Wall clock time and date at job start Tue Mar 31 2020 05:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31550 * 1 3 3 Si 1.86799 * 120.00119 * 2 1 4 4 H 1.48501 * 109.47311 * 239.99922 * 3 2 1 5 5 H 1.48497 * 109.47100 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47117 * 120.00079 * 3 2 1 7 7 C 1.38668 * 120.00039 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99923 * 180.02562 * 7 2 1 9 9 O 1.34807 * 119.99845 * 0.02562 * 7 2 1 10 10 C 1.35678 * 117.00213 * 185.05733 * 9 7 2 11 11 C 1.39024 * 119.94369 * 354.45439 * 10 9 7 12 12 C 1.37813 * 120.05623 * 179.72333 * 11 10 9 13 13 C 1.39475 * 119.94121 * 0.25191 * 12 11 10 14 14 C 1.48255 * 120.04943 * 179.97438 * 13 12 11 15 15 C 1.39774 * 120.18328 * 179.72145 * 14 13 12 16 16 C 1.38623 * 117.88323 * 179.75987 * 15 14 13 17 17 C 1.38750 * 118.07063 * 0.52817 * 16 15 14 18 18 C 1.50701 * 119.96054 * 179.72571 * 17 16 15 19 19 C 1.53004 * 117.50188 * 343.60172 * 18 17 16 20 20 C 1.53002 * 59.99967 * 252.50957 * 19 18 17 21 21 N 1.31938 * 120.08001 * 359.70532 * 17 16 15 22 22 N 1.28350 * 122.30891 * 0.02562 * 21 17 16 23 23 C 1.39465 * 119.89536 * 359.97438 * 13 12 11 24 24 C 1.37812 * 119.94525 * 0.02562 * 23 13 12 25 25 H 0.96998 * 119.99653 * 0.02562 * 1 2 3 26 26 H 1.08000 * 119.96857 * 359.97438 * 11 10 9 27 27 H 1.07989 * 120.03003 * 180.26983 * 12 11 10 28 28 H 1.07995 * 121.05606 * 0.02761 * 15 14 13 29 29 H 1.08005 * 120.96235 * 180.25727 * 16 15 14 30 30 H 1.09005 * 115.55230 * 129.30341 * 18 17 16 31 31 H 1.09004 * 117.49521 * 0.02562 * 19 18 17 32 32 H 1.09002 * 117.50170 * 145.01599 * 19 18 17 33 33 H 1.09000 * 117.49374 * 252.50983 * 20 19 18 34 34 H 1.09000 * 117.52085 * 107.47825 * 20 19 18 35 35 H 1.07995 * 120.02647 * 179.97438 * 23 13 12 36 36 H 1.08002 * 119.97349 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.1033 1.6964 -1.2125 5 1 1.2846 2.7464 -0.0006 6 1 3.1033 1.6963 1.2125 7 6 2.0088 -1.2009 -0.0005 8 1 3.0888 -1.2009 -0.0001 9 8 1.3348 -2.3683 -0.0016 10 6 2.0696 -3.5040 0.1045 11 6 3.4581 -3.4359 0.0916 12 6 4.2067 -4.5874 0.2050 13 6 3.5701 -5.8223 0.3274 14 6 4.3731 -7.0626 0.4489 15 6 3.7381 -8.3011 0.5776 16 6 4.5351 -9.4305 0.6827 17 6 5.9122 -9.2618 0.6651 18 6 6.8188 -10.4598 0.7828 19 6 6.2041 -11.7632 1.2970 20 6 7.1506 -10.9590 2.1905 21 7 6.4289 -8.0537 0.5450 22 7 5.6994 -7.0027 0.4417 23 6 2.1771 -5.8885 0.3353 24 6 1.4329 -4.7342 0.2217 25 1 -0.4849 0.8401 -0.0004 26 1 3.9504 -2.4793 -0.0032 27 1 5.2852 -4.5335 0.1993 28 1 2.6609 -8.3762 0.5902 29 1 4.0968 -10.4128 0.7800 30 1 7.5987 -10.5355 0.0250 31 1 5.1438 -11.7542 1.5497 32 1 6.5794 -12.6966 0.8775 33 1 8.1488 -11.3634 2.3587 34 1 6.7136 -10.4207 3.0315 35 1 1.6820 -6.8437 0.4296 36 1 0.3541 -4.7849 0.2282 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243586659.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:41 Heat of formation + Delta-G solvation = 78.587274 kcal Electronic energy + Delta-G solvation = -19984.356691 eV Core-core repulsion = 16821.573106 eV Total energy + Delta-G solvation = -3162.783585 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.95697 -39.11312 -37.60747 -36.58819 -33.19191 -32.60429 -32.06513 -30.34919 -28.62792 -25.78453 -24.79894 -24.50320 -22.62167 -21.93384 -21.47392 -20.76241 -18.17975 -17.48806 -17.29390 -16.72359 -16.03157 -15.27906 -14.77787 -14.56759 -14.44789 -14.23053 -13.91916 -13.77677 -13.18559 -12.86983 -12.79408 -12.40472 -11.83406 -11.82715 -11.76949 -11.43883 -11.16667 -10.93428 -10.90414 -10.80269 -10.58981 -10.54375 -10.14441 -9.60309 -9.56239 -9.31375 -8.88802 -8.35302 -7.22601 -6.62869 -4.18160 0.74254 0.93052 2.13221 2.27807 3.06496 3.07440 3.10253 3.39041 3.73803 3.84624 3.95838 4.43752 4.49892 4.52146 4.59761 4.62661 4.82148 4.89143 4.94283 5.02213 5.14345 5.29473 5.35908 5.51472 5.61042 5.64355 5.71373 5.76458 5.85322 6.00306 6.11733 6.27573 6.33772 6.50107 6.78532 6.90295 7.08514 7.24322 7.28239 7.62612 7.82621 8.81969 8.93509 9.48025 10.53678 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.046672 B = 0.002890 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.784382 B = 9684.758194 C =10178.722916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.042 3.958 3 Si 0.944 3.056 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.267 1.267 7 C -0.392 4.392 8 H 0.097 0.903 9 O -0.163 6.163 10 C 0.168 3.832 11 C -0.242 4.242 12 C -0.019 4.019 13 C -0.170 4.170 14 C 0.150 3.850 15 C -0.127 4.127 16 C -0.111 4.111 17 C 0.065 3.935 18 C -0.098 4.098 19 C -0.174 4.174 20 C -0.162 4.162 21 N -0.230 5.230 22 N -0.252 5.252 23 C -0.045 4.045 24 C -0.196 4.196 25 H 0.274 0.726 26 H 0.133 0.867 27 H 0.123 0.877 28 H 0.149 0.851 29 H 0.145 0.855 30 H 0.123 0.877 31 H 0.098 0.902 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.095 0.905 35 H 0.116 0.884 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.725 -18.142 2.113 19.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.164 4.164 3 Si 0.768 3.232 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.192 1.192 7 C -0.468 4.468 8 H 0.115 0.885 9 O -0.064 6.064 10 C 0.111 3.889 11 C -0.262 4.262 12 C -0.038 4.038 13 C -0.174 4.174 14 C 0.010 3.990 15 C -0.156 4.156 16 C -0.140 4.140 17 C -0.080 4.080 18 C -0.118 4.118 19 C -0.212 4.212 20 C -0.200 4.200 21 N -0.071 5.071 22 N -0.095 5.095 23 C -0.065 4.065 24 C -0.215 4.215 25 H 0.084 0.916 26 H 0.150 0.850 27 H 0.141 0.859 28 H 0.167 0.833 29 H 0.162 0.838 30 H 0.141 0.859 31 H 0.116 0.884 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.113 0.887 35 H 0.134 0.866 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 8.635 -16.929 1.989 19.108 hybrid contribution -0.884 -0.109 0.058 0.893 sum 7.751 -17.038 2.046 18.830 Atomic orbital electron populations 1.70023 1.06112 1.28328 1.44165 1.25384 0.95908 0.99133 0.96021 0.85717 0.78758 0.79202 0.79489 1.19232 1.20111 1.19222 1.21432 0.92126 0.80564 1.52657 0.88545 1.83934 1.34879 1.11749 1.75801 1.19549 0.90367 0.87897 0.91081 1.21149 0.93562 0.99155 1.12298 1.20914 0.99431 0.90775 0.92694 1.17731 0.91885 0.90279 1.17463 1.21478 0.91880 0.93695 0.91994 1.22392 1.02092 0.92192 0.98937 1.22109 0.93861 1.00083 0.97914 1.21780 0.92298 0.94516 0.99446 1.20607 1.01020 0.90820 0.99355 1.23089 0.99560 0.94670 1.03859 1.22980 1.00893 1.02875 0.93234 1.72804 1.31151 0.95413 1.07776 1.73263 1.04187 1.20425 1.11645 1.20627 0.92042 0.97103 0.96687 1.20087 0.99712 0.89959 1.11784 0.91584 0.84979 0.85902 0.83344 0.83773 0.85921 0.88368 0.87931 0.88010 0.88669 0.86592 0.85907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.01 13.67 55.48 0.76 -23.25 16 2 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 3 Si 0.94 19.75 29.55 -169.99 -5.02 14.73 16 4 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 5 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 6 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 7 C -0.39 -10.52 9.48 30.89 0.29 -10.22 16 8 H 0.10 2.38 5.19 -52.49 -0.27 2.11 16 9 O -0.16 -4.44 9.75 0.34 0.00 -4.44 16 10 C 0.17 3.89 6.65 -39.00 -0.26 3.63 16 11 C -0.24 -5.19 9.15 -39.45 -0.36 -5.55 16 12 C -0.02 -0.37 9.57 -39.28 -0.38 -0.74 16 13 C -0.17 -3.08 5.88 -104.86 -0.62 -3.69 16 14 C 0.15 2.49 6.81 -82.77 -0.56 1.93 16 15 C -0.13 -1.66 9.55 -38.87 -0.37 -2.03 16 16 C -0.11 -1.27 9.43 -39.25 -0.37 -1.64 16 17 C 0.06 0.84 6.54 -82.36 -0.54 0.30 16 18 C -0.10 -0.94 6.23 -91.77 -0.57 -1.51 16 19 C -0.17 -1.19 9.81 -26.73 -0.26 -1.45 16 20 C -0.16 -1.30 10.23 -26.73 -0.27 -1.57 16 21 N -0.23 -3.78 11.42 33.62 0.38 -3.40 16 22 N -0.25 -4.53 10.62 33.36 0.35 -4.17 16 23 C -0.05 -0.77 9.42 -39.28 -0.37 -1.14 16 24 C -0.20 -3.90 9.98 -39.45 -0.39 -4.29 16 25 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 26 H 0.13 2.80 5.62 -52.49 -0.30 2.50 16 27 H 0.12 2.25 7.55 -52.49 -0.40 1.86 16 28 H 0.15 1.52 6.29 -52.49 -0.33 1.19 16 29 H 0.14 1.12 6.35 -52.48 -0.33 0.79 16 30 H 0.12 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.10 0.60 6.43 -51.93 -0.33 0.27 16 32 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.12 1.53 6.24 -52.49 -0.33 1.20 16 36 H 0.12 2.30 8.06 -52.49 -0.42 1.87 16 LS Contribution 313.20 15.07 4.72 4.72 Total: -1.00 -30.66 313.20 -7.47 -38.13 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -3.54 Total: 4.66 kcal Atomic # 6 Polarization: -21.85 SS G_CDS: -5.13 Total: -26.98 kcal Atomic # 7 Polarization: -32.32 SS G_CDS: 1.50 Total: -30.82 kcal Atomic # 8 Polarization: -4.44 SS G_CDS: 0.00 Total: -4.44 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.66 -7.47 -38.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243586659.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.715 kcal (2) G-P(sol) polarization free energy of solvation -30.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds