Wall clock time and date at job start Tue Mar 31 2020 05:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31547 * 1 3 3 Si 1.86799 * 119.99820 * 2 1 4 4 H 1.48500 * 109.46894 * 269.99762 * 3 2 1 5 5 H 1.48494 * 109.47356 * 30.00039 * 3 2 1 6 6 H 1.48503 * 109.46855 * 150.00186 * 3 2 1 7 7 C 1.38662 * 119.99854 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00197 * 0.02562 * 7 2 1 9 9 O 1.34820 * 119.99903 * 179.97438 * 7 2 1 10 10 C 1.35615 * 116.99949 * 185.01665 * 9 7 2 11 11 C 1.38798 * 120.14608 * 354.37228 * 10 9 7 12 12 C 1.38072 * 120.05803 * 179.97438 * 11 10 9 13 13 C 1.38485 * 120.33840 * 359.97438 * 12 11 10 14 14 C 1.37964 * 120.28568 * 359.71752 * 13 12 11 15 15 C 1.39382 * 119.93582 * 0.57231 * 14 13 12 16 16 C 1.48141 * 120.16162 * 179.69728 * 15 14 13 17 17 N 1.32671 * 119.22366 * 179.74943 * 16 15 14 18 18 C 1.32178 * 120.73222 * 179.97438 * 17 16 15 19 19 C 1.38704 * 119.20423 * 359.97438 * 18 17 16 20 20 C 1.50704 * 120.70890 * 179.97438 * 19 18 17 21 21 C 1.52994 * 117.50016 * 188.74783 * 20 19 18 22 22 C 1.53003 * 117.49595 * 120.08923 * 20 19 18 23 23 C 1.38695 * 118.57930 * 0.02562 * 19 18 17 24 24 N 1.32175 * 119.20589 * 359.97438 * 23 19 18 25 25 H 0.96996 * 120.00179 * 359.97438 * 1 2 3 26 26 H 1.08000 * 119.96768 * 359.97438 * 11 10 9 27 27 H 1.07999 * 119.82915 * 179.97438 * 12 11 10 28 28 H 1.07999 * 119.85841 * 179.97438 * 13 12 11 29 29 H 1.07991 * 120.03338 * 180.28588 * 14 13 12 30 30 H 1.08001 * 120.39766 * 180.28242 * 18 17 16 31 31 H 1.09002 * 115.55043 * 334.42153 * 20 19 18 32 32 H 1.09002 * 117.49548 * 0.02562 * 21 20 19 33 33 H 1.09000 * 117.50111 * 145.01799 * 21 20 19 34 34 H 1.09003 * 117.49522 * 214.97826 * 22 20 19 35 35 H 1.08998 * 117.49893 * 0.02562 * 22 20 19 36 36 H 1.08002 * 120.39529 * 180.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2494 1.6178 0.0000 4 1 2.4969 2.0464 -1.4001 5 1 1.4469 2.6527 0.7000 6 1 3.5470 1.4401 0.7000 7 6 2.0088 -1.2009 0.0005 8 1 1.4687 -2.1362 0.0005 9 8 3.3570 -1.2009 0.0000 10 6 3.9726 -2.4047 -0.1051 11 6 3.2247 -3.5738 -0.0885 12 6 3.8533 -4.7984 -0.1961 13 6 5.2307 -4.8691 -0.3217 14 6 5.9872 -3.7156 -0.3461 15 6 5.3653 -2.4734 -0.2322 16 6 6.1734 -1.2319 -0.2511 17 7 5.5617 -0.0593 -0.1464 18 6 6.2535 1.0669 -0.1594 19 6 7.6339 1.0119 -0.2837 20 6 8.4558 2.2749 -0.3030 21 6 9.9410 2.1460 -0.6471 22 6 9.5116 2.4473 0.7909 23 6 8.2413 -0.2303 -0.3911 24 7 7.4917 -1.3187 -0.3714 25 1 -0.4850 0.8400 0.0004 26 1 2.1502 -3.5256 0.0087 27 1 3.2679 -5.7059 -0.1824 28 1 5.7144 -5.8311 -0.4049 29 1 7.0605 -3.7752 -0.4488 30 1 5.7504 2.0184 -0.0692 31 1 7.9355 3.1693 -0.6457 32 1 10.3235 1.1478 -0.8601 33 1 10.3979 2.9558 -1.2161 34 1 9.6861 3.4552 1.1675 35 1 9.6119 1.6471 1.5242 36 1 9.3142 -0.3073 -0.4889 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243585613.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:23 Heat of formation + Delta-G solvation = 83.283911 kcal Electronic energy + Delta-G solvation = -21144.452447 eV Core-core repulsion = 17981.872524 eV Total energy + Delta-G solvation = -3162.579923 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.75761 -39.07639 -37.37789 -36.48192 -33.29853 -32.52396 -32.10781 -29.59692 -28.97514 -25.44913 -24.69350 -24.26133 -22.51734 -21.75606 -21.21688 -20.50990 -17.88123 -17.73327 -17.20692 -16.57776 -15.74568 -14.88705 -14.68288 -14.55515 -14.33098 -13.85504 -13.72473 -13.61844 -13.25962 -12.96922 -12.50803 -12.33664 -12.13803 -11.73484 -11.54281 -11.12456 -11.04780 -10.77047 -10.75473 -10.70320 -10.42175 -10.30114 -10.06150 -9.43054 -9.24608 -8.88583 -8.61731 -7.97322 -7.29800 -6.47262 -4.08899 0.88674 1.52585 2.21376 2.30237 3.25637 3.29334 3.52718 3.65395 4.15527 4.25358 4.28891 4.47013 4.58089 4.64465 4.68528 4.81008 4.82659 4.89149 5.03090 5.11004 5.42119 5.51642 5.57014 5.65656 5.70499 5.77218 5.85600 5.90690 6.01159 6.12903 6.29509 6.49528 6.67243 6.74350 7.06260 7.12251 7.25028 7.45499 7.57644 7.74237 7.97392 8.60871 8.88543 9.54401 10.58520 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.013495 B = 0.006981 C = 0.004664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.417331 B = 4009.991128 C = 6002.426527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.068 3.932 3 Si 0.901 3.099 4 H -0.276 1.276 5 H -0.290 1.290 6 H -0.235 1.235 7 C -0.390 4.390 8 H 0.107 0.893 9 O -0.160 6.160 10 C 0.192 3.808 11 C -0.231 4.231 12 C -0.052 4.052 13 C -0.223 4.223 14 C -0.022 4.022 15 C -0.143 4.143 16 C 0.377 3.623 17 N -0.477 5.477 18 C 0.159 3.841 19 C -0.195 4.195 20 C -0.101 4.101 21 C -0.177 4.177 22 C -0.171 4.171 23 C 0.148 3.852 24 N -0.524 5.524 25 H 0.280 0.720 26 H 0.137 0.863 27 H 0.113 0.887 28 H 0.112 0.888 29 H 0.127 0.873 30 H 0.158 0.842 31 H 0.115 0.885 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.977 1.872 -0.352 16.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.136 4.136 3 Si 0.726 3.274 4 H -0.202 1.202 5 H -0.217 1.217 6 H -0.157 1.157 7 C -0.466 4.466 8 H 0.124 0.876 9 O -0.059 6.059 10 C 0.134 3.866 11 C -0.250 4.250 12 C -0.071 4.071 13 C -0.242 4.242 14 C -0.042 4.042 15 C -0.147 4.147 16 C 0.118 3.882 17 N -0.189 5.189 18 C -0.009 4.009 19 C -0.200 4.200 20 C -0.120 4.120 21 C -0.214 4.214 22 C -0.208 4.208 23 C -0.020 4.020 24 N -0.237 5.237 25 H 0.090 0.910 26 H 0.155 0.845 27 H 0.131 0.869 28 H 0.130 0.870 29 H 0.144 0.856 30 H 0.175 0.825 31 H 0.133 0.867 32 H 0.115 0.885 33 H 0.117 0.883 34 H 0.116 0.884 35 H 0.113 0.887 36 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 15.258 1.435 -0.304 15.328 hybrid contribution 0.507 1.518 -0.062 1.602 sum 15.765 2.954 -0.366 16.043 Atomic orbital electron populations 1.69654 1.05847 1.28791 1.46549 1.24491 0.94939 0.99225 0.94988 0.86227 0.81445 0.80549 0.79197 1.20185 1.21676 1.15742 1.20958 0.77507 0.96673 1.51449 0.87618 1.83845 1.21576 1.24642 1.75844 1.19051 0.90346 0.85922 0.91240 1.21232 1.01234 0.91633 1.10945 1.20963 0.94411 0.96747 0.95008 1.20595 0.93927 0.97364 1.12344 1.20803 0.99349 0.90261 0.93802 1.17131 0.89226 0.89794 1.18557 1.21309 0.86204 0.91453 0.89280 1.68841 1.39547 0.97900 1.12639 1.23064 0.89905 0.97587 0.90378 1.20771 0.96070 0.95617 1.07541 1.20748 0.90157 0.96440 1.04673 1.23049 0.96447 1.03246 0.98640 1.23053 1.02643 1.03079 0.91984 1.22867 0.99975 0.87206 0.91947 1.68354 1.06950 1.32519 1.15927 0.90960 0.84537 0.86929 0.86968 0.85561 0.82494 0.86724 0.88463 0.88339 0.88389 0.88664 0.82461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.96 13.96 55.48 0.77 -24.19 16 2 C 0.07 1.91 5.49 -17.52 -0.10 1.81 16 3 Si 0.90 21.56 28.62 -169.99 -4.86 16.69 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.23 -5.48 6.52 56.52 0.37 -5.11 16 7 C -0.39 -10.87 9.95 30.89 0.31 -10.56 16 8 H 0.11 2.98 5.44 -52.48 -0.29 2.70 16 9 O -0.16 -4.20 6.39 0.49 0.00 -4.19 16 10 C 0.19 4.55 6.65 -38.71 -0.26 4.29 16 11 C -0.23 -4.97 9.16 -39.44 -0.36 -5.33 16 12 C -0.05 -0.94 10.03 -39.55 -0.40 -1.33 16 13 C -0.22 -3.78 10.03 -39.59 -0.40 -4.18 16 14 C -0.02 -0.41 9.56 -39.26 -0.38 -0.79 16 15 C -0.14 -3.09 5.89 -104.74 -0.62 -3.70 16 16 C 0.38 7.93 7.55 -156.90 -1.19 6.75 16 17 N -0.48 -10.33 7.75 -11.16 -0.09 -10.41 16 18 C 0.16 2.80 10.87 -17.23 -0.19 2.62 16 19 C -0.20 -2.83 5.64 -104.28 -0.59 -3.42 16 20 C -0.10 -1.08 6.07 -91.77 -0.56 -1.64 16 21 C -0.18 -1.50 9.88 -26.70 -0.26 -1.76 16 22 C -0.17 -1.53 10.18 -26.69 -0.27 -1.80 16 23 C 0.15 2.19 10.57 -17.24 -0.18 2.00 16 24 N -0.52 -9.51 9.46 -11.16 -0.11 -9.62 16 25 H 0.28 7.44 8.31 -40.82 -0.34 7.10 16 26 H 0.14 3.02 5.64 -52.49 -0.30 2.72 16 27 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 28 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 29 H 0.13 2.10 7.51 -52.49 -0.39 1.70 16 30 H 0.16 2.46 8.06 -52.49 -0.42 2.04 16 31 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.10 0.78 6.25 -51.93 -0.32 0.46 16 33 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.16 1.76 6.16 -52.49 -0.32 1.44 16 LS Contribution 310.48 15.07 4.68 4.68 Total: -1.00 -30.68 310.48 -8.78 -39.46 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -3.75 Total: 4.62 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: -5.43 Total: -17.04 kcal Atomic # 7 Polarization: -44.80 SS G_CDS: 0.58 Total: -44.22 kcal Atomic # 8 Polarization: -4.20 SS G_CDS: 0.00 Total: -4.19 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.86 Total: 16.69 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.68 -8.78 -39.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243585613.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.740 kcal (2) G-P(sol) polarization free energy of solvation -30.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds