Wall clock time and date at job start Tue Mar 31 2020 05:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86802 * 119.99854 * 2 1 4 4 H 1.48499 * 109.47257 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46734 * 119.99718 * 3 2 1 6 6 H 1.48498 * 109.46770 * 239.99657 * 3 2 1 7 7 C 1.40046 * 119.99594 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99362 * 174.93326 * 7 2 1 9 9 C 1.41324 * 120.00497 * 354.93411 * 7 2 1 10 10 C 1.40868 * 120.14962 * 184.79179 * 9 7 2 11 11 N 1.31858 * 119.96228 * 179.79779 * 10 9 7 12 12 C 1.32210 * 120.28031 * 0.46423 * 11 10 9 13 13 C 1.39987 * 120.30122 * 359.76669 * 12 11 10 14 14 C 1.48303 * 119.98486 * 179.97438 * 13 12 11 15 15 C 1.39438 * 120.09861 * 180.02562 * 14 13 12 16 16 C 1.38005 * 119.98285 * 179.97438 * 15 14 13 17 17 C 1.38265 * 120.18687 * 359.97257 * 16 15 14 18 18 C 1.38794 * 120.19873 * 0.04999 * 17 16 15 19 19 O 1.35913 * 119.99335 * 179.97438 * 18 17 16 20 20 C 1.42898 * 116.99989 * 5.95968 * 19 18 17 21 21 C 1.52995 * 117.50188 * 214.33927 * 20 19 18 22 22 C 1.53000 * 117.49878 * 145.67920 * 20 19 18 23 23 C 1.38532 * 120.01313 * 359.69576 * 18 17 16 24 24 N 1.32549 * 120.03106 * 0.02562 * 13 12 11 25 25 H 0.96992 * 119.99806 * 0.02562 * 1 2 3 26 26 H 1.07994 * 120.01671 * 0.02562 * 10 9 7 27 27 H 1.07998 * 119.84733 * 179.75252 * 12 11 10 28 28 H 1.08003 * 120.01036 * 359.95436 * 15 14 13 29 29 H 1.08005 * 119.90781 * 180.02562 * 16 15 14 30 30 H 1.08004 * 119.90283 * 180.02562 * 17 16 15 31 31 H 1.08999 * 115.54945 * 0.02562 * 20 19 18 32 32 H 1.09007 * 117.49414 * 0.02562 * 21 20 19 33 33 H 1.09003 * 117.50056 * 145.01847 * 21 20 19 34 34 H 1.09000 * 117.49981 * 214.97865 * 22 20 19 35 35 H 1.08996 * 117.49681 * 0.02562 * 22 20 19 36 36 H 1.07997 * 120.09339 * 180.29985 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 1.2764 2.7465 -0.0006 5 1 3.0950 1.6964 1.2126 6 1 3.0951 1.6963 -1.2125 7 6 2.0075 -1.2129 0.0005 8 1 3.0845 -1.2147 -0.0821 9 6 1.3051 -2.4343 0.1092 10 6 2.0104 -3.6494 0.2116 11 7 1.3512 -4.7866 0.3167 12 6 0.0292 -4.7932 0.3174 13 6 -0.6832 -3.5929 0.2114 14 6 -2.1662 -3.6085 0.2123 15 6 -2.8781 -2.4143 0.1063 16 6 -4.2581 -2.4317 0.1068 17 6 -4.9382 -3.6309 0.2117 18 6 -4.2372 -4.8241 0.3181 19 8 -4.9100 -6.0004 0.4215 20 6 -6.3313 -5.9493 0.2827 21 6 -7.1586 -6.9266 1.1201 22 6 -7.0188 -7.1395 -0.3892 23 6 -2.8519 -4.8167 0.3131 24 7 -0.0329 -2.4424 0.1092 25 1 -0.4849 0.8400 -0.0004 26 1 3.0903 -3.6493 0.2076 27 1 -0.5036 -5.7290 0.3999 28 1 -2.3498 -1.4759 0.0240 29 1 -4.8083 -1.5060 0.0242 30 1 -6.0182 -3.6392 0.2112 31 1 -6.7509 -4.9593 0.1040 32 1 -6.6186 -7.6084 1.7773 33 1 -8.1226 -6.5797 1.4923 34 1 -7.8909 -6.9326 -1.0095 35 1 -6.3870 -7.9618 -0.7250 36 1 -2.3052 -5.7448 0.3909 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242804722.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:13 Heat of formation + Delta-G solvation = 47.343709 kcal Electronic energy + Delta-G solvation = -20546.930232 eV Core-core repulsion = 17382.791824 eV Total energy + Delta-G solvation = -3164.138407 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.34239 -40.68957 -38.75632 -36.21015 -35.95847 -34.25131 -33.08403 -31.16579 -30.23333 -27.95508 -25.59907 -24.44223 -23.66201 -23.33006 -22.92828 -21.38250 -19.60462 -19.24414 -17.69613 -17.45676 -17.00444 -16.68885 -16.44970 -16.10116 -15.91944 -15.24643 -15.03967 -14.85643 -14.63978 -14.47801 -13.57669 -13.30942 -13.24521 -13.22677 -12.96141 -12.63994 -12.43270 -12.35659 -12.06724 -11.89451 -11.73337 -11.50970 -11.32877 -11.26980 -10.88492 -10.25644 -9.39778 -9.37481 -8.95764 -8.40831 -6.68123 -0.20244 0.51086 0.87373 1.19413 1.42289 1.54648 1.56641 2.05061 2.19475 2.65016 2.83678 3.00781 3.51120 3.71148 3.81388 3.86132 3.99471 4.00924 4.04659 4.19068 4.26648 4.36554 4.49338 4.55154 4.72616 4.74453 4.80438 4.93514 4.99037 5.06434 5.14383 5.17822 5.20987 5.30976 5.53665 5.69079 5.78783 5.86710 6.10768 6.45934 6.50621 6.68747 7.24667 7.83078 8.29810 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.027025 B = 0.003936 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.830904 B = 7112.710803 C = 8069.243934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.739 5.739 2 C 0.022 3.978 3 Si 0.996 3.004 4 H -0.267 1.267 5 H -0.259 1.259 6 H -0.256 1.256 7 C -0.434 4.434 8 H 0.105 0.895 9 C 0.175 3.825 10 C -0.081 4.081 11 N -0.439 5.439 12 C -0.121 4.121 13 C 0.126 3.874 14 C -0.009 4.009 15 C -0.132 4.132 16 C -0.082 4.082 17 C -0.196 4.196 18 C 0.121 3.879 19 O -0.302 6.302 20 C -0.028 4.028 21 C -0.170 4.170 22 C -0.172 4.172 23 C -0.148 4.148 24 N -0.465 5.465 25 H 0.286 0.714 26 H 0.152 0.848 27 H 0.151 0.849 28 H 0.125 0.875 29 H 0.155 0.845 30 H 0.165 0.835 31 H 0.143 0.857 32 H 0.094 0.906 33 H 0.130 0.870 34 H 0.129 0.871 35 H 0.094 0.906 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.921 -2.969 0.035 15.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.359 5.359 2 C -0.202 4.202 3 Si 0.815 3.185 4 H -0.191 1.191 5 H -0.183 1.183 6 H -0.180 1.180 7 C -0.465 4.465 8 H 0.123 0.877 9 C 0.048 3.952 10 C -0.250 4.250 11 N -0.150 5.150 12 C -0.279 4.279 13 C -0.021 4.021 14 C -0.011 4.011 15 C -0.151 4.151 16 C -0.100 4.100 17 C -0.214 4.214 18 C 0.076 3.924 19 O -0.216 6.216 20 C -0.084 4.084 21 C -0.207 4.207 22 C -0.209 4.209 23 C -0.168 4.168 24 N -0.183 5.183 25 H 0.097 0.903 26 H 0.170 0.830 27 H 0.168 0.832 28 H 0.143 0.857 29 H 0.173 0.827 30 H 0.182 0.818 31 H 0.160 0.840 32 H 0.113 0.887 33 H 0.148 0.852 34 H 0.147 0.853 35 H 0.112 0.888 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -15.029 -3.045 0.065 15.335 hybrid contribution 0.750 0.469 0.021 0.885 sum -14.279 -2.577 0.086 14.510 Atomic orbital electron populations 1.70127 1.09019 1.30049 1.26736 1.27104 0.95861 1.04781 0.92451 0.85046 0.78552 0.74677 0.80214 1.19091 1.18284 1.18048 1.20069 0.95791 0.89675 1.40966 0.87738 1.19863 0.89363 0.94672 0.91264 1.23496 1.00236 0.89138 1.12150 1.67688 1.09333 1.30293 1.07710 1.22925 0.90598 0.98038 1.16330 1.21130 0.94286 0.91418 0.95297 1.18418 0.89857 0.93626 0.99207 1.21512 0.94887 0.98227 1.00516 1.21189 0.92814 0.98840 0.97168 1.21551 1.01541 0.91129 1.07188 1.18685 0.90754 0.85508 0.97418 1.85977 1.20473 1.28571 1.86554 1.23487 0.78039 0.98393 1.08442 1.23524 1.01449 1.01377 0.94367 1.23528 1.02506 0.98835 0.96057 1.20407 0.91825 0.97783 1.06754 1.69522 1.08192 1.24285 1.16340 0.90279 0.83032 0.83164 0.85670 0.82744 0.81756 0.83955 0.88715 0.85217 0.85291 0.88765 0.85187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -37.27 11.50 21.84 0.25 -37.02 16 2 C 0.02 1.06 5.49 85.29 0.47 1.53 16 3 Si 1.00 35.54 29.56 68.60 2.03 37.57 16 4 H -0.27 -9.03 7.11 99.48 0.71 -8.32 16 5 H -0.26 -9.00 7.11 99.48 0.71 -8.30 16 6 H -0.26 -8.83 7.11 99.48 0.71 -8.12 16 7 C -0.43 -22.47 9.15 23.47 0.21 -22.26 16 8 H 0.10 4.90 7.85 -2.91 -0.02 4.88 16 9 C 0.17 9.73 6.54 40.25 0.26 9.99 16 10 C -0.08 -4.23 10.98 85.33 0.94 -3.30 16 11 N -0.44 -22.89 10.47 -192.06 -2.01 -24.90 16 12 C -0.12 -6.04 10.62 85.06 0.90 -5.14 16 13 C 0.13 6.48 6.74 42.14 0.28 6.76 16 14 C -0.01 -0.42 5.87 -20.06 -0.12 -0.54 16 15 C -0.13 -5.39 9.58 22.50 0.22 -5.17 16 16 C -0.08 -2.51 10.03 22.22 0.22 -2.29 16 17 C -0.20 -5.31 9.16 22.41 0.21 -5.11 16 18 C 0.12 3.87 6.67 22.47 0.15 4.02 16 19 O -0.30 -8.69 10.39 -92.57 -0.96 -9.65 16 20 C -0.03 -0.55 6.22 30.59 0.19 -0.36 16 21 C -0.17 -2.52 10.48 30.62 0.32 -2.20 16 22 C -0.17 -2.59 10.48 30.62 0.32 -2.27 16 23 C -0.15 -5.62 9.37 22.59 0.21 -5.41 16 24 N -0.47 -26.10 7.15 -177.65 -1.27 -27.37 16 25 H 0.29 12.90 8.29 -92.71 -0.77 12.13 16 26 H 0.15 7.08 8.06 -2.91 -0.02 7.06 16 27 H 0.15 6.62 6.19 -2.91 -0.02 6.61 16 28 H 0.13 5.78 7.55 -2.91 -0.02 5.75 16 29 H 0.15 3.63 8.06 -2.91 -0.02 3.60 16 30 H 0.17 3.05 5.53 -2.91 -0.02 3.04 16 31 H 0.14 2.17 5.30 -2.39 -0.01 2.16 16 32 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 33 H 0.13 1.23 8.14 -2.39 -0.02 1.22 16 34 H 0.13 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.13 4.80 6.19 -2.91 -0.02 4.79 16 Total: -1.00 -66.17 313.36 3.94 -62.23 By element: Atomic # 1 Polarization: 29.76 SS G_CDS: 1.12 Total: 30.88 kcal Atomic # 6 Polarization: -36.53 SS G_CDS: 4.79 Total: -31.74 kcal Atomic # 7 Polarization: -86.26 SS G_CDS: -3.03 Total: -89.29 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: -0.96 Total: -9.65 kcal Atomic # 14 Polarization: 35.54 SS G_CDS: 2.03 Total: 37.57 kcal Total: -66.17 3.94 -62.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242804722.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.574 kcal (2) G-P(sol) polarization free energy of solvation -66.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds