Wall clock time and date at job start Tue Mar 31 2020 05:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31545 * 1 3 3 Si 1.86801 * 119.99592 * 2 1 4 4 H 1.48500 * 109.47233 * 270.00312 * 3 2 1 5 5 H 1.48497 * 109.47142 * 30.00532 * 3 2 1 6 6 H 1.48503 * 109.46855 * 150.00192 * 3 2 1 7 7 C 1.38670 * 120.00350 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00093 * 179.97438 * 7 2 1 9 9 O 1.34813 * 119.99796 * 359.97438 * 7 2 1 10 10 C 1.35619 * 117.00028 * 185.06985 * 9 7 2 11 11 C 1.38793 * 120.13814 * 354.39792 * 10 9 7 12 12 C 1.38075 * 120.05233 * 180.02562 * 11 10 9 13 13 C 1.38483 * 120.34297 * 359.97074 * 12 11 10 14 14 C 1.37963 * 120.28557 * 0.02562 * 13 12 11 15 15 C 1.39381 * 119.93981 * 0.02562 * 14 13 12 16 16 C 1.48131 * 120.17080 * 179.97438 * 15 14 13 17 17 C 1.39848 * 120.55965 * 359.74115 * 16 15 14 18 18 C 1.38269 * 118.28521 * 179.78226 * 17 16 15 19 19 C 1.50708 * 120.40018 * 180.23618 * 18 17 16 20 20 C 1.53004 * 117.49609 * 343.88021 * 19 18 17 21 21 C 1.53003 * 60.00099 * 252.50848 * 20 19 18 22 22 N 1.32466 * 119.20021 * 0.49431 * 18 17 16 23 23 C 1.31810 * 121.07676 * 359.73995 * 22 18 17 24 24 N 1.31676 * 121.88419 * 0.02562 * 23 22 18 25 25 H 0.96994 * 120.00296 * 359.97438 * 1 2 3 26 26 H 1.07999 * 119.97440 * 0.02562 * 11 10 9 27 27 H 1.07997 * 119.83242 * 179.70164 * 12 11 10 28 28 H 1.07998 * 119.86268 * 180.02562 * 13 12 11 29 29 H 1.07998 * 120.02921 * 180.02562 * 14 13 12 30 30 H 1.08002 * 120.85936 * 0.02562 * 17 16 15 31 31 H 1.08994 * 115.54703 * 129.58640 * 19 18 17 32 32 H 1.08998 * 117.49959 * 0.02562 * 20 19 18 33 33 H 1.09004 * 117.49365 * 145.02092 * 20 19 18 34 34 H 1.08997 * 117.50048 * 252.51800 * 21 20 19 35 35 H 1.09000 * 117.51425 * 107.47876 * 21 20 19 36 36 H 1.08003 * 119.06188 * 180.02562 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2493 1.6178 0.0000 4 1 2.4968 2.0466 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5469 1.4403 0.7000 7 6 2.0089 -1.2009 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3348 -2.3684 -0.0005 10 6 2.0694 -3.5035 0.1057 11 6 3.4558 -3.4401 0.0913 12 6 4.2020 -4.5969 0.1990 13 6 3.5745 -5.8252 0.3226 14 6 2.1972 -5.9044 0.3386 15 6 1.4324 -4.7443 0.2295 16 6 -0.0467 -4.8235 0.2456 17 6 -0.6914 -6.0588 0.3644 18 6 -2.0739 -6.0777 0.3789 19 6 -2.8174 -7.3819 0.5104 20 6 -2.0354 -8.6705 0.2477 21 6 -3.0702 -8.1831 -0.7685 22 7 -2.7369 -4.9360 0.2707 23 6 -2.1002 -3.7877 0.1551 24 7 -0.7853 -3.7199 0.1412 25 1 -0.4850 0.8400 0.0004 26 1 3.9514 -2.4853 -0.0043 27 1 5.2806 -4.5440 0.1825 28 1 4.1657 -6.7251 0.4067 29 1 1.7122 -6.8645 0.4355 30 1 -0.1240 -6.9741 0.4468 31 1 -3.5874 -7.4084 1.2813 32 1 -0.9830 -8.5749 -0.0197 33 1 -2.2909 -9.5450 0.8461 34 1 -4.0064 -8.7368 -0.8385 35 1 -2.6990 -7.7666 -1.7048 36 1 -2.6733 -2.8763 0.0694 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243586149.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:51 Heat of formation + Delta-G solvation = 81.015188 kcal Electronic energy + Delta-G solvation = -21078.867415 eV Core-core repulsion = 17916.189113 eV Total energy + Delta-G solvation = -3162.678302 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.50408 -38.94128 -37.15381 -36.43786 -33.30325 -32.34459 -31.63794 -29.44481 -28.82214 -25.53215 -24.70864 -24.12868 -22.38354 -21.78900 -21.32608 -20.08777 -18.04641 -17.32049 -16.96649 -16.01079 -15.30926 -15.13930 -14.78146 -14.37092 -14.24914 -14.12232 -13.76963 -13.56368 -13.43478 -12.71043 -12.50883 -11.91671 -11.73111 -11.60155 -11.52235 -11.03042 -10.91490 -10.89550 -10.79887 -10.56275 -10.48345 -10.01865 -9.90750 -9.44861 -9.06465 -8.89101 -8.35156 -8.02686 -7.20389 -6.49277 -4.04383 1.16822 1.60003 2.31690 2.48374 3.09817 3.10832 3.15014 3.70015 3.90948 4.22885 4.35512 4.70621 4.72881 4.80934 4.87516 5.04116 5.11101 5.15926 5.19652 5.40237 5.54479 5.58942 5.63960 5.72826 5.78433 5.93477 5.99414 6.03360 6.13210 6.18292 6.34877 6.59214 6.69256 6.98457 6.99498 7.16964 7.26695 7.30242 7.70854 7.76352 7.91790 8.90714 8.92769 9.65719 10.64537 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.017979 B = 0.005457 C = 0.004237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.985287 B = 5129.736050 C = 6606.526861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.047 3.953 3 Si 0.938 3.062 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.399 4.399 8 H 0.092 0.908 9 O -0.114 6.114 10 C 0.179 3.821 11 C -0.239 4.239 12 C -0.054 4.054 13 C -0.227 4.227 14 C -0.039 4.039 15 C -0.160 4.160 16 C 0.243 3.757 17 C -0.241 4.241 18 C 0.192 3.808 19 C -0.104 4.104 20 C -0.173 4.173 21 C -0.161 4.161 22 N -0.545 5.545 23 C 0.304 3.696 24 N -0.469 5.469 25 H 0.270 0.730 26 H 0.130 0.870 27 H 0.110 0.890 28 H 0.110 0.890 29 H 0.115 0.885 30 H 0.137 0.863 31 H 0.121 0.879 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.370 -12.051 0.386 12.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.161 4.161 3 Si 0.763 3.237 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.192 1.192 7 C -0.475 4.475 8 H 0.109 0.891 9 O -0.011 6.011 10 C 0.119 3.881 11 C -0.258 4.258 12 C -0.073 4.073 13 C -0.247 4.247 14 C -0.059 4.059 15 C -0.163 4.163 16 C 0.100 3.900 17 C -0.264 4.264 18 C 0.047 3.953 19 C -0.122 4.122 20 C -0.211 4.211 21 C -0.199 4.199 22 N -0.261 5.261 23 C 0.016 3.984 24 N -0.183 5.183 25 H 0.080 0.920 26 H 0.148 0.852 27 H 0.128 0.872 28 H 0.128 0.872 29 H 0.133 0.867 30 H 0.155 0.845 31 H 0.139 0.861 32 H 0.118 0.882 33 H 0.119 0.881 34 H 0.118 0.882 35 H 0.113 0.887 36 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -1.395 -10.904 0.284 10.997 hybrid contribution 1.027 0.182 0.091 1.047 sum -0.367 -10.722 0.375 10.735 Atomic orbital electron populations 1.70099 1.05855 1.27572 1.42695 1.25306 0.95810 0.98760 0.96237 0.85761 0.79068 0.80140 0.78765 1.19829 1.20172 1.19155 1.21513 0.91927 0.81371 1.52728 0.89081 1.84235 1.33059 1.10659 1.73123 1.19343 0.89862 0.87694 0.91214 1.21169 0.93519 0.99265 1.11822 1.20884 0.98631 0.92353 0.95453 1.20458 0.93882 0.97152 1.13168 1.20694 0.93593 0.95746 0.95854 1.17483 0.88812 0.91939 1.18058 1.20165 0.93607 0.87942 0.88299 1.22478 0.95619 0.99759 1.08524 1.20394 0.90110 0.92697 0.92086 1.20727 1.02238 0.87789 1.01482 1.23078 0.98138 0.96748 1.03107 1.22940 1.00715 1.02530 0.93711 1.68072 1.42309 0.98840 1.16873 1.24985 0.88277 0.94867 0.90261 1.68926 1.06933 1.30296 1.12121 0.91992 0.85189 0.87235 0.87209 0.86724 0.84518 0.86106 0.88185 0.88105 0.88236 0.88708 0.79182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.30 13.67 55.48 0.76 -22.54 16 2 C 0.05 1.24 5.49 -17.51 -0.10 1.14 16 3 Si 0.94 19.89 29.55 -169.99 -5.02 14.87 16 4 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 6 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 7 C -0.40 -10.82 9.49 30.89 0.29 -10.52 16 8 H 0.09 2.28 5.21 -52.49 -0.27 2.01 16 9 O -0.11 -3.15 7.65 0.50 0.00 -3.15 16 10 C 0.18 4.31 6.65 -38.70 -0.26 4.06 16 11 C -0.24 -5.06 9.16 -39.44 -0.36 -5.42 16 12 C -0.05 -0.96 10.03 -39.55 -0.40 -1.36 16 13 C -0.23 -3.77 10.03 -39.59 -0.40 -4.17 16 14 C -0.04 -0.69 9.44 -39.26 -0.37 -1.07 16 15 C -0.16 -3.46 5.89 -104.74 -0.62 -4.08 16 16 C 0.24 5.24 6.76 -82.61 -0.56 4.68 16 17 C -0.24 -4.25 8.79 -38.97 -0.34 -4.60 16 18 C 0.19 3.28 6.49 -82.30 -0.53 2.74 16 19 C -0.10 -1.33 6.25 -91.76 -0.57 -1.90 16 20 C -0.17 -1.74 9.83 -26.73 -0.26 -2.00 16 21 C -0.16 -1.74 10.23 -26.73 -0.27 -2.01 16 22 N -0.54 -10.42 10.36 -10.87 -0.11 -10.53 16 23 C 0.30 6.38 12.28 -92.24 -1.13 5.24 16 24 N -0.47 -11.15 8.33 -11.13 -0.09 -11.24 16 25 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 26 H 0.13 2.72 5.64 -52.49 -0.30 2.43 16 27 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 28 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 29 H 0.11 1.64 6.28 -52.49 -0.33 1.32 16 30 H 0.14 1.97 4.65 -52.49 -0.24 1.73 16 31 H 0.12 1.44 8.14 -51.93 -0.42 1.02 16 32 H 0.10 1.00 6.46 -51.93 -0.34 0.67 16 33 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.19 3.66 8.06 -52.48 -0.42 3.24 16 LS Contribution 310.98 15.07 4.69 4.69 Total: -1.00 -30.87 310.98 -9.23 -40.11 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -3.57 Total: 7.08 kcal Atomic # 6 Polarization: -13.39 SS G_CDS: -5.88 Total: -19.27 kcal Atomic # 7 Polarization: -44.87 SS G_CDS: 0.55 Total: -44.32 kcal Atomic # 8 Polarization: -3.15 SS G_CDS: 0.00 Total: -3.15 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.87 -9.23 -40.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243586149.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.122 kcal (2) G-P(sol) polarization free energy of solvation -30.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds