Wall clock time and date at job start Tue Mar 31 2020 05:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31550 * 1 3 3 Si 1.86804 * 119.99979 * 2 1 4 4 H 1.48502 * 109.47001 * 269.99758 * 3 2 1 5 5 H 1.48500 * 109.47061 * 29.99816 * 3 2 1 6 6 H 1.48497 * 109.46937 * 149.99779 * 3 2 1 7 7 C 1.38663 * 119.99898 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99996 * 359.97438 * 7 2 1 9 9 O 1.34817 * 119.99733 * 180.02562 * 7 2 1 10 10 C 1.35636 * 116.99763 * 185.03538 * 9 7 2 11 11 C 1.38776 * 120.14143 * 354.38449 * 10 9 7 12 12 C 1.38089 * 120.05179 * 180.02562 * 11 10 9 13 13 C 1.38458 * 120.33334 * 0.02562 * 12 11 10 14 14 C 1.37989 * 120.28013 * 0.02562 * 13 12 11 15 15 C 1.39325 * 119.94160 * 359.97438 * 14 13 12 16 16 C 1.48211 * 120.16484 * 179.97438 * 15 14 13 17 17 C 1.39785 * 120.18888 * 359.72423 * 16 15 14 18 18 C 1.38618 * 117.88540 * 179.73922 * 17 16 15 19 19 C 1.38749 * 118.07356 * 0.52254 * 18 17 16 20 20 C 1.50693 * 119.96319 * 179.70374 * 19 18 17 21 21 C 1.53002 * 117.49786 * 343.64977 * 20 19 18 22 22 C 1.53002 * 117.50081 * 275.02731 * 20 19 18 23 23 N 1.31941 * 120.07591 * 359.72929 * 19 18 17 24 24 N 1.28353 * 122.32041 * 0.02562 * 23 19 18 25 25 H 0.96998 * 119.99905 * 0.02562 * 1 2 3 26 26 H 1.08003 * 119.97102 * 0.02665 * 11 10 9 27 27 H 1.08001 * 119.83200 * 180.27952 * 12 11 10 28 28 H 1.08004 * 119.86156 * 179.97438 * 13 12 11 29 29 H 1.07996 * 120.03147 * 179.97438 * 14 13 12 30 30 H 1.08000 * 121.05668 * 359.97438 * 17 16 15 31 31 H 1.08003 * 120.96240 * 180.25350 * 18 17 16 32 32 H 1.09002 * 115.55336 * 129.35613 * 20 19 18 33 33 H 1.09004 * 117.49997 * 359.97438 * 21 20 19 34 34 H 1.09006 * 117.50253 * 145.02245 * 21 20 19 35 35 H 1.09003 * 117.50017 * 214.97544 * 22 20 19 36 36 H 1.08999 * 117.49843 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4469 2.6527 0.7000 6 1 3.5470 1.4402 0.7001 7 6 2.0088 -1.2009 0.0005 8 1 1.4688 -2.1361 0.0014 9 8 3.3570 -1.2008 0.0011 10 6 3.9728 -2.4047 -0.1045 11 6 3.2249 -3.5737 -0.0896 12 6 3.8538 -4.7984 -0.1967 13 6 5.2312 -4.8688 -0.3188 14 6 5.9883 -3.7152 -0.3340 15 6 5.3657 -2.4734 -0.2268 16 6 6.1741 -1.2313 -0.2421 17 6 7.5655 -1.2995 -0.3583 18 6 8.2740 -0.1082 -0.3731 19 6 7.5612 1.0769 -0.2607 20 6 8.2891 2.3963 -0.2652 21 6 9.7977 2.3718 -0.0110 22 6 8.8487 2.8990 1.0672 23 7 6.2468 1.0499 -0.1493 24 7 5.5813 -0.0476 -0.1394 25 1 -0.4850 0.8400 -0.0004 26 1 2.1502 -3.5254 0.0057 27 1 3.2680 -5.7056 -0.1893 28 1 5.7152 -5.8308 -0.4016 29 1 7.0624 -3.7749 -0.4290 30 1 8.0720 -2.2500 -0.4380 31 1 9.3501 -0.1028 -0.4650 32 1 7.9083 3.1411 -0.9641 33 1 10.2636 1.4012 0.1599 34 1 10.4097 3.1003 -0.5429 35 1 8.8364 3.9745 1.2446 36 1 8.6900 2.2756 1.9470 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243585257.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:39 Heat of formation + Delta-G solvation = 91.557945 kcal Electronic energy + Delta-G solvation = -21140.730432 eV Core-core repulsion = 17978.509298 eV Total energy + Delta-G solvation = -3162.221134 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.72696 -39.14091 -37.31018 -36.58963 -33.20276 -32.50571 -32.13905 -29.64236 -28.99083 -25.43316 -24.96436 -24.22802 -22.43120 -21.99516 -21.00283 -20.75634 -17.92298 -17.70083 -16.94966 -16.59243 -15.80228 -15.12360 -14.71843 -14.51020 -14.40601 -13.92822 -13.71019 -13.65904 -13.54165 -12.61433 -12.36074 -12.32330 -12.07947 -11.65649 -11.60146 -11.25241 -10.94266 -10.83594 -10.67822 -10.64906 -10.30988 -9.97360 -9.89214 -9.58421 -9.40842 -8.98825 -8.83275 -8.07540 -7.32762 -6.43875 -4.07289 0.90930 1.20006 2.17674 2.24911 3.39202 3.46918 3.57249 3.79006 3.95130 4.17606 4.43496 4.53330 4.63879 4.67500 4.73958 4.79985 4.81094 5.00813 5.09842 5.13008 5.22047 5.43996 5.49641 5.53531 5.65707 5.72117 5.86827 5.91125 5.94012 5.96362 6.12887 6.38698 6.43721 6.49278 6.64353 7.00639 7.07153 7.19771 7.51356 7.72351 7.97753 8.91184 9.29158 9.54108 10.60337 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.013177 B = 0.007159 C = 0.004707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.373020 B = 3910.115345 C = 5947.144190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.071 3.929 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.292 1.292 6 H -0.221 1.221 7 C -0.392 4.392 8 H 0.107 0.893 9 O -0.159 6.159 10 C 0.185 3.815 11 C -0.225 4.225 12 C -0.057 4.057 13 C -0.217 4.217 14 C -0.047 4.047 15 C -0.150 4.150 16 C 0.134 3.866 17 C -0.127 4.127 18 C -0.118 4.118 19 C 0.063 3.937 20 C -0.097 4.097 21 C -0.174 4.174 22 C -0.162 4.162 23 N -0.229 5.229 24 N -0.205 5.205 25 H 0.281 0.719 26 H 0.137 0.863 27 H 0.113 0.887 28 H 0.112 0.888 29 H 0.116 0.884 30 H 0.145 0.855 31 H 0.142 0.858 32 H 0.122 0.878 33 H 0.097 0.903 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.882 -1.303 -0.306 17.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.135 4.135 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.218 1.218 6 H -0.143 1.143 7 C -0.467 4.467 8 H 0.124 0.876 9 O -0.058 6.058 10 C 0.127 3.873 11 C -0.244 4.244 12 C -0.076 4.076 13 C -0.236 4.236 14 C -0.066 4.066 15 C -0.153 4.153 16 C -0.007 4.007 17 C -0.156 4.156 18 C -0.146 4.146 19 C -0.082 4.082 20 C -0.117 4.117 21 C -0.212 4.212 22 C -0.200 4.200 23 N -0.071 5.071 24 N -0.048 5.048 25 H 0.091 0.909 26 H 0.155 0.845 27 H 0.131 0.869 28 H 0.130 0.870 29 H 0.134 0.866 30 H 0.163 0.837 31 H 0.160 0.840 32 H 0.140 0.860 33 H 0.115 0.885 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 16.291 -0.027 -0.113 16.292 hybrid contribution 1.331 -0.289 -0.245 1.384 sum 17.623 -0.316 -0.358 17.629 Atomic orbital electron populations 1.69662 1.05952 1.28980 1.45959 1.24523 0.94969 0.99504 0.94482 0.86274 0.81986 0.79929 0.79837 1.20192 1.21795 1.14293 1.20923 0.77262 0.96683 1.51838 0.87602 1.83826 1.21887 1.24688 1.75382 1.19074 0.90553 0.85922 0.91706 1.21283 1.01343 0.91686 1.10087 1.20936 0.94375 0.96778 0.95485 1.20517 0.93982 0.97156 1.11959 1.20657 0.98466 0.90796 0.96731 1.17342 0.90025 0.90310 1.17659 1.21424 0.91134 0.94364 0.93735 1.22300 0.94387 0.99426 0.99478 1.22018 1.01432 0.92283 0.98902 1.21879 0.92793 0.94302 0.99181 1.20612 0.94269 0.95173 1.01631 1.23068 0.91687 1.03175 1.03259 1.22966 1.02728 1.01636 0.92659 1.73041 1.05795 1.20671 1.07605 1.73809 1.28541 0.93822 1.08621 0.90892 0.84519 0.86909 0.86999 0.86591 0.83717 0.84019 0.85980 0.88461 0.88070 0.88091 0.88695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.42 13.96 55.48 0.77 -24.65 16 2 C 0.07 2.03 5.49 -17.52 -0.10 1.94 16 3 Si 0.90 23.12 28.62 -169.99 -4.86 18.25 16 4 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.22 -5.82 6.71 56.52 0.38 -5.44 16 7 C -0.39 -11.11 9.95 30.89 0.31 -10.80 16 8 H 0.11 3.01 5.44 -52.49 -0.29 2.73 16 9 O -0.16 -4.25 6.46 0.44 0.00 -4.24 16 10 C 0.19 4.32 6.65 -38.72 -0.26 4.07 16 11 C -0.22 -4.75 9.16 -39.44 -0.36 -5.11 16 12 C -0.06 -0.98 10.03 -39.55 -0.40 -1.38 16 13 C -0.22 -3.41 10.03 -39.59 -0.40 -3.80 16 14 C -0.05 -0.77 9.43 -39.27 -0.37 -1.14 16 15 C -0.15 -3.03 5.89 -104.73 -0.62 -3.65 16 16 C 0.13 2.67 6.81 -82.78 -0.56 2.11 16 17 C -0.13 -1.90 9.55 -38.86 -0.37 -2.27 16 18 C -0.12 -1.60 9.43 -39.25 -0.37 -1.97 16 19 C 0.06 1.02 6.54 -82.36 -0.54 0.48 16 20 C -0.10 -1.20 6.23 -91.77 -0.57 -1.77 16 21 C -0.17 -1.54 9.81 -26.73 -0.26 -1.80 16 22 C -0.16 -1.69 10.23 -26.73 -0.27 -1.97 16 23 N -0.23 -4.82 11.42 33.62 0.38 -4.43 16 24 N -0.20 -4.71 8.96 33.35 0.30 -4.41 16 25 H 0.28 7.64 8.31 -40.82 -0.34 7.30 16 26 H 0.14 3.00 5.64 -52.48 -0.30 2.71 16 27 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 28 H 0.11 1.40 8.06 -52.48 -0.42 0.98 16 29 H 0.12 1.45 6.25 -52.49 -0.33 1.13 16 30 H 0.15 1.63 6.30 -52.49 -0.33 1.30 16 31 H 0.14 1.35 6.35 -52.48 -0.33 1.02 16 32 H 0.12 1.47 8.14 -51.93 -0.42 1.05 16 33 H 0.10 0.76 6.43 -51.93 -0.33 0.43 16 34 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 308.99 15.07 4.66 4.66 Total: -1.00 -32.32 308.99 -7.49 -39.80 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -3.60 Total: 2.11 kcal Atomic # 6 Polarization: -21.95 SS G_CDS: -5.14 Total: -27.09 kcal Atomic # 7 Polarization: -34.95 SS G_CDS: 1.46 Total: -33.49 kcal Atomic # 8 Polarization: -4.25 SS G_CDS: 0.00 Total: -4.24 kcal Atomic # 14 Polarization: 23.12 SS G_CDS: -4.86 Total: 18.25 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.32 -7.49 -39.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243585257.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.363 kcal (2) G-P(sol) polarization free energy of solvation -32.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds