16 15 14 18 18 C 1.38331 * 120.21316 * 0.55478 * 17 16 15 19 19 C 1.38878 * 120.25424 * 359.69595 * 18 17 16 20 20 O 1.35897 * 119.97857 * 179.97438 * 19 18 17 21 21 C 1.42899 * 116.99974 * 185.50502 * 20 19 18 22 22 C 1.53005 * 117.50029 * 225.81268 * 21 20 19 23 23 C 1.52993 * 117.50240 * 157.14873 * 21 20 19 24 24 C 1.38437 * 120.03857 * 0.02562 * 19 18 17 25 25 H 0.96996 * 119.99976 * 359.97438 * 1 2 3 26 26 H 1.08004 * 119.74377 * 179.67870 * 11 10 9 27 27 H 1.08001 * 119.71113 * 179.97438 * 12 11 10 28 28 H 1.08003 * 120.02010 * 359.97438 * 16 15 14 29 29 H 1.08004 * 119.88999 * 180.25225 * 17 16 15 30 30 H 1.08001 * 119.87159 * 179.72675 * 18 17 16 31 31 H 1.09003 * 115.54721 * 11.47481 * 21 20 19 32 32 H 1.08996 * 117.50042 * 359.97438 * 22 21 20 33 33 H 1.09000 * 117.49985 * 145.02101 * 22 21 20 34 34 H 1.09004 * 117.50226 * 214.98131 * 23 21 20 35 35 H 1.09001 * 117.49930 * 0.02562 * 23 21 20 36 36 H 1.07999 * 120.10853 * 180.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 3.0946 1.6964 -1.2126 5 1 1.2759 2.7465 -0.0006 6 1 3.0947 1.6964 1.2124 7 6 2.0077 -1.2139 -0.0005 8 1 3.0878 -1.2139 -0.0010 9 6 1.3038 -2.4333 -0.0005 10 7 -0.0358 -2.4401 0.0201 11 6 -0.6859 -3.5843 0.0255 12 6 0.0074 -4.7911 0.0037 13 7 1.3271 -4.8071 -0.0233 14 6 2.0069 -3.6657 -0.0293 15 6 3.4845 -3.6793 -0.0601 16 6 4.1600 -4.5311 -0.9380 17 6 5.5388 -4.5371 -0.9674 18 6 6.2568 -3.7104 -0.1220 19 6 5.5945 -2.8641 0.7577 20 8 6.3054 -2.0547 1.5862 21 6 5.5655 -1.2999 2.5478 22 6 5.9185 0.1803 2.7075 23 6 6.3104 -0.8223 3.7959 24 6 4.2107 -2.8454 0.7920 25 1 -0.4850 0.8400 0.0004 26 1 -1.7658 -3.5870 0.0475 27 1 -0.5391 -5.7226 0.0089 28 1 3.6026 -5.1816 -1.5957 29 1 6.0598 -5.1929 -1.6493 30 1 7.3364 -3.7228 -0.1466 31 1 4.5193 -1.5831 2.6636 32 1 6.7154 0.5782 2.0793 33 1 5.1047 0.8708 2.9288 34 1 5.7542 -0.7908 4.7329 35 1 7.3650 -1.0834 3.8833 36 1 3.6946 -2.1874 1.4754 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242803526.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:12 Heat of formation + Delta-G solvation = 64.178086 kcal Electronic energy + Delta-G solvation = -21449.615873 eV Core-core repulsion = 18286.207459 eV Total energy + Delta-G solvation = -3163.408414 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.85555 -38.94393 -37.30425 -34.97859 -34.25393 -32.43719 -31.46913 -29.31812 -28.70936 -26.26791 -23.71259 -23.13570 -22.38200 -22.00778 -20.76299 -20.46091 -17.97709 -17.70757 -16.21748 -15.81188 -15.26120 -15.24099 -14.91894 -14.60397 -14.32770 -14.02447 -13.71154 -13.27285 -12.94775 -12.79459 -12.14928 -11.86950 -11.66956 -11.60763 -11.51262 -11.41113 -10.93448 -10.91450 -10.62976 -10.43095 -10.04371 -9.93279 -9.79577 -9.64243 -9.24904 -8.46351 -7.78553 -7.59279 -7.40795 -6.66315 -4.82327 1.71795 2.01987 2.50210 2.90848 2.92369 2.95147 3.11408 3.33040 3.72117 3.87632 4.39559 4.52999 4.85133 4.98395 5.17967 5.22022 5.43589 5.52331 5.63316 5.66350 5.69777 5.89175 5.91563 5.95888 6.08004 6.12621 6.19901 6.20835 6.39217 6.51745 6.70662 6.84038 6.88324 6.96559 7.09112 7.32004 7.39002 7.56039 7.88987 7.92060 8.24790 8.51618 9.11991 9.70284 9.95059 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.011593 B = 0.008538 C = 0.005657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.611765 B = 3278.551854 C = 4948.227055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.700 5.700 2 C 0.065 3.935 3 Si 0.905 3.095 4 H -0.259 1.259 5 H -0.274 1.274 6 H -0.257 1.257 7 C -0.404 4.404 8 H 0.103 0.897 9 C 0.220 3.780 10 N -0.452 5.452 11 C 0.089 3.911 12 C -0.119 4.119 13 N -0.408 5.408 14 C -0.038 4.038 15 C 0.068 3.932 16 C -0.143 4.143 17 C -0.088 4.088 18 C -0.172 4.172 19 C 0.120 3.880 20 O -0.289 6.289 21 C 0.007 3.993 22 C -0.187 4.187 23 C -0.174 4.174 24 C -0.192 4.192 25 H 0.280 0.720 26 H 0.131 0.869 27 H 0.129 0.871 28 H 0.119 0.881 29 H 0.121 0.879 30 H 0.119 0.881 31 H 0.129 0.871 32 H 0.101 0.899 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.100 0.900 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.713 0.699 2.996 8.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.320 5.320 2 C -0.163 4.163 3 Si 0.728 3.272 4 H -0.183 1.183 5 H -0.198 1.198 6 H -0.181 1.181 7 C -0.433 4.433 8 H 0.120 0.880 9 C 0.095 3.905 10 N -0.169 5.169 11 C -0.082 4.082 12 C -0.281 4.281 13 N -0.120 5.120 14 C -0.184 4.184 15 C 0.067 3.933 16 C -0.162 4.162 17 C -0.106 4.106 18 C -0.191 4.191 19 C 0.076 3.924 20 O -0.203 6.203 21 C -0.049 4.049 22 C -0.224 4.224 23 C -0.211 4.211 24 C -0.211 4.211 25 H 0.091 0.909 26 H 0.149 0.851 27 H 0.146 0.854 28 H 0.137 0.863 29 H 0.139 0.861 30 H 0.137 0.863 31 H 0.147 0.853 32 H 0.119 0.881 33 H 0.122 0.878 34 H 0.122 0.878 35 H 0.119 0.881 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 7.690 0.918 2.997 8.305 hybrid contribution -0.114 0.712 -0.037 0.722 sum 7.576 1.630 2.960 8.296 Atomic orbital electron populations 1.70060 1.07474 1.28865 1.25562 1.26238 0.94981 1.01602 0.93511 0.86375 0.80303 0.79771 0.80738 1.18339 1.19832 1.18137 1.19998 0.95503 0.88992 1.38854 0.87962 1.19214 0.88958 0.92300 0.89991 1.69573 1.07388 1.24893 1.14999 1.23565 1.00082 0.90368 0.94194 1.22569 0.90623 0.97823 1.17041 1.67685 1.08560 1.29731 1.06028 1.20107 0.91876 0.90274 1.16152 1.18110 0.90849 0.92267 0.92121 1.21158 0.93606 1.00760 1.00699 1.20719 0.93837 0.98065 0.98006 1.20216 0.99449 0.99754 0.99645 1.18782 0.90254 0.91609 0.91740 1.85926 1.34733 1.54777 1.44833 1.23025 0.96773 0.93052 0.92079 1.23454 1.04250 0.92635 1.02061 1.23331 1.01841 1.02821 0.93154 1.21457 0.92017 1.04104 1.03533 0.90853 0.85140 0.85351 0.86318 0.86104 0.86256 0.85330 0.88056 0.87794 0.87791 0.88138 0.84272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.40 11.48 55.56 0.64 -16.77 16 2 C 0.06 1.54 5.50 -17.31 -0.10 1.44 16 3 Si 0.91 17.38 29.56 -169.99 -5.03 12.36 16 4 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 5 H -0.27 -5.11 7.11 56.52 0.40 -4.70 16 6 H -0.26 -4.69 7.11 56.52 0.40 -4.28 16 7 C -0.40 -10.10 7.83 -37.89 -0.30 -10.40 16 8 H 0.10 2.43 4.86 -52.48 -0.25 2.18 16 9 C 0.22 5.79 6.54 -84.56 -0.55 5.24 16 10 N -0.45 -11.98 8.03 -10.73 -0.09 -12.06 16 11 C 0.09 2.08 11.22 -17.30 -0.19 1.89 16 12 C -0.12 -2.70 11.22 -17.12 -0.19 -2.89 16 13 N -0.41 -9.99 10.32 -8.97 -0.09 -10.08 16 14 C -0.04 -0.94 6.40 -82.11 -0.53 -1.47 16 15 C 0.07 1.51 5.30 -104.92 -0.56 0.96 16 16 C -0.14 -2.82 9.68 -39.14 -0.38 -3.20 16 17 C -0.09 -1.47 10.03 -39.66 -0.40 -1.87 16 18 C -0.17 -2.91 9.98 -39.31 -0.39 -3.30 16 19 C 0.12 2.24 6.67 -39.27 -0.26 1.98 16 20 O -0.29 -5.03 10.39 -19.42 -0.20 -5.23 16 21 C 0.01 0.11 6.09 -26.73 -0.16 -0.05 16 22 C -0.19 -2.48 10.48 -26.69 -0.28 -2.76 16 23 C -0.17 -2.11 10.48 -26.69 -0.28 -2.39 16 24 C -0.19 -3.94 6.56 -39.00 -0.26 -4.20 16 25 H 0.28 6.28 8.29 -40.82 -0.34 5.94 16 26 H 0.13 2.58 8.06 -52.48 -0.42 2.16 16 27 H 0.13 2.48 8.06 -52.49 -0.42 2.06 16 28 H 0.12 2.30 8.06 -52.48 -0.42 1.88 16 29 H 0.12 1.61 8.06 -52.48 -0.42 1.18 16 30 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 31 H 0.13 2.08 5.53 -51.93 -0.29 1.79 16 32 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 35 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.14 2.90 4.33 -52.49 -0.23 2.67 16 LS Contribution 310.98 15.07 4.69 4.69 Total: -1.00 -28.80 310.98 -8.61 -37.41 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -3.71 Total: 10.69 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: -4.82 Total: -21.00 kcal Atomic # 7 Polarization: -39.37 SS G_CDS: 0.46 Total: -38.91 kcal Atomic # 8 Polarization: -5.03 SS G_CDS: -0.20 Total: -5.23 kcal Atomic # 14 Polarization: 17.38 SS G_CDS: -5.03 Total: 12.36 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.80 -8.61 -37.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242803526.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.586 kcal (2) G-P(sol) polarization free energy of solvation -28.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds