Wall clock time and date at job start Tue Mar 31 2020 05:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86802 * 119.99854 * 2 1 4 4 H 1.48499 * 109.47257 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46734 * 119.99718 * 3 2 1 6 6 H 1.48498 * 109.46770 * 239.99657 * 3 2 1 7 7 C 1.40046 * 119.99594 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99362 * 174.93326 * 7 2 1 9 9 C 1.41324 * 120.00497 * 354.93411 * 7 2 1 10 10 C 1.40868 * 120.14962 * 184.79179 * 9 7 2 11 11 N 1.31858 * 119.96228 * 179.79779 * 10 9 7 12 12 C 1.32210 * 120.28031 * 0.46423 * 11 10 9 13 13 C 1.39987 * 120.30122 * 359.76669 * 12 11 10 14 14 C 1.48303 * 119.98486 * 179.97438 * 13 12 11 15 15 C 1.39438 * 120.09861 * 180.02562 * 14 13 12 16 16 C 1.38005 * 119.98285 * 179.97438 * 15 14 13 17 17 C 1.38265 * 120.18687 * 359.97257 * 16 15 14 18 18 C 1.38794 * 120.19873 * 0.04999 * 17 16 15 19 19 O 1.35913 * 119.99335 * 179.97438 * 18 17 16 20 20 C 1.42898 * 116.99989 * 5.95968 * 19 18 17 21 21 C 1.52995 * 117.50188 * 214.33927 * 20 19 18 22 22 C 1.53000 * 117.49878 * 145.67920 * 20 19 18 23 23 C 1.38532 * 120.01313 * 359.69576 * 18 17 16 24 24 N 1.32549 * 120.03106 * 0.02562 * 13 12 11 25 25 H 0.96992 * 119.99806 * 0.02562 * 1 2 3 26 26 H 1.07994 * 120.01671 * 0.02562 * 10 9 7 27 27 H 1.07998 * 119.84733 * 179.75252 * 12 11 10 28 28 H 1.08003 * 120.01036 * 359.95436 * 15 14 13 29 29 H 1.08005 * 119.90781 * 180.02562 * 16 15 14 30 30 H 1.08004 * 119.90283 * 180.02562 * 17 16 15 31 31 H 1.08999 * 115.54945 * 0.02562 * 20 19 18 32 32 H 1.09007 * 117.49414 * 0.02562 * 21 20 19 33 33 H 1.09003 * 117.50056 * 145.01847 * 21 20 19 34 34 H 1.09000 * 117.49981 * 214.97865 * 22 20 19 35 35 H 1.08996 * 117.49681 * 0.02562 * 22 20 19 36 36 H 1.07997 * 120.09339 * 180.29985 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 1.2764 2.7465 -0.0006 5 1 3.0950 1.6964 1.2126 6 1 3.0951 1.6963 -1.2125 7 6 2.0075 -1.2129 0.0005 8 1 3.0845 -1.2147 -0.0821 9 6 1.3051 -2.4343 0.1092 10 6 2.0104 -3.6494 0.2116 11 7 1.3512 -4.7866 0.3167 12 6 0.0292 -4.7932 0.3174 13 6 -0.6832 -3.5929 0.2114 14 6 -2.1662 -3.6085 0.2123 15 6 -2.8781 -2.4143 0.1063 16 6 -4.2581 -2.4317 0.1068 17 6 -4.9382 -3.6309 0.2117 18 6 -4.2372 -4.8241 0.3181 19 8 -4.9100 -6.0004 0.4215 20 6 -6.3313 -5.9493 0.2827 21 6 -7.1586 -6.9266 1.1201 22 6 -7.0188 -7.1395 -0.3892 23 6 -2.8519 -4.8167 0.3131 24 7 -0.0329 -2.4424 0.1092 25 1 -0.4849 0.8400 -0.0004 26 1 3.0903 -3.6493 0.2076 27 1 -0.5036 -5.7290 0.3999 28 1 -2.3498 -1.4759 0.0240 29 1 -4.8083 -1.5060 0.0242 30 1 -6.0182 -3.6392 0.2112 31 1 -6.7509 -4.9593 0.1040 32 1 -6.6186 -7.6084 1.7773 33 1 -8.1226 -6.5797 1.4923 34 1 -7.8909 -6.9326 -1.0095 35 1 -6.3870 -7.9618 -0.7250 36 1 -2.3052 -5.7448 0.3909 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242804722.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:14 Heat of formation + Delta-G solvation = 63.438292 kcal Electronic energy + Delta-G solvation = -20546.232318 eV Core-core repulsion = 17382.791824 eV Total energy + Delta-G solvation = -3163.440494 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.00546 -39.02063 -37.50855 -35.22689 -34.11477 -32.51206 -31.34992 -29.66075 -28.69591 -26.10613 -24.14328 -22.75488 -22.64972 -22.33736 -21.34983 -20.07123 -18.22653 -17.53886 -16.16548 -15.86356 -15.52852 -15.09323 -14.94613 -14.85757 -14.73333 -14.00622 -13.65951 -13.22099 -13.16348 -12.98992 -12.30868 -11.87433 -11.76741 -11.63156 -11.50751 -11.37664 -11.07477 -10.82630 -10.76159 -10.44254 -10.33539 -10.11060 -9.87994 -9.58197 -9.43736 -8.55294 -7.89121 -7.51347 -7.41253 -6.59132 -4.75356 1.35773 1.89463 2.62106 2.97418 2.98936 3.00768 3.09936 3.14494 3.59547 3.80031 4.26098 4.49182 4.65783 4.71440 4.84962 5.01954 5.16093 5.34269 5.38073 5.43214 5.63445 5.73430 5.81095 5.84776 5.87148 6.00703 6.00937 6.29005 6.32037 6.48869 6.64028 6.76652 6.90613 6.97651 7.07663 7.24783 7.31423 7.58016 7.70791 7.97353 8.34223 8.58627 9.16575 9.73413 10.06663 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.027025 B = 0.003936 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.830904 B = 7112.710803 C = 8069.243934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.712 5.712 2 C 0.067 3.933 3 Si 0.914 3.086 4 H -0.276 1.276 5 H -0.263 1.263 6 H -0.263 1.263 7 C -0.412 4.412 8 H 0.091 0.909 9 C 0.208 3.792 10 C -0.059 4.059 11 N -0.430 5.430 12 C -0.104 4.104 13 C 0.133 3.867 14 C 0.021 3.979 15 C -0.112 4.112 16 C -0.093 4.093 17 C -0.214 4.214 18 C 0.115 3.885 19 O -0.286 6.286 20 C 0.005 3.995 21 C -0.181 4.181 22 C -0.181 4.181 23 C -0.138 4.138 24 N -0.439 5.439 25 H 0.278 0.722 26 H 0.135 0.865 27 H 0.130 0.870 28 H 0.153 0.847 29 H 0.121 0.879 30 H 0.123 0.877 31 H 0.126 0.874 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.366 -3.700 0.076 12.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.332 5.332 2 C -0.159 4.159 3 Si 0.738 3.262 4 H -0.201 1.201 5 H -0.187 1.187 6 H -0.187 1.187 7 C -0.444 4.444 8 H 0.109 0.891 9 C 0.081 3.919 10 C -0.229 4.229 11 N -0.142 5.142 12 C -0.262 4.262 13 C -0.013 4.013 14 C 0.020 3.980 15 C -0.131 4.131 16 C -0.112 4.112 17 C -0.233 4.233 18 C 0.071 3.929 19 O -0.200 6.200 20 C -0.051 4.051 21 C -0.218 4.218 22 C -0.218 4.218 23 C -0.158 4.158 24 N -0.157 5.157 25 H 0.089 0.911 26 H 0.152 0.848 27 H 0.147 0.853 28 H 0.171 0.829 29 H 0.139 0.861 30 H 0.140 0.860 31 H 0.143 0.857 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -12.468 -3.744 0.107 13.019 hybrid contribution 0.169 0.801 0.006 0.819 sum -12.299 -2.943 0.113 12.647 Atomic orbital electron populations 1.70031 1.07406 1.28507 1.27275 1.26120 0.95004 1.01417 0.93400 0.86263 0.80060 0.79792 0.80095 1.20064 1.18733 1.18748 1.19604 0.94883 0.89102 1.40791 0.89072 1.19364 0.88713 0.93474 0.90380 1.23256 0.99362 0.89292 1.10966 1.67693 1.08711 1.30208 1.07541 1.22557 0.90673 0.97052 1.15937 1.20565 0.92297 0.91784 0.96703 1.18460 0.91432 0.92011 0.96144 1.21632 0.93096 0.99806 0.98518 1.20893 0.94459 0.96811 0.98990 1.21130 0.99508 0.92552 1.10108 1.18666 0.91335 0.84194 0.98657 1.85996 1.17963 1.29262 1.86768 1.23003 0.80053 0.96520 1.05557 1.23403 1.01118 1.02876 0.94432 1.23405 1.02418 1.00514 0.95475 1.20439 0.90448 0.98786 1.06139 1.69502 1.07993 1.23167 1.14993 0.91121 0.84760 0.85285 0.82938 0.86108 0.85979 0.85716 0.87894 0.87881 0.87863 0.87888 0.85039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -17.50 11.50 55.55 0.64 -16.86 16 2 C 0.07 1.59 5.49 -17.34 -0.10 1.50 16 3 Si 0.91 17.44 29.56 -169.99 -5.03 12.41 16 4 H -0.28 -5.14 7.11 56.52 0.40 -4.74 16 5 H -0.26 -4.99 7.11 56.52 0.40 -4.58 16 6 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 7 C -0.41 -10.38 9.15 -37.73 -0.35 -10.72 16 8 H 0.09 2.10 7.85 -52.48 -0.41 1.69 16 9 C 0.21 5.52 6.54 -84.84 -0.56 4.97 16 10 C -0.06 -1.47 10.98 -16.55 -0.18 -1.65 16 11 N -0.43 -10.79 10.47 -12.06 -0.13 -10.92 16 12 C -0.10 -2.49 10.62 -16.73 -0.18 -2.67 16 13 C 0.13 3.27 6.74 -82.76 -0.56 2.71 16 14 C 0.02 0.45 5.87 -104.92 -0.62 -0.17 16 15 C -0.11 -2.23 9.58 -39.22 -0.38 -2.61 16 16 C -0.09 -1.52 10.03 -39.66 -0.40 -1.92 16 17 C -0.21 -3.24 9.16 -39.37 -0.36 -3.60 16 18 C 0.12 1.93 6.67 -39.27 -0.26 1.67 16 19 O -0.29 -4.38 10.39 -19.47 -0.20 -4.59 16 20 C 0.01 0.06 6.22 -26.73 -0.17 -0.10 16 21 C -0.18 -1.65 10.48 -26.70 -0.28 -1.93 16 22 C -0.18 -1.66 10.48 -26.69 -0.28 -1.94 16 23 C -0.14 -2.60 9.37 -39.08 -0.37 -2.96 16 24 N -0.44 -11.71 7.15 -7.50 -0.05 -11.76 16 25 H 0.28 6.16 8.29 -40.82 -0.34 5.82 16 26 H 0.13 3.02 8.06 -52.49 -0.42 2.59 16 27 H 0.13 2.73 6.19 -52.49 -0.32 2.41 16 28 H 0.15 3.35 7.55 -52.48 -0.40 2.96 16 29 H 0.12 1.62 8.06 -52.48 -0.42 1.20 16 30 H 0.12 1.45 5.53 -52.48 -0.29 1.16 16 31 H 0.13 1.24 5.30 -51.93 -0.28 0.97 16 32 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.13 2.36 6.19 -52.49 -0.32 2.03 16 LS Contribution 313.36 15.07 4.72 4.72 Total: -1.00 -28.97 313.36 -8.76 -37.73 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -3.69 Total: 8.67 kcal Atomic # 6 Polarization: -14.39 SS G_CDS: -5.02 Total: -19.41 kcal Atomic # 7 Polarization: -40.00 SS G_CDS: 0.46 Total: -39.54 kcal Atomic # 8 Polarization: -4.38 SS G_CDS: -0.20 Total: -4.59 kcal Atomic # 14 Polarization: 17.44 SS G_CDS: -5.03 Total: 12.41 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.97 -8.76 -37.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242804722.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.166 kcal (2) G-P(sol) polarization free energy of solvation -28.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds