Wall clock time and date at job start Tue Mar 31 2020 05:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31754 * 1 3 3 O 1.35639 * 120.00521 * 2 1 4 4 C 1.35847 * 118.00289 * 174.39382 * 3 2 1 5 5 C 1.38873 * 119.93374 * 354.31773 * 4 3 2 6 6 C 1.37882 * 120.07020 * 180.23537 * 5 4 3 7 7 C 1.39446 * 119.92973 * 359.50765 * 6 5 4 8 8 C 1.48257 * 120.06729 * 180.25244 * 7 6 5 9 9 C 1.39307 * 120.15521 * 129.96194 * 8 7 6 10 10 C 1.38019 * 119.93647 * 179.70232 * 9 8 7 11 11 C 1.38445 * 120.27105 * 0.59747 * 10 9 8 12 12 C 1.38120 * 120.33018 * 359.67598 * 11 10 9 13 13 C 1.38751 * 120.04671 * 0.02562 * 12 11 10 14 14 O 1.35678 * 120.13070 * 179.97438 * 13 12 11 15 15 C 1.34809 * 117.00287 * 5.88416 * 14 13 12 16 16 H 1.08004 * 119.99917 * 5.32431 * 15 14 13 17 17 C 1.38630 * 120.00338 * 185.32228 * 15 14 13 18 18 N 1.31567 * 119.99820 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 120.00294 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47208 * 89.99943 * 19 17 15 21 21 H 1.48507 * 109.46983 * 210.00081 * 19 17 15 22 22 H 1.48497 * 109.46789 * 329.99534 * 19 17 15 23 23 C 1.39440 * 119.86644 * 0.49270 * 7 6 5 24 24 C 1.37889 * 119.92869 * 359.74177 * 23 7 6 25 25 H 1.08005 * 119.99605 * 359.97438 * 1 2 3 26 26 H 1.07994 * 120.00385 * 179.97438 * 1 2 3 27 27 H 1.08005 * 119.99605 * 180.02562 * 2 1 3 28 28 H 1.07994 * 119.96548 * 359.95159 * 5 4 3 29 29 H 1.07997 * 120.03816 * 179.72122 * 6 5 4 30 30 H 1.07995 * 120.03168 * 359.97415 * 9 8 7 31 31 H 1.07998 * 119.86248 * 180.31907 * 10 9 8 32 32 H 1.08002 * 119.83423 * 179.70415 * 11 10 9 33 33 H 1.08001 * 119.97902 * 180.02562 * 12 11 10 34 34 H 0.97006 * 119.99964 * 179.97438 * 18 17 15 35 35 H 1.07998 * 120.04014 * 179.77077 * 23 7 6 36 36 H 1.08003 * 119.96327 * 180.02562 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3175 0.0000 0.0000 3 8 1.9958 1.1746 0.0000 4 6 3.3485 1.1300 0.1172 5 6 3.9843 -0.0824 0.3505 6 6 5.3566 -0.1302 0.4747 7 6 6.1072 1.0390 0.3556 8 6 7.5834 0.9903 0.4831 9 6 8.3893 1.5915 -0.4811 10 6 9.7631 1.5487 -0.3548 11 6 10.3451 0.8996 0.7207 12 6 9.5568 0.2949 1.6802 13 6 8.1743 0.3351 1.5698 14 8 7.3983 -0.2588 2.5110 15 6 8.0260 -0.7653 3.5912 16 1 9.0875 -0.6129 3.7198 17 6 7.3091 -1.4818 4.5370 18 7 6.0162 -1.6679 4.3802 19 14 8.1789 -2.1830 6.0342 20 1 8.1537 -1.1853 7.1338 21 1 7.4871 -3.4215 6.4736 22 1 9.5870 -2.4999 5.6853 23 6 5.4660 2.2549 0.1214 24 6 4.0928 2.2969 0.0029 25 1 -0.5400 0.9354 0.0004 26 1 -0.5400 -0.9352 -0.0004 27 1 1.8575 -0.9354 -0.0004 28 1 3.4028 -0.9881 0.4392 29 1 5.8501 -1.0727 0.6606 30 1 7.9395 2.0943 -1.3244 31 1 10.3866 2.0196 -1.1003 32 1 11.4209 0.8663 0.8101 33 1 10.0168 -0.2095 2.5171 34 1 5.5146 -2.1696 5.0418 35 1 6.0442 3.1627 0.0324 36 1 3.5956 3.2383 -0.1789 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243586274.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:38 Heat of formation + Delta-G solvation = 16.674445 kcal Electronic energy + Delta-G solvation = -20841.335767 eV Core-core repulsion = 17643.574690 eV Total energy + Delta-G solvation = -3197.761077 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.104 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.29121 -39.20843 -37.40161 -36.28666 -32.49531 -32.23793 -31.11924 -30.53122 -29.08420 -27.61837 -25.40878 -23.40991 -22.67060 -21.59452 -20.74170 -19.94016 -18.52266 -18.00259 -17.12892 -15.78218 -15.50327 -15.18770 -14.67592 -14.55439 -14.36152 -14.00746 -13.79294 -13.50189 -13.39700 -12.97088 -12.91045 -12.62557 -11.86794 -11.76505 -11.68467 -11.63678 -11.33538 -10.93798 -10.76670 -10.61927 -10.49503 -10.34472 -9.44017 -9.29509 -8.89224 -8.55938 -8.33110 -7.62622 -7.06589 -6.50500 -4.08586 1.44737 1.83384 2.15418 2.32809 2.54544 3.09651 3.10266 3.14669 3.31204 3.91505 4.19377 4.54990 4.78634 5.04937 5.15904 5.26958 5.29383 5.34057 5.61319 5.63797 5.77125 5.80373 5.85134 6.01320 6.04008 6.22855 6.25868 6.44327 6.48386 6.55890 6.64954 6.75406 6.92136 6.97021 7.08809 7.15985 7.29316 7.32417 7.40572 7.75498 7.84603 7.93469 8.94793 9.63305 10.66263 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.012284 B = 0.006030 C = 0.004185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2278.895939 B = 4642.633704 C = 6688.744260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.028 3.972 3 O -0.257 6.257 4 C 0.096 3.904 5 C -0.192 4.192 6 C -0.040 4.040 7 C -0.036 4.036 8 C -0.133 4.133 9 C -0.061 4.061 10 C -0.215 4.215 11 C -0.071 4.071 12 C -0.233 4.233 13 C 0.163 3.837 14 O -0.165 6.165 15 C -0.394 4.394 16 H 0.091 0.909 17 C 0.042 3.958 18 N -0.856 5.856 19 Si 0.939 3.061 20 H -0.273 1.273 21 H -0.277 1.277 22 H -0.268 1.268 23 C -0.082 4.082 24 C -0.146 4.146 25 H 0.103 0.897 26 H 0.124 0.876 27 H 0.130 0.870 28 H 0.127 0.873 29 H 0.131 0.869 30 H 0.114 0.886 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.128 0.872 34 H 0.270 0.730 35 H 0.127 0.873 36 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.273 3.276 -7.858 8.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 C -0.033 4.033 3 O -0.168 6.168 4 C 0.053 3.947 5 C -0.210 4.210 6 C -0.058 4.058 7 C -0.037 4.037 8 C -0.134 4.134 9 C -0.080 4.080 10 C -0.234 4.234 11 C -0.089 4.089 12 C -0.252 4.252 13 C 0.108 3.892 14 O -0.067 6.067 15 C -0.470 4.470 16 H 0.109 0.891 17 C -0.163 4.163 18 N -0.490 5.490 19 Si 0.764 3.236 20 H -0.199 1.199 21 H -0.203 1.203 22 H -0.192 1.192 23 C -0.100 4.100 24 C -0.164 4.164 25 H 0.121 0.879 26 H 0.142 0.858 27 H 0.147 0.853 28 H 0.144 0.856 29 H 0.149 0.851 30 H 0.132 0.868 31 H 0.125 0.875 32 H 0.125 0.875 33 H 0.146 0.854 34 H 0.080 0.920 35 H 0.145 0.855 36 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.821 3.294 -7.712 8.848 hybrid contribution 0.594 -0.631 0.963 1.296 sum -2.228 2.664 -6.749 7.590 Atomic orbital electron populations 1.23440 0.93285 1.03060 1.09403 1.22622 0.93399 0.88311 0.98999 1.84277 1.17813 1.31076 1.83586 1.18997 0.80501 0.94902 1.00295 1.21080 0.95910 0.96716 1.07340 1.21070 0.92274 0.98788 0.93694 1.18606 0.92265 0.92783 1.00017 1.17819 0.91148 1.07211 0.97210 1.20725 0.93166 0.97326 0.96736 1.20529 0.94391 1.07724 1.00715 1.20824 0.98489 0.95865 0.93745 1.21131 0.93285 1.08055 1.02741 1.19346 0.89771 0.91309 0.88762 1.83994 1.33626 1.62577 1.26510 1.21324 0.94566 1.34005 0.97123 0.89133 1.25256 0.95719 0.96425 0.98866 1.70043 1.06187 1.37568 1.35162 0.85742 0.79013 0.78588 0.80294 1.19873 1.20261 1.19203 1.20967 0.92824 0.97335 0.98907 1.20178 0.93194 0.96140 1.06904 0.87865 0.85835 0.85297 0.85567 0.85117 0.86842 0.87476 0.87460 0.85391 0.92018 0.85483 0.85604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -2.98 14.63 28.85 0.42 -2.56 16 2 C 0.03 0.38 9.95 28.85 0.29 0.67 16 3 O -0.26 -4.21 10.00 -2.64 -0.03 -4.24 16 4 C 0.10 1.68 6.66 -39.11 -0.26 1.42 16 5 C -0.19 -3.51 9.15 -39.48 -0.36 -3.87 16 6 C -0.04 -0.82 8.77 -39.26 -0.34 -1.16 16 7 C -0.04 -0.73 5.28 -104.88 -0.55 -1.28 16 8 C -0.13 -2.74 5.49 -104.73 -0.57 -3.32 16 9 C -0.06 -1.08 9.51 -39.26 -0.37 -1.46 16 10 C -0.21 -3.61 10.03 -39.59 -0.40 -4.01 16 11 C -0.07 -1.27 10.03 -39.55 -0.40 -1.67 16 12 C -0.23 -4.93 9.13 -39.44 -0.36 -5.29 16 13 C 0.16 3.81 6.55 -38.74 -0.25 3.56 16 14 O -0.16 -4.45 8.08 0.33 0.00 -4.45 16 15 C -0.39 -10.62 9.44 30.88 0.29 -10.33 16 16 H 0.09 2.27 5.30 -52.48 -0.28 2.00 16 17 C 0.04 1.13 5.49 -17.52 -0.10 1.03 16 18 N -0.86 -24.16 13.67 55.48 0.76 -23.40 16 19 Si 0.94 20.06 29.55 -169.99 -5.02 15.04 16 20 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 21 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 22 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 23 C -0.08 -1.42 9.51 -39.26 -0.37 -1.80 16 24 C -0.15 -2.41 9.97 -39.47 -0.39 -2.80 16 25 H 0.10 1.19 8.06 -52.48 -0.42 0.76 16 26 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 27 H 0.13 1.62 5.66 -52.48 -0.30 1.33 16 28 H 0.13 2.04 5.77 -52.49 -0.30 1.74 16 29 H 0.13 2.87 7.66 -52.49 -0.40 2.47 16 30 H 0.11 1.69 8.04 -52.49 -0.42 1.27 16 31 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 32 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 33 H 0.13 2.71 5.71 -52.49 -0.30 2.41 16 34 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 35 H 0.13 1.90 8.04 -52.49 -0.42 1.48 16 36 H 0.13 1.76 8.06 -52.48 -0.42 1.34 16 LS Contribution 317.03 15.07 4.78 4.78 Total: -1.00 -29.61 317.03 -6.92 -36.53 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -3.67 Total: 8.61 kcal Atomic # 6 Polarization: -29.13 SS G_CDS: -3.74 Total: -32.87 kcal Atomic # 7 Polarization: -24.16 SS G_CDS: 0.76 Total: -23.40 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: -0.02 Total: -8.69 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.61 -6.92 -36.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243586274.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.209 kcal (2) G-P(sol) polarization free energy of solvation -29.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds