Wall clock time and date at job start Tue Mar 31 2020 05:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30687 * 1 3 3 Si 1.86800 * 119.99890 * 2 1 4 4 H 1.48505 * 109.46943 * 240.00010 * 3 2 1 5 5 H 1.48500 * 109.47294 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47263 * 120.00488 * 3 2 1 7 7 C 1.40174 * 119.99939 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99729 * 179.97438 * 7 2 1 9 9 C 1.40793 * 120.00249 * 359.97438 * 7 2 1 10 10 N 1.33980 * 120.28742 * 359.00272 * 9 7 2 11 11 C 1.31603 * 119.89813 * 180.28106 * 10 9 7 12 12 C 1.39189 * 120.50635 * 359.70089 * 11 10 9 13 13 N 1.32009 * 120.58731 * 359.97438 * 12 11 10 14 14 C 1.32856 * 120.07825 * 0.02562 * 13 12 11 15 15 C 1.47801 * 120.24729 * 180.02562 * 14 13 12 16 16 C 1.39733 * 120.12802 * 45.21199 * 15 14 13 17 17 C 1.37920 * 119.95545 * 179.74678 * 16 15 14 18 18 C 1.38331 * 120.21316 * 0.55478 * 17 16 15 19 19 C 1.38878 * 120.25424 * 359.69595 * 18 17 16 20 20 O 1.35897 * 119.97857 * 179.97438 * 19 18 17 21 21 C 1.42899 * 116.99974 * 185.50502 * 20 19 18 22 22 C 1.53005 * 117.50029 * 225.81268 * 21 20 19 23 23 C 1.52993 * 117.50240 * 157.14873 * 21 20 19 24 24 C 1.38437 * 120.03857 * 0.02562 * 19 18 17 25 25 H 0.96996 * 119.99976 * 359.97438 * 1 2 3 26 26 H 1.08004 * 119.74377 * 179.67870 * 11 10 9 27 27 H 1.08001 * 119.71113 * 179.97438 * 12 11 10 28 28 H 1.08003 * 120.02010 * 359.97438 * 16 15 14 29 29 H 1.08004 * 119.88999 * 180.25225 * 17 16 15 30 30 H 1.08001 * 119.87159 * 179.72675 * 18 17 16 31 31 H 1.09003 * 115.54721 * 11.47481 * 21 20 19 32 32 H 1.08996 * 117.50042 * 359.97438 * 22 21 20 33 33 H 1.09000 * 117.49985 * 145.02101 * 22 21 20 34 34 H 1.09004 * 117.50226 * 214.98131 * 23 21 20 35 35 H 1.09001 * 117.49930 * 0.02562 * 23 21 20 36 36 H 1.07999 * 120.10853 * 180.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 3.0946 1.6964 -1.2126 5 1 1.2759 2.7465 -0.0006 6 1 3.0947 1.6964 1.2124 7 6 2.0077 -1.2139 -0.0005 8 1 3.0878 -1.2139 -0.0010 9 6 1.3038 -2.4333 -0.0005 10 7 -0.0358 -2.4401 0.0201 11 6 -0.6859 -3.5843 0.0255 12 6 0.0074 -4.7911 0.0037 13 7 1.3271 -4.8071 -0.0233 14 6 2.0069 -3.6657 -0.0293 15 6 3.4845 -3.6793 -0.0601 16 6 4.1600 -4.5311 -0.9380 17 6 5.5388 -4.5371 -0.9674 18 6 6.2568 -3.7104 -0.1220 19 6 5.5945 -2.8641 0.7577 20 8 6.3054 -2.0547 1.5862 21 6 5.5655 -1.2999 2.5478 22 6 5.9185 0.1803 2.7075 23 6 6.3104 -0.8223 3.7959 24 6 4.2107 -2.8454 0.7920 25 1 -0.4850 0.8400 0.0004 26 1 -1.7658 -3.5870 0.0475 27 1 -0.5391 -5.7226 0.0089 28 1 3.6026 -5.1816 -1.5957 29 1 6.0598 -5.1929 -1.6493 30 1 7.3364 -3.7228 -0.1466 31 1 4.5193 -1.5831 2.6636 32 1 6.7154 0.5782 2.0793 33 1 5.1047 0.8708 2.9288 34 1 5.7542 -0.7908 4.7329 35 1 7.3650 -1.0834 3.8833 36 1 3.6946 -2.1874 1.4754 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242803526.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:12 Heat of formation + Delta-G solvation = 48.203274 kcal Electronic energy + Delta-G solvation = -21450.308593 eV Core-core repulsion = 18286.207459 eV Total energy + Delta-G solvation = -3164.101134 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.34740 -40.59152 -38.66314 -36.18455 -36.06269 -34.18431 -33.19535 -30.81124 -30.33076 -28.07389 -25.30425 -24.61278 -23.77539 -23.37313 -22.33756 -21.76623 -19.65066 -19.26311 -17.96584 -17.20056 -16.91064 -16.71728 -16.42134 -16.04126 -15.82333 -15.43629 -15.11894 -14.68884 -14.60206 -14.42733 -13.64567 -13.33798 -13.31573 -13.08860 -13.02035 -12.54119 -12.45960 -12.39736 -12.10560 -11.82660 -11.68015 -11.52912 -11.36128 -11.12070 -10.92629 -10.11577 -9.48066 -9.30705 -8.95247 -8.45641 -6.68693 0.11813 0.56566 0.76887 1.18469 1.33636 1.46348 1.48871 2.09763 2.12077 2.69059 2.77903 2.98538 3.62536 3.70585 3.75995 3.97431 4.03912 4.12387 4.13528 4.24818 4.34727 4.42511 4.47648 4.64969 4.69147 4.74663 4.84586 4.90947 4.95313 5.06283 5.09195 5.16966 5.22093 5.46737 5.57166 5.76417 5.83381 5.92167 6.08643 6.41393 6.51339 6.67048 7.27401 7.84801 8.20750 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.011593 B = 0.008538 C = 0.005657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.611765 B = 3278.551854 C = 4948.227055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.736 5.736 2 C 0.025 3.975 3 Si 0.972 3.028 4 H -0.261 1.261 5 H -0.263 1.263 6 H -0.241 1.241 7 C -0.423 4.423 8 H 0.106 0.894 9 C 0.188 3.812 10 N -0.486 5.486 11 C 0.077 3.923 12 C -0.122 4.122 13 N -0.425 5.425 14 C -0.050 4.050 15 C 0.035 3.965 16 C -0.156 4.156 17 C -0.073 4.073 18 C -0.164 4.164 19 C 0.117 3.883 20 O -0.290 6.290 21 C -0.031 4.031 22 C -0.183 4.183 23 C -0.147 4.147 24 C -0.202 4.202 25 H 0.287 0.713 26 H 0.162 0.838 27 H 0.163 0.837 28 H 0.114 0.886 29 H 0.164 0.836 30 H 0.153 0.847 31 H 0.111 0.889 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.123 0.877 35 H 0.114 0.886 36 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.020 1.169 3.270 10.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.356 5.356 2 C -0.200 4.200 3 Si 0.791 3.209 4 H -0.185 1.185 5 H -0.187 1.187 6 H -0.164 1.164 7 C -0.453 4.453 8 H 0.124 0.876 9 C 0.064 3.936 10 N -0.203 5.203 11 C -0.093 4.093 12 C -0.283 4.283 13 N -0.138 5.138 14 C -0.196 4.196 15 C 0.033 3.967 16 C -0.176 4.176 17 C -0.091 4.091 18 C -0.182 4.182 19 C 0.073 3.927 20 O -0.204 6.204 21 C -0.087 4.087 22 C -0.220 4.220 23 C -0.184 4.184 24 C -0.221 4.221 25 H 0.098 0.902 26 H 0.179 0.821 27 H 0.180 0.820 28 H 0.132 0.868 29 H 0.181 0.819 30 H 0.171 0.829 31 H 0.129 0.871 32 H 0.126 0.874 33 H 0.126 0.874 34 H 0.141 0.859 35 H 0.132 0.868 36 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 9.990 1.366 3.284 10.604 hybrid contribution -0.814 0.471 -0.097 0.946 sum 9.175 1.837 3.187 9.885 Atomic orbital electron populations 1.70132 1.09032 1.30204 1.26278 1.27114 0.95714 1.04688 0.92489 0.85385 0.79169 0.75277 0.81105 1.18482 1.18663 1.16436 1.20255 0.95843 0.89580 1.39588 0.87621 1.19653 0.89435 0.93561 0.90985 1.69523 1.07896 1.26535 1.16375 1.24085 1.01583 0.90001 0.93623 1.23132 0.90447 0.99086 1.15622 1.67761 1.09390 1.29761 1.06850 1.20525 0.93533 0.89983 1.15593 1.18224 0.89789 0.94432 0.94240 1.21249 0.95163 1.00606 1.00558 1.21119 0.92458 0.97702 0.97770 1.20665 1.01116 0.98279 0.98171 1.18981 0.89572 0.91996 0.92190 1.85905 1.34745 1.54755 1.44990 1.23221 0.96696 0.94690 0.94137 1.23545 1.04510 0.91425 1.02517 1.23466 1.02360 1.00000 0.92572 1.21357 0.93067 1.04098 1.03625 0.90161 0.82110 0.81984 0.86756 0.81886 0.82947 0.87109 0.87355 0.87368 0.85933 0.86788 0.85650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -37.62 11.48 21.86 0.25 -37.37 16 2 C 0.02 1.20 5.50 85.33 0.47 1.67 16 3 Si 0.97 35.63 29.56 68.60 2.03 37.65 16 4 H -0.26 -9.53 7.11 99.48 0.71 -8.83 16 5 H -0.26 -9.06 7.11 99.48 0.71 -8.36 16 6 H -0.24 -8.11 7.11 99.48 0.71 -7.40 16 7 C -0.42 -21.99 7.83 23.37 0.18 -21.81 16 8 H 0.11 5.25 4.86 -2.91 -0.01 5.23 16 9 C 0.19 10.35 6.54 40.35 0.26 10.61 16 10 N -0.49 -26.71 8.03 -187.86 -1.51 -28.21 16 11 C 0.08 3.67 11.22 84.96 0.95 4.63 16 12 C -0.12 -5.57 11.22 84.89 0.95 -4.62 16 13 N -0.43 -21.34 10.32 -182.30 -1.88 -23.22 16 14 C -0.05 -2.61 6.40 42.43 0.27 -2.34 16 15 C 0.03 1.59 5.30 -20.06 -0.11 1.48 16 16 C -0.16 -6.14 9.68 22.56 0.22 -5.92 16 17 C -0.07 -2.25 10.03 22.22 0.22 -2.03 16 18 C -0.16 -5.10 9.98 22.45 0.22 -4.87 16 19 C 0.12 4.27 6.67 22.47 0.15 4.42 16 20 O -0.29 -9.71 10.39 -92.39 -0.96 -10.67 16 21 C -0.03 -0.93 6.09 30.59 0.19 -0.75 16 22 C -0.18 -4.49 10.48 30.62 0.32 -4.17 16 23 C -0.15 -3.20 10.48 30.62 0.32 -2.87 16 24 C -0.20 -8.51 6.56 22.65 0.15 -8.36 16 25 H 0.29 13.15 8.29 -92.71 -0.77 12.38 16 26 H 0.16 6.35 8.06 -2.91 -0.02 6.33 16 27 H 0.16 6.10 8.06 -2.91 -0.02 6.08 16 28 H 0.11 4.48 8.06 -2.91 -0.02 4.45 16 29 H 0.16 3.62 8.06 -2.91 -0.02 3.60 16 30 H 0.15 3.75 8.06 -2.91 -0.02 3.73 16 31 H 0.11 3.71 5.53 -2.39 -0.01 3.70 16 32 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 33 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 34 H 0.12 2.19 8.14 -2.38 -0.02 2.17 16 35 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.13 5.53 4.33 -2.91 -0.01 5.52 16 Total: -1.00 -64.80 310.98 3.82 -60.98 By element: Atomic # 1 Polarization: 34.66 SS G_CDS: 1.12 Total: 35.77 kcal Atomic # 6 Polarization: -39.70 SS G_CDS: 4.78 Total: -34.92 kcal Atomic # 7 Polarization: -85.66 SS G_CDS: -3.14 Total: -88.80 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: -0.96 Total: -10.67 kcal Atomic # 14 Polarization: 35.63 SS G_CDS: 2.03 Total: 37.65 kcal Total: -64.80 3.82 -60.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242803526.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.179 kcal (2) G-P(sol) polarization free energy of solvation -64.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds