Wall clock time and date at job start Tue Mar 31 2020 05:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31547 * 1 3 3 Si 1.86802 * 120.00217 * 2 1 4 4 H 1.48499 * 109.46961 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46781 * 299.99840 * 3 2 1 6 6 H 1.48494 * 109.46947 * 60.00043 * 3 2 1 7 7 C 1.38675 * 119.99863 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99642 * 179.97438 * 7 2 1 9 9 O 1.34817 * 119.99988 * 359.97438 * 7 2 1 10 10 C 1.35612 * 116.99950 * 185.06264 * 9 7 2 11 11 C 1.38798 * 120.14155 * 354.40417 * 10 9 7 12 12 C 1.38072 * 120.04933 * 179.97438 * 11 10 9 13 13 C 1.38483 * 120.34730 * 0.02562 * 12 11 10 14 14 C 1.37964 * 120.27763 * 359.69554 * 13 12 11 15 15 C 1.39371 * 119.94155 * 0.55464 * 14 13 12 16 16 C 1.48141 * 120.16776 * 179.74507 * 15 14 13 17 17 N 1.32675 * 119.20728 * 179.72739 * 16 15 14 18 18 C 1.32184 * 120.68174 * 179.97438 * 17 16 15 19 19 C 1.38698 * 119.16566 * 359.97438 * 18 17 16 20 20 C 1.38531 * 118.72426 * 0.02562 * 19 18 17 21 21 N 1.32312 * 119.09838 * 359.96670 * 20 19 18 22 22 C 1.51189 * 109.69217 * 179.97438 * 20 19 18 23 23 C 1.54654 * 105.21211 * 17.10456 * 22 20 19 24 24 C 1.51089 * 131.43064 * 180.02562 * 19 18 17 25 25 H 0.96994 * 119.99256 * 0.02562 * 1 2 3 26 26 H 1.07995 * 119.97358 * 359.95532 * 11 10 9 27 27 H 1.08006 * 119.82506 * 179.97438 * 12 11 10 28 28 H 1.07998 * 119.85856 * 179.97438 * 13 12 11 29 29 H 1.08001 * 120.02786 * 180.30115 * 14 13 12 30 30 H 1.08004 * 120.41482 * 179.97438 * 18 17 16 31 31 H 1.09000 * 110.30105 * 136.01935 * 22 20 19 32 32 H 1.09003 * 110.29903 * 258.16057 * 22 20 19 33 33 H 1.09001 * 110.88866 * 215.58314 * 23 22 20 34 34 H 1.09001 * 110.83925 * 91.98897 * 23 22 20 35 35 H 1.08999 * 110.30241 * 281.86723 * 24 19 18 36 36 H 1.08994 * 110.30211 * 43.92480 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7095 1.3463 -0.0006 5 1 1.8908 2.3964 -1.2126 6 1 1.8908 2.3964 1.2125 7 6 2.0088 -1.2010 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0005 10 6 2.0692 -3.5035 0.1056 11 6 3.4557 -3.4403 0.0911 12 6 4.2017 -4.5971 0.1998 13 6 3.5741 -5.8254 0.3231 14 6 2.1969 -5.9038 0.3448 15 6 1.4322 -4.7441 0.2307 16 6 -0.0470 -4.8231 0.2477 17 7 -0.7561 -3.7067 0.1432 18 6 -2.0774 -3.7433 0.1546 19 6 -2.7186 -4.9671 0.2770 20 6 -1.9492 -6.1141 0.3842 21 7 -0.6304 -6.0083 0.3659 22 6 -2.8499 -7.3221 0.5071 23 6 -4.2398 -6.8425 0.0276 24 6 -4.1853 -5.3274 0.3201 25 1 -0.4849 0.8401 -0.0004 26 1 3.9513 -2.4857 -0.0055 27 1 5.2804 -4.5438 0.1877 28 1 4.1653 -6.7252 0.4072 29 1 1.7117 -6.8633 0.4460 30 1 -2.6505 -2.8318 0.0696 31 1 -2.4886 -8.1296 -0.1296 32 1 -2.9009 -7.6518 1.5449 33 1 -5.0347 -7.3193 0.6012 34 1 -4.3667 -7.0265 -1.0392 35 1 -4.5974 -5.1178 1.3072 36 1 -4.7331 -4.7747 -0.4430 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243585274.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:20 Heat of formation + Delta-G solvation = 52.662631 kcal Electronic energy + Delta-G solvation = -21213.682858 eV Core-core repulsion = 18049.775097 eV Total energy + Delta-G solvation = -3163.907761 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.73133 -38.91194 -36.64449 -36.14162 -33.02571 -32.33575 -31.08635 -29.23625 -28.57700 -27.46441 -25.34555 -23.91479 -22.63887 -21.38015 -20.75925 -20.36296 -17.91839 -17.14794 -17.04480 -15.90832 -15.56349 -14.64197 -14.39486 -14.18732 -14.00748 -13.92666 -13.46834 -13.28409 -12.90531 -12.84770 -12.55081 -12.41005 -12.03668 -11.68088 -11.41962 -11.21561 -11.13045 -10.86513 -10.83052 -10.68392 -10.42944 -10.07206 -9.90340 -9.31473 -9.06582 -8.82620 -8.30292 -7.82550 -7.10089 -6.44629 -3.99263 1.16328 1.78710 2.40228 2.45252 3.12212 3.13394 3.18194 3.94929 4.07613 4.30613 4.55942 4.77965 4.80716 4.91530 4.96764 5.13104 5.19433 5.29006 5.44442 5.60034 5.69751 5.71477 5.77526 5.82006 5.88799 5.99956 6.04784 6.10600 6.17966 6.30641 6.47866 6.71409 6.80539 7.01688 7.08861 7.27436 7.37042 7.38836 7.72697 7.85814 7.96782 8.92255 8.98041 9.72647 10.69787 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.015657 B = 0.005994 C = 0.004358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.894184 B = 4670.260153 C = 6423.283927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.045 3.955 3 Si 0.938 3.062 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.397 4.397 8 H 0.092 0.908 9 O -0.118 6.118 10 C 0.181 3.819 11 C -0.242 4.242 12 C -0.053 4.053 13 C -0.232 4.232 14 C -0.021 4.021 15 C -0.142 4.142 16 C 0.377 3.623 17 N -0.456 5.456 18 C 0.172 3.828 19 C -0.246 4.246 20 C 0.157 3.843 21 N -0.525 5.525 22 C -0.068 4.068 23 C -0.118 4.118 24 C -0.066 4.066 25 H 0.268 0.732 26 H 0.131 0.869 27 H 0.109 0.891 28 H 0.109 0.891 29 H 0.124 0.876 30 H 0.159 0.841 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.961 -9.748 0.654 10.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.162 4.162 3 Si 0.762 3.238 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.473 4.473 8 H 0.109 0.891 9 O -0.015 6.015 10 C 0.121 3.879 11 C -0.262 4.262 12 C -0.072 4.072 13 C -0.251 4.251 14 C -0.041 4.041 15 C -0.146 4.146 16 C 0.117 3.883 17 N -0.168 5.168 18 C 0.004 3.996 19 C -0.250 4.250 20 C 0.008 3.992 21 N -0.240 5.240 22 C -0.106 4.106 23 C -0.156 4.156 24 C -0.104 4.104 25 H 0.078 0.922 26 H 0.148 0.852 27 H 0.127 0.873 28 H 0.128 0.872 29 H 0.142 0.858 30 H 0.177 0.823 31 H 0.102 0.898 32 H 0.106 0.894 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.424 -9.401 0.614 10.408 hybrid contribution -0.316 0.912 0.025 0.965 sum -4.740 -8.489 0.639 9.743 Atomic orbital electron populations 1.70120 1.05838 1.27220 1.43544 1.25290 0.95796 0.98697 0.96383 0.85704 0.79311 0.80530 0.78220 1.19061 1.20163 1.20161 1.21557 0.91947 0.81417 1.52420 0.89060 1.84252 1.32955 1.10610 1.73717 1.19307 0.89929 0.87521 0.91158 1.21102 0.93315 0.99239 1.12505 1.20891 0.98566 0.92384 0.95357 1.20516 0.94029 0.97086 1.13495 1.20794 0.93102 0.96506 0.93650 1.17094 0.86983 0.92003 1.18506 1.21270 0.94368 0.82748 0.89954 1.69011 1.06181 1.29728 1.11908 1.22810 0.90458 0.96282 0.90090 1.22117 0.98150 0.96462 1.08321 1.21900 0.89428 0.95799 0.92035 1.67551 1.10784 1.28791 1.16886 1.20984 0.92356 0.94581 1.02670 1.22363 0.96114 0.95386 1.01716 1.20751 0.91706 0.95766 1.02172 0.92239 0.85179 0.87297 0.87249 0.85790 0.82332 0.89835 0.89359 0.90179 0.90817 0.90431 0.90684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.64 13.67 55.48 0.76 -22.88 16 2 C 0.05 1.22 5.49 -17.51 -0.10 1.12 16 3 Si 0.94 20.16 29.55 -169.99 -5.02 15.14 16 4 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 5 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 6 H -0.28 -5.85 7.11 56.52 0.40 -5.44 16 7 C -0.40 -10.95 9.49 30.89 0.29 -10.66 16 8 H 0.09 2.34 5.21 -52.49 -0.27 2.06 16 9 O -0.12 -3.34 7.55 0.51 0.00 -3.34 16 10 C 0.18 4.54 6.65 -38.71 -0.26 4.29 16 11 C -0.24 -5.35 9.16 -39.44 -0.36 -5.72 16 12 C -0.05 -0.99 10.03 -39.55 -0.40 -1.39 16 13 C -0.23 -4.21 10.03 -39.59 -0.40 -4.61 16 14 C -0.02 -0.41 9.56 -39.26 -0.38 -0.79 16 15 C -0.14 -3.33 5.89 -104.74 -0.62 -3.95 16 16 C 0.38 8.83 7.55 -156.92 -1.19 7.65 16 17 N -0.46 -11.16 8.17 -11.17 -0.09 -11.25 16 18 C 0.17 3.47 11.30 -17.23 -0.19 3.28 16 19 C -0.25 -4.13 6.21 -104.15 -0.65 -4.78 16 20 C 0.16 2.72 7.37 -82.04 -0.60 2.12 16 21 N -0.53 -10.83 9.46 -7.29 -0.07 -10.90 16 22 C -0.07 -0.81 6.77 -26.77 -0.18 -1.00 16 23 C -0.12 -1.14 7.10 -25.13 -0.18 -1.32 16 24 C -0.07 -0.77 6.76 -26.96 -0.18 -0.95 16 25 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 26 H 0.13 2.81 5.64 -52.49 -0.30 2.52 16 27 H 0.11 1.67 8.06 -52.48 -0.42 1.24 16 28 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 29 H 0.12 2.28 7.51 -52.49 -0.39 1.89 16 30 H 0.16 2.94 8.06 -52.48 -0.42 2.51 16 31 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 308.77 15.07 4.65 4.65 Total: -1.00 -31.96 308.77 -9.05 -41.02 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -3.90 Total: 4.26 kcal Atomic # 6 Polarization: -11.32 SS G_CDS: -5.38 Total: -16.70 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: 0.60 Total: -45.03 kcal Atomic # 8 Polarization: -3.34 SS G_CDS: 0.00 Total: -3.34 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.96 -9.05 -41.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243585274.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.679 kcal (2) G-P(sol) polarization free energy of solvation -31.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds