Wall clock time and date at job start Tue Mar 31 2020 05:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31543 * 1 3 3 Si 1.86803 * 120.00136 * 2 1 4 4 H 1.48499 * 109.47028 * 270.00186 * 3 2 1 5 5 H 1.48496 * 109.47022 * 30.00008 * 3 2 1 6 6 H 1.48501 * 109.47075 * 150.00436 * 3 2 1 7 7 C 1.38678 * 120.00132 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99312 * 359.97438 * 7 2 1 9 9 O 1.34812 * 120.00321 * 179.97438 * 7 2 1 10 10 C 1.35615 * 116.99915 * 185.12699 * 9 7 2 11 11 C 1.38785 * 120.14257 * 6.11407 * 10 9 7 12 12 C 1.38080 * 120.05253 * 180.02562 * 11 10 9 13 13 C 1.38485 * 120.34500 * 0.02562 * 12 11 10 14 14 C 1.37965 * 120.27771 * 359.67702 * 13 12 11 15 15 C 1.39369 * 119.94250 * 0.62121 * 14 13 12 16 16 C 1.48142 * 120.17148 * 179.67351 * 15 14 13 17 17 C 1.39849 * 120.56103 * 311.66847 * 16 15 14 18 18 C 1.38266 * 118.28691 * 179.97438 * 17 16 15 19 19 N 1.32471 * 119.20135 * 359.97438 * 18 17 16 20 20 C 1.31819 * 121.07133 * 0.02562 * 19 18 17 21 21 C 1.50698 * 119.05234 * 179.97438 * 20 19 18 22 22 C 1.52992 * 117.50467 * 299.99920 * 21 20 19 23 23 C 1.53003 * 60.03300 * 107.48001 * 22 21 20 24 24 N 1.31666 * 121.89001 * 0.27430 * 20 19 18 25 25 H 0.96998 * 119.99871 * 359.97438 * 1 2 3 26 26 H 1.08001 * 119.97713 * 0.02962 * 11 10 9 27 27 H 1.07997 * 119.83324 * 179.97438 * 12 11 10 28 28 H 1.08001 * 119.85889 * 179.97438 * 13 12 11 29 29 H 1.08003 * 120.02644 * 180.29697 * 14 13 12 30 30 H 1.08000 * 120.85250 * 359.96586 * 17 16 15 31 31 H 1.08003 * 120.39901 * 179.97438 * 18 17 16 32 32 H 1.09004 * 115.54915 * 154.32969 * 21 20 19 33 33 H 1.09001 * 117.50401 * 214.97945 * 22 21 20 34 34 H 1.09004 * 117.49678 * 359.97438 * 22 21 20 35 35 H 1.08994 * 117.49587 * 107.50724 * 23 22 21 36 36 H 1.09005 * 117.49643 * 252.52404 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4969 2.0464 -1.4001 5 1 1.4470 2.6526 0.7000 6 1 3.5471 1.4401 0.7000 7 6 2.0088 -1.2010 -0.0005 8 1 1.4687 -2.1363 -0.0005 9 8 3.3570 -1.2010 -0.0011 10 6 3.9725 -2.4045 -0.1095 11 6 3.2255 -3.5511 -0.3407 12 6 3.8541 -4.7756 -0.4504 13 6 5.2306 -4.8686 -0.3303 14 6 5.9874 -3.7370 -0.1065 15 6 5.3646 -2.4959 0.0124 16 6 6.1716 -1.2785 0.2599 17 6 7.1445 -1.2623 1.2644 18 6 7.8708 -0.1013 1.4545 19 7 7.6240 0.9487 0.6854 20 6 6.7000 0.9021 -0.2535 21 6 6.4565 2.1235 -1.1019 22 6 6.0228 3.4050 -0.3876 23 6 7.4373 3.2901 -0.9592 24 7 5.9796 -0.1791 -0.4674 25 1 -0.4850 0.8400 0.0004 26 1 2.1516 -3.4856 -0.4351 27 1 3.2693 -5.6656 -0.6299 28 1 5.7142 -5.8304 -0.4169 29 1 7.0611 -3.8135 -0.0182 30 1 7.3237 -2.1343 1.8759 31 1 8.6302 -0.0510 2.2209 32 1 6.0404 1.9334 -2.0913 33 1 5.3215 4.0581 -0.9070 34 1 5.9130 3.3646 0.6962 35 1 7.6667 3.8676 -1.8547 36 1 8.2582 3.1737 -0.2516 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243585273.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:49 Heat of formation + Delta-G solvation = 75.475693 kcal Electronic energy + Delta-G solvation = -21424.831781 eV Core-core repulsion = 18261.913268 eV Total energy + Delta-G solvation = -3162.918513 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.75236 -39.17277 -36.96776 -36.54045 -33.60064 -32.46687 -31.99992 -29.68797 -29.11828 -25.40999 -24.95083 -24.17641 -22.25478 -22.07678 -21.20810 -20.29764 -17.95753 -17.55672 -17.31729 -16.29054 -15.38460 -15.05307 -14.95294 -14.71050 -14.17969 -14.13484 -13.87325 -13.77093 -13.49725 -12.86891 -12.42599 -12.27163 -11.97788 -11.58179 -11.41960 -11.09555 -10.92976 -10.83412 -10.73527 -10.58793 -10.38419 -10.22162 -10.13302 -9.55101 -9.06008 -8.93512 -8.80329 -8.23101 -7.44968 -6.50500 -4.15228 1.07359 1.35020 2.07728 2.19094 3.20978 3.26723 3.44804 3.74329 4.00675 4.21523 4.23892 4.42620 4.47124 4.71265 4.78588 5.01654 5.01838 5.16144 5.21683 5.34818 5.41361 5.45301 5.65910 5.72599 5.74526 5.85491 5.94645 5.96493 6.14832 6.24917 6.30968 6.39198 6.55598 6.70710 6.92495 7.04495 7.16241 7.42243 7.47602 7.67739 7.92539 8.53017 8.84697 9.47282 10.55749 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.011670 B = 0.009097 C = 0.005458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2398.760195 B = 3077.114687 C = 5129.002324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.069 3.931 3 Si 0.904 3.096 4 H -0.269 1.269 5 H -0.285 1.285 6 H -0.257 1.257 7 C -0.391 4.391 8 H 0.108 0.892 9 O -0.187 6.187 10 C 0.191 3.809 11 C -0.223 4.223 12 C -0.059 4.059 13 C -0.212 4.212 14 C -0.046 4.046 15 C -0.148 4.148 16 C 0.257 3.743 17 C -0.235 4.235 18 C 0.144 3.856 19 N -0.535 5.535 20 C 0.350 3.650 21 C -0.099 4.099 22 C -0.159 4.159 23 C -0.153 4.153 24 N -0.490 5.490 25 H 0.281 0.719 26 H 0.137 0.863 27 H 0.114 0.886 28 H 0.113 0.887 29 H 0.116 0.884 30 H 0.144 0.856 31 H 0.163 0.837 32 H 0.127 0.873 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.577 -0.597 0.650 13.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.136 4.136 3 Si 0.730 3.270 4 H -0.194 1.194 5 H -0.211 1.211 6 H -0.180 1.180 7 C -0.466 4.466 8 H 0.125 0.875 9 O -0.088 6.088 10 C 0.136 3.864 11 C -0.242 4.242 12 C -0.077 4.077 13 C -0.231 4.231 14 C -0.065 4.065 15 C -0.151 4.151 16 C 0.112 3.888 17 C -0.257 4.257 18 C -0.021 4.021 19 N -0.250 5.250 20 C 0.082 3.918 21 C -0.119 4.119 22 C -0.197 4.197 23 C -0.191 4.191 24 N -0.203 5.203 25 H 0.091 0.909 26 H 0.155 0.845 27 H 0.132 0.868 28 H 0.131 0.869 29 H 0.134 0.866 30 H 0.162 0.838 31 H 0.180 0.820 32 H 0.145 0.855 33 H 0.119 0.881 34 H 0.114 0.886 35 H 0.116 0.884 36 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 13.262 0.604 0.127 13.277 hybrid contribution 0.086 -0.282 0.553 0.626 sum 13.348 0.322 0.679 13.369 Atomic orbital electron populations 1.69642 1.05637 1.28739 1.46827 1.24467 0.94978 0.99004 0.95141 0.86165 0.80298 0.81096 0.79480 1.19399 1.21130 1.18039 1.20843 0.76944 0.96703 1.52148 0.87479 1.83663 1.22347 1.25161 1.77658 1.18984 0.90285 0.85871 0.91302 1.21265 1.01345 0.92029 1.09596 1.20937 0.94372 0.96665 0.95764 1.20545 0.93970 0.97507 1.11112 1.20622 0.98509 0.90555 0.96822 1.17447 0.89959 0.90960 1.16734 1.20054 0.89302 0.91130 0.88314 1.22824 1.00246 1.01267 1.01353 1.22948 0.96003 0.87850 0.95272 1.67989 1.19250 1.30748 1.07042 1.21979 0.86960 0.92387 0.90425 1.20618 1.06486 0.85313 0.99447 1.22973 0.98148 0.97881 1.00746 1.22993 0.93696 0.99149 1.03239 1.68362 1.24626 0.99396 1.27897 0.90902 0.84497 0.86843 0.86901 0.86593 0.83850 0.81950 0.85491 0.88123 0.88627 0.88440 0.87326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.11 13.96 55.48 0.77 -24.34 16 2 C 0.07 1.94 5.49 -17.51 -0.10 1.85 16 3 Si 0.90 22.53 28.62 -169.99 -4.86 17.66 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.26 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.39 -10.99 9.90 30.89 0.31 -10.69 16 8 H 0.11 3.03 5.53 -52.48 -0.29 2.74 16 9 O -0.19 -4.96 7.54 0.52 0.00 -4.96 16 10 C 0.19 4.44 6.63 -38.71 -0.26 4.19 16 11 C -0.22 -4.70 9.12 -39.44 -0.36 -5.06 16 12 C -0.06 -1.01 10.03 -39.55 -0.40 -1.41 16 13 C -0.21 -3.34 10.03 -39.59 -0.40 -3.74 16 14 C -0.05 -0.76 9.52 -39.26 -0.37 -1.13 16 15 C -0.15 -3.00 5.66 -104.74 -0.59 -3.60 16 16 C 0.26 5.11 6.08 -82.60 -0.50 4.61 16 17 C -0.23 -3.72 9.63 -38.97 -0.38 -4.10 16 18 C 0.14 2.12 11.29 -17.27 -0.19 1.92 16 19 N -0.54 -9.17 9.33 -10.80 -0.10 -9.27 16 20 C 0.35 6.72 7.31 -157.28 -1.15 5.57 16 21 C -0.10 -1.64 6.24 -91.74 -0.57 -2.22 16 22 C -0.16 -2.37 10.23 -26.73 -0.27 -2.64 16 23 C -0.15 -1.98 10.01 -26.69 -0.27 -2.24 16 24 N -0.49 -10.58 9.65 -7.31 -0.07 -10.65 16 25 H 0.28 7.49 8.31 -40.82 -0.34 7.16 16 26 H 0.14 3.00 5.72 -52.49 -0.30 2.70 16 27 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 28 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 29 H 0.12 1.57 8.02 -52.48 -0.42 1.15 16 30 H 0.14 1.82 8.06 -52.49 -0.42 1.40 16 31 H 0.16 1.67 8.06 -52.48 -0.42 1.25 16 32 H 0.13 2.08 8.14 -51.93 -0.42 1.66 16 33 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 35 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.11 1.41 7.54 -51.93 -0.39 1.02 16 LS Contribution 317.51 15.07 4.78 4.78 Total: -1.00 -31.50 317.51 -8.89 -40.39 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -3.92 Total: 5.06 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: -5.50 Total: -18.68 kcal Atomic # 7 Polarization: -44.86 SS G_CDS: 0.60 Total: -44.26 kcal Atomic # 8 Polarization: -4.96 SS G_CDS: 0.00 Total: -4.96 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -4.86 Total: 17.66 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.50 -8.89 -40.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243585273.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.867 kcal (2) G-P(sol) polarization free energy of solvation -31.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds