Wall clock time and date at job start Tue Mar 31 2020 05:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.20830 * 120.00120 * 2 1 4 4 O 1.34268 * 120.00273 * 179.97438 * 2 1 3 5 5 C 1.35896 * 117.00325 * 183.54172 * 4 2 1 6 6 C 1.38829 * 119.93332 * 74.00171 * 5 4 2 7 7 C 1.37901 * 120.06547 * 180.02562 * 6 5 4 8 8 C 1.39372 * 119.93530 * 359.97438 * 7 6 5 9 9 C 1.48378 * 120.06517 * 180.02562 * 8 7 6 10 10 C 1.39739 * 120.00487 * 0.02562 * 9 8 7 11 11 C 1.38388 * 120.38189 * 179.72072 * 10 9 8 12 12 C 1.37718 * 120.37970 * 0.25437 * 11 10 9 13 13 C 1.40759 * 119.99184 * 0.02562 * 12 11 10 14 14 C 1.41422 * 120.18567 * 179.97438 * 13 12 11 15 15 H 1.08000 * 119.99633 * 210.14640 * 14 13 12 16 16 C 1.39920 * 120.00233 * 30.14423 * 14 13 12 17 17 N 1.30834 * 120.00211 * 15.15783 * 16 14 13 18 18 Si 1.86808 * 120.00044 * 195.15845 * 16 14 13 19 19 H 1.48499 * 109.46946 * 90.00193 * 18 16 14 20 20 H 1.48508 * 109.46746 * 209.99829 * 18 16 14 21 21 H 1.48496 * 109.47078 * 329.99403 * 18 16 14 22 22 C 1.38751 * 120.00103 * 180.23546 * 9 8 7 23 23 C 1.39367 * 119.87016 * 0.27743 * 8 7 6 24 24 C 1.37914 * 119.93376 * 359.44291 * 23 8 7 25 25 H 1.08999 * 109.47070 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47585 * 300.00283 * 1 2 3 27 27 H 1.09001 * 109.46839 * 60.00435 * 1 2 3 28 28 H 1.08005 * 119.96749 * 359.97438 * 6 5 4 29 29 H 1.08004 * 120.03353 * 179.97438 * 7 6 5 30 30 H 1.08006 * 119.80938 * 359.97438 * 10 9 8 31 31 H 1.07996 * 119.80905 * 180.27336 * 11 10 9 32 32 H 1.07998 * 120.00712 * 179.97438 * 12 11 10 33 33 H 0.97000 * 120.00186 * 180.02562 * 17 16 14 34 34 H 1.07992 * 120.18879 * 359.97438 * 22 9 8 35 35 H 1.08000 * 120.03837 * 179.73119 * 23 8 7 36 36 H 1.08000 * 119.96534 * 180.25201 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1111 1.0464 0.0000 4 8 2.1783 -1.1628 0.0005 5 6 3.5334 -1.0928 0.0753 6 6 4.1447 -0.7613 1.2769 7 6 5.5196 -0.6890 1.3557 8 6 6.2956 -0.9496 0.2277 9 6 7.7751 -0.8731 0.3094 10 6 8.3920 -0.5402 1.5182 11 6 9.7715 -0.4723 1.6047 12 6 10.5520 -0.7270 0.4990 13 6 9.9471 -1.0581 -0.7281 14 6 10.7446 -1.3200 -1.8663 15 1 10.3665 -1.0978 -2.8532 16 6 12.0235 -1.8667 -1.7137 17 7 12.3720 -2.4080 -0.5747 18 14 13.2335 -1.8239 -3.1363 19 1 14.0312 -0.5731 -3.0701 20 1 14.1419 -2.9955 -3.0489 21 1 12.4894 -1.8692 -4.4206 22 6 8.5461 -1.1280 -0.8157 23 6 5.6789 -1.2769 -0.9785 24 6 4.3037 -1.3534 -1.0499 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 3.5429 -0.5591 2.1506 29 1 5.9946 -0.4307 2.2906 30 1 7.7887 -0.3386 2.3912 31 1 10.2386 -0.2184 2.5447 32 1 11.6280 -0.6719 0.5731 33 1 13.2587 -2.7867 -0.4688 34 1 8.0726 -1.3827 -1.7522 35 1 6.2774 -1.4751 -1.8554 36 1 3.8255 -1.6110 -1.9833 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243361928.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:10 Heat of formation + Delta-G solvation = -40.403275 kcal Electronic energy + Delta-G solvation = -20232.749953 eV Core-core repulsion = 17032.513799 eV Total energy + Delta-G solvation = -3200.236153 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.104 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.21857 -38.88867 -37.44740 -36.48221 -33.73517 -31.54217 -31.02661 -30.38313 -29.81415 -27.51539 -25.38722 -23.48012 -22.75721 -21.37222 -20.32312 -20.00922 -18.24564 -17.43632 -16.94932 -16.51244 -15.67677 -15.08569 -15.04000 -14.66155 -14.17344 -13.47209 -13.40759 -13.23415 -13.18070 -13.07310 -12.73409 -12.55584 -12.34352 -11.82598 -11.65133 -11.47236 -11.19401 -11.03951 -10.92153 -10.68105 -10.53377 -10.32321 -9.76722 -9.42667 -9.27131 -8.77714 -8.74575 -7.52746 -7.03399 -6.77161 -4.42266 1.10241 1.61446 2.00322 2.62068 2.76548 3.05576 3.07717 3.10065 3.19521 3.92536 4.11995 4.56603 4.66155 4.88426 4.95005 5.06106 5.07856 5.32650 5.35510 5.61438 5.62149 5.69991 5.89834 6.07604 6.27580 6.30698 6.46648 6.51495 6.59994 6.73020 6.83964 6.95169 7.10159 7.19301 7.28227 7.48695 7.74692 7.78566 7.92952 7.97333 8.18693 8.54837 8.83564 8.87347 10.19969 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.034255 B = 0.003274 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.213672 B = 8550.453459 C = 9102.229824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.449 3.551 3 O -0.496 6.496 4 O -0.293 6.293 5 C 0.052 3.948 6 C -0.118 4.118 7 C -0.109 4.109 8 C -0.001 4.001 9 C -0.049 4.049 10 C -0.213 4.213 11 C -0.110 4.110 12 C -0.145 4.145 13 C 0.108 3.892 14 C -0.470 4.470 15 H 0.078 0.922 16 C 0.076 3.924 17 N -0.801 5.801 18 Si 0.909 3.091 19 H -0.268 1.268 20 H -0.278 1.278 21 H -0.263 1.263 22 C -0.195 4.195 23 C -0.108 4.108 24 C -0.112 4.112 25 H 0.092 0.908 26 H 0.105 0.895 27 H 0.105 0.895 28 H 0.121 0.879 29 H 0.132 0.868 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.115 0.885 33 H 0.280 0.720 34 H 0.099 0.901 35 H 0.137 0.863 36 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.085 1.221 1.335 16.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.293 3.707 3 O -0.381 6.381 4 O -0.209 6.209 5 C 0.012 3.988 6 C -0.137 4.137 7 C -0.127 4.127 8 C -0.001 4.001 9 C -0.049 4.049 10 C -0.232 4.232 11 C -0.128 4.128 12 C -0.164 4.164 13 C 0.106 3.894 14 C -0.500 4.500 15 H 0.096 0.904 16 C -0.141 4.141 17 N -0.427 5.427 18 Si 0.733 3.267 19 H -0.193 1.193 20 H -0.204 1.204 21 H -0.187 1.187 22 C -0.214 4.214 23 C -0.125 4.125 24 C -0.131 4.131 25 H 0.111 0.889 26 H 0.124 0.876 27 H 0.123 0.877 28 H 0.139 0.861 29 H 0.150 0.850 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.132 0.868 33 H 0.091 0.909 34 H 0.117 0.883 35 H 0.154 0.846 36 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -15.687 1.407 1.431 15.815 hybrid contribution 0.678 -0.084 -0.501 0.847 sum -15.009 1.322 0.930 15.096 Atomic orbital electron populations 1.21575 0.86672 1.05855 1.05885 1.24295 0.92065 0.81827 0.72549 1.90740 1.70619 1.32673 1.44067 1.84620 1.18518 1.34532 1.83190 1.18445 0.79742 1.06222 0.94411 1.21072 0.95386 1.00622 0.96572 1.21133 0.92176 1.00288 0.99083 1.19266 0.93862 0.94445 0.92560 1.18306 0.88975 1.02646 0.94941 1.20463 0.94313 1.12382 0.96029 1.20641 0.93434 1.01228 0.97517 1.21374 0.99370 1.02535 0.93141 1.17545 0.90701 0.87967 0.93167 1.19518 0.98656 1.37642 0.94146 0.90375 1.25854 0.98624 0.92724 0.96855 1.69800 1.20444 1.27017 1.25415 0.86308 0.80034 0.78542 0.81794 1.19328 1.20356 1.18655 1.21167 0.94023 1.09760 0.96437 1.21223 0.93172 0.99714 0.98426 1.20963 0.93907 1.01349 0.96846 0.88932 0.87641 0.87656 0.86134 0.85013 0.88869 0.88965 0.86750 0.90890 0.88281 0.84575 0.85576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.88 10.42 36.00 0.38 -0.51 16 2 C 0.45 5.48 7.90 36.00 0.28 5.76 16 3 O -0.50 -8.05 16.63 -18.75 -0.31 -8.36 16 4 O -0.29 -3.99 10.02 -23.54 -0.24 -4.23 16 5 C 0.05 0.83 5.15 -39.15 -0.20 0.63 16 6 C -0.12 -1.87 9.54 -39.49 -0.38 -2.25 16 7 C -0.11 -1.88 9.42 -39.28 -0.37 -2.25 16 8 C 0.00 -0.02 5.88 -104.88 -0.62 -0.64 16 9 C -0.05 -1.08 5.87 -104.97 -0.62 -1.70 16 10 C -0.21 -4.65 9.43 -38.97 -0.37 -5.01 16 11 C -0.11 -2.51 10.01 -39.72 -0.40 -2.91 16 12 C -0.14 -3.69 8.65 -38.82 -0.34 -4.02 16 13 C 0.11 2.84 5.51 -106.87 -0.59 2.25 16 14 C -0.47 -12.26 9.03 -37.74 -0.34 -12.61 16 15 H 0.08 1.96 7.89 -52.49 -0.41 1.55 16 16 C 0.08 1.90 5.15 -17.35 -0.09 1.81 16 17 N -0.80 -20.60 11.19 55.55 0.62 -19.98 16 18 Si 0.91 18.58 29.59 -169.99 -5.03 13.55 16 19 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 20 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 21 H -0.26 -5.31 7.11 56.52 0.40 -4.90 16 22 C -0.19 -4.66 9.17 -38.52 -0.35 -5.02 16 23 C -0.11 -1.89 9.42 -39.28 -0.37 -2.26 16 24 C -0.11 -1.78 9.97 -39.48 -0.39 -2.17 16 25 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.11 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.12 1.64 8.06 -52.48 -0.42 1.22 16 29 H 0.13 2.08 6.18 -52.48 -0.32 1.76 16 30 H 0.09 1.78 6.18 -52.48 -0.32 1.45 16 31 H 0.09 1.87 8.06 -52.49 -0.42 1.44 16 32 H 0.11 2.99 6.49 -52.49 -0.34 2.65 16 33 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 34 H 0.10 2.21 6.19 -52.49 -0.32 1.88 16 35 H 0.14 2.28 6.19 -52.49 -0.32 1.96 16 36 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 315.25 15.07 4.75 4.75 Total: -1.00 -30.03 315.25 -8.69 -38.72 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -3.72 Total: 6.44 kcal Atomic # 6 Polarization: -26.13 SS G_CDS: -4.76 Total: -30.89 kcal Atomic # 7 Polarization: -20.60 SS G_CDS: 0.62 Total: -19.98 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: -0.55 Total: -12.59 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.03 Total: 13.55 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.03 -8.69 -38.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243361928.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.683 kcal (2) G-P(sol) polarization free energy of solvation -30.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds