Wall clock time and date at job start Tue Mar 31 2020 05:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31551 * 1 3 3 Si 1.86803 * 119.99767 * 2 1 4 4 H 1.48506 * 109.47100 * 269.99803 * 3 2 1 5 5 H 1.48505 * 109.46892 * 29.99620 * 3 2 1 6 6 H 1.48500 * 109.47032 * 149.99625 * 3 2 1 7 7 C 1.38656 * 120.00492 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99558 * 0.02562 * 7 2 1 9 9 O 1.34814 * 120.00337 * 180.02562 * 7 2 1 10 10 C 1.35680 * 117.00199 * 185.05728 * 9 7 2 11 11 C 1.39020 * 119.94284 * 354.45247 * 10 9 7 12 12 C 1.37813 * 120.04883 * 180.02562 * 11 10 9 13 13 C 1.39465 * 119.94712 * 359.97438 * 12 11 10 14 14 C 1.48277 * 120.05024 * 180.02562 * 13 12 11 15 15 N 1.32904 * 119.76250 * 324.99541 * 14 13 12 16 16 C 1.31856 * 121.54006 * 179.72933 * 15 14 13 17 17 C 1.37843 * 121.19485 * 359.97438 * 16 15 14 18 18 C 1.40077 * 119.37666 * 0.02562 * 17 16 15 19 19 C 1.38799 * 117.79576 * 0.02562 * 18 17 16 20 20 C 1.51037 * 108.45882 * 179.97438 * 19 18 17 21 21 C 1.53825 * 104.44556 * 359.97438 * 20 19 18 22 22 N 1.38799 * 130.37771 * 179.97438 * 18 17 16 23 23 C 1.39464 * 119.89432 * 0.27746 * 13 12 11 24 24 C 1.37813 * 119.94242 * 359.44479 * 23 13 12 25 25 H 0.97001 * 120.00085 * 0.02562 * 1 2 3 26 26 H 1.07996 * 119.97263 * 0.02562 * 11 10 9 27 27 H 1.07999 * 120.02621 * 180.02562 * 12 11 10 28 28 H 1.07999 * 119.39795 * 180.02562 * 16 15 14 29 29 H 1.07995 * 120.31232 * 180.02562 * 17 16 15 30 30 H 1.09004 * 110.43965 * 241.25380 * 20 19 18 31 31 H 1.08998 * 110.54289 * 118.79608 * 20 19 18 32 32 H 1.08997 * 110.30728 * 241.07610 * 21 20 19 33 33 H 1.08999 * 110.30335 * 118.92134 * 21 20 19 34 34 H 0.96997 * 124.94722 * 0.07635 * 22 18 17 35 35 H 1.07996 * 120.02633 * 179.72828 * 23 13 12 36 36 H 1.08001 * 119.97326 * 180.29748 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0465 -1.4001 5 1 1.4468 2.6527 0.7000 6 1 3.5470 1.4403 0.7001 7 6 2.0089 -1.2007 0.0005 8 1 1.4689 -2.1361 0.0005 9 8 3.3570 -1.2007 0.0011 10 6 3.9731 -2.4049 -0.1050 11 6 3.2199 -3.5733 -0.0915 12 6 3.8435 -4.7976 -0.1986 13 6 5.2311 -4.8638 -0.3210 14 6 5.9044 -6.1798 -0.4369 15 7 5.4226 -7.2278 0.2234 16 6 5.9902 -8.4151 0.1415 17 6 7.1103 -8.6189 -0.6357 18 6 7.6553 -7.5447 -1.3506 19 6 7.0314 -6.3098 -1.2390 20 6 7.7864 -5.3142 -2.0874 21 6 8.9330 -6.1304 -2.7081 22 7 8.7598 -7.4909 -2.1895 23 6 5.9850 -3.6905 -0.3290 24 6 5.3564 -2.4683 -0.2274 25 1 -0.4850 0.8400 -0.0004 26 1 2.1453 -3.5214 0.0029 27 1 3.2579 -5.7050 -0.1885 28 1 5.5693 -9.2431 0.6926 29 1 7.5634 -9.5975 -0.6928 30 1 8.1838 -4.5102 -1.4679 31 1 7.1414 -4.9093 -2.8672 32 1 9.8964 -5.7265 -2.3970 33 1 8.8541 -6.1275 -3.7952 34 1 9.3333 -8.2437 -2.4020 35 1 7.0601 -3.7395 -0.4193 36 1 5.9393 -1.5592 -0.2384 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243586900.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:36 Heat of formation + Delta-G solvation = 45.694631 kcal Electronic energy + Delta-G solvation = -20657.702556 eV Core-core repulsion = 17493.492640 eV Total energy + Delta-G solvation = -3164.209917 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.79066 -39.09052 -37.38101 -36.49825 -32.71327 -32.23567 -30.67239 -30.13237 -29.59712 -27.99046 -25.38587 -23.58132 -22.77863 -21.71040 -21.54514 -20.59775 -18.12634 -17.67002 -17.17922 -16.39131 -15.78966 -15.21458 -14.87327 -14.67476 -14.38900 -13.91807 -13.86321 -13.82022 -13.36526 -12.98053 -12.82030 -12.36149 -12.28809 -12.21922 -12.00004 -11.75045 -11.44426 -10.94608 -10.85570 -10.77643 -10.66438 -10.17752 -9.45625 -9.26568 -9.05207 -8.70974 -8.28240 -7.78398 -7.21083 -6.46311 -4.11603 1.11404 1.61254 2.16294 2.36144 3.15808 3.20009 3.23486 3.37863 4.00271 4.20053 4.45336 4.50722 4.61848 4.66086 4.80395 4.93161 5.04569 5.08150 5.18724 5.35172 5.40155 5.54238 5.67138 5.79424 5.85351 5.93350 5.96296 6.13945 6.19750 6.30152 6.47201 6.56833 6.81037 6.88486 7.11757 7.20851 7.30768 7.55549 7.57082 7.77264 7.98947 8.36200 8.88185 9.49569 10.60768 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.032131 B = 0.003723 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.235573 B = 7518.937392 C = 8196.505448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.259 1.259 7 C -0.390 4.390 8 H 0.109 0.891 9 O -0.211 6.211 10 C 0.170 3.830 11 C -0.228 4.228 12 C -0.028 4.028 13 C -0.148 4.148 14 C 0.250 3.750 15 N -0.516 5.516 16 C 0.139 3.861 17 C -0.255 4.255 18 C 0.231 3.769 19 C -0.224 4.224 20 C -0.078 4.078 21 C 0.116 3.884 22 N -0.738 5.738 23 C -0.054 4.054 24 C -0.197 4.197 25 H 0.281 0.719 26 H 0.136 0.864 27 H 0.118 0.882 28 H 0.153 0.847 29 H 0.123 0.877 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.411 0.589 35 H 0.118 0.882 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.830 -12.942 -4.373 21.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.183 1.183 7 C -0.465 4.465 8 H 0.126 0.874 9 O -0.115 6.115 10 C 0.117 3.883 11 C -0.247 4.247 12 C -0.047 4.047 13 C -0.150 4.150 14 C 0.116 3.884 15 N -0.227 5.227 16 C -0.019 4.019 17 C -0.281 4.281 18 C 0.119 3.881 19 C -0.231 4.231 20 C -0.116 4.116 21 C -0.009 4.009 22 N -0.371 5.371 23 C -0.073 4.073 24 C -0.216 4.216 25 H 0.091 0.909 26 H 0.154 0.846 27 H 0.136 0.864 28 H 0.170 0.830 29 H 0.141 0.859 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.248 0.752 35 H 0.136 0.864 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 16.034 -12.347 -3.921 20.613 hybrid contribution 1.156 0.020 -0.622 1.313 sum 17.190 -12.327 -4.544 21.635 Atomic orbital electron populations 1.69643 1.05621 1.28650 1.47260 1.24492 0.95040 0.98910 0.95514 0.86178 0.80379 0.81331 0.79019 1.19802 1.20709 1.18267 1.20830 0.76797 0.96802 1.52090 0.87365 1.83541 1.22769 1.25993 1.79168 1.19256 0.91712 0.85415 0.91954 1.21247 1.01304 0.91635 1.10525 1.20857 0.93043 0.96911 0.93853 1.17992 0.93253 0.89592 1.14143 1.19134 0.88641 0.92133 0.88520 1.68038 1.32432 0.99077 1.23202 1.22346 0.91047 0.94541 0.93964 1.21234 1.02398 0.98307 1.06142 1.18346 0.86849 0.94170 0.88717 1.20618 1.00910 0.95215 1.06361 1.21051 0.95196 0.96906 0.98411 1.21913 0.98933 0.81644 0.98380 1.44624 1.30064 1.11405 1.51006 1.20727 0.98464 0.90797 0.97278 1.20085 0.91871 0.97659 1.12023 0.90918 0.84634 0.86449 0.83012 0.85924 0.89482 0.89360 0.91398 0.91394 0.75160 0.86426 0.86203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.97 13.96 55.48 0.77 -24.19 16 2 C 0.06 1.78 5.49 -17.52 -0.10 1.69 16 3 Si 0.91 21.28 28.62 -169.99 -4.86 16.41 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.26 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.39 -10.85 9.94 30.89 0.31 -10.54 16 8 H 0.11 3.08 5.42 -52.49 -0.28 2.80 16 9 O -0.21 -5.47 8.58 0.31 0.00 -5.47 16 10 C 0.17 3.88 6.65 -39.01 -0.26 3.62 16 11 C -0.23 -4.98 9.15 -39.45 -0.36 -5.34 16 12 C -0.03 -0.54 9.57 -39.28 -0.38 -0.92 16 13 C -0.15 -2.69 5.71 -104.86 -0.60 -3.29 16 14 C 0.25 4.18 6.47 -83.01 -0.54 3.64 16 15 N -0.52 -8.53 9.99 -9.92 -0.10 -8.63 16 16 C 0.14 1.82 11.14 -17.69 -0.20 1.62 16 17 C -0.26 -2.99 10.14 -39.04 -0.40 -3.39 16 18 C 0.23 2.86 7.09 -83.81 -0.59 2.27 16 19 C -0.22 -3.17 5.93 -103.99 -0.62 -3.78 16 20 C -0.08 -0.86 5.62 -27.29 -0.15 -1.01 16 21 C 0.12 0.97 7.97 -3.55 -0.03 0.94 16 22 N -0.74 -6.84 6.50 -58.06 -0.38 -7.22 16 23 C -0.05 -0.92 8.82 -39.28 -0.35 -1.27 16 24 C -0.20 -3.82 9.98 -39.45 -0.39 -4.21 16 25 H 0.28 7.38 8.31 -40.82 -0.34 7.04 16 26 H 0.14 3.09 5.62 -52.49 -0.30 2.80 16 27 H 0.12 2.17 7.96 -52.49 -0.42 1.75 16 28 H 0.15 1.51 8.06 -52.49 -0.42 1.09 16 29 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 30 H 0.09 0.89 6.18 -51.93 -0.32 0.57 16 31 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.41 2.73 8.96 -40.82 -0.37 2.37 16 35 H 0.12 1.66 5.37 -52.49 -0.28 1.38 16 36 H 0.12 2.11 8.06 -52.49 -0.42 1.69 16 LS Contribution 305.06 15.07 4.60 4.60 Total: -1.00 -30.96 305.06 -8.25 -39.21 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -3.64 Total: 5.26 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: -4.65 Total: -19.98 kcal Atomic # 7 Polarization: -40.34 SS G_CDS: 0.30 Total: -40.04 kcal Atomic # 8 Polarization: -5.47 SS G_CDS: 0.00 Total: -5.47 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.86 Total: 16.41 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.96 -8.25 -39.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243586900.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.907 kcal (2) G-P(sol) polarization free energy of solvation -30.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds