Wall clock time and date at job start Tue Mar 31 2020 05:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31550 * 1 3 3 Si 1.86793 * 120.00043 * 2 1 4 4 H 1.48501 * 109.47230 * 270.00383 * 3 2 1 5 5 H 1.48502 * 109.47007 * 30.00089 * 3 2 1 6 6 H 1.48500 * 109.47159 * 150.00327 * 3 2 1 7 7 C 1.38662 * 119.99881 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99933 * 359.97438 * 7 2 1 9 9 O 1.34807 * 119.99830 * 179.97438 * 7 2 1 10 10 C 1.35651 * 116.99742 * 185.09744 * 9 7 2 11 11 C 1.38764 * 120.14052 * 354.40052 * 10 9 7 12 12 C 1.38097 * 120.05354 * 180.02562 * 11 10 9 13 13 C 1.38458 * 120.32324 * 359.68027 * 12 11 10 14 14 C 1.37987 * 120.27743 * 0.59894 * 13 12 11 15 15 C 1.39315 * 119.94585 * 359.42755 * 14 13 12 16 16 C 1.48247 * 120.16459 * 180.25636 * 15 14 13 17 17 C 1.40085 * 120.88115 * 64.99350 * 16 15 14 18 18 C 1.37770 * 118.74141 * 180.02562 * 17 16 15 19 19 N 1.31712 * 121.27124 * 359.97438 * 18 17 16 20 20 C 1.33416 * 122.38493 * 0.02562 * 19 18 17 21 21 C 1.38580 * 119.45981 * 359.72351 * 20 19 18 22 22 C 1.51063 * 108.70840 * 179.80454 * 21 20 19 23 23 C 1.53809 * 104.35266 * 0.38402 * 22 21 20 24 24 N 1.39042 * 128.98465 * 179.97438 * 20 19 18 25 25 H 0.97002 * 120.00193 * 359.97438 * 1 2 3 26 26 H 1.08003 * 119.97249 * 0.02562 * 11 10 9 27 27 H 1.07996 * 119.83651 * 179.97438 * 12 11 10 28 28 H 1.08001 * 119.85958 * 180.30295 * 13 12 11 29 29 H 1.08001 * 120.02908 * 179.69698 * 14 13 12 30 30 H 1.08003 * 120.62263 * 359.97438 * 17 16 15 31 31 H 1.07999 * 119.36614 * 179.97438 * 18 17 16 32 32 H 1.09004 * 110.64851 * 241.57325 * 22 21 20 33 33 H 1.08994 * 110.37266 * 119.06335 * 22 21 20 34 34 H 1.09007 * 110.31177 * 240.85796 * 23 22 21 35 35 H 1.09004 * 110.30859 * 118.69191 * 23 22 21 36 36 H 0.97002 * 124.87527 * 359.97438 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4969 2.0464 -1.4001 5 1 1.4469 2.6526 0.7001 6 1 3.5471 1.4401 0.7000 7 6 2.0088 -1.2009 -0.0005 8 1 1.4687 -2.1362 -0.0005 9 8 3.3569 -1.2009 -0.0011 10 6 3.9726 -2.4047 -0.1090 11 6 3.2248 -3.5735 -0.0956 12 6 3.8535 -4.7982 -0.2051 13 6 5.2302 -4.8680 -0.3352 14 6 5.9876 -3.7146 -0.3442 15 6 5.3652 -2.4731 -0.2341 16 6 6.1736 -1.2305 -0.2490 17 6 6.8946 -0.8555 -1.3900 18 6 7.6318 0.3079 -1.3552 19 7 7.6667 1.0631 -0.2766 20 6 6.9989 0.7518 0.8356 21 6 6.2322 -0.4021 0.8699 22 6 5.5926 -0.5185 2.2335 23 6 6.0800 0.7282 2.9910 24 7 6.9385 1.4413 2.0416 25 1 -0.4850 0.8400 0.0004 26 1 2.1501 -3.5254 0.0004 27 1 3.2681 -5.7056 -0.1939 28 1 5.7138 -5.8295 -0.4251 29 1 7.0616 -3.7740 -0.4410 30 1 6.8736 -1.4673 -2.2798 31 1 8.1918 0.6064 -2.2290 32 1 5.9259 -1.4254 2.7382 33 1 4.5063 -0.5101 2.1450 34 1 6.6513 0.4363 3.8722 35 1 5.2332 1.3518 3.2777 36 1 7.3992 2.2743 2.2279 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243587688.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:46 Heat of formation + Delta-G solvation = 47.701932 kcal Electronic energy + Delta-G solvation = -21907.613179 eV Core-core repulsion = 18743.490306 eV Total energy + Delta-G solvation = -3164.122873 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.47269 -39.09648 -36.81100 -36.39775 -33.27773 -32.42231 -30.08819 -29.37648 -29.23582 -28.28930 -25.32897 -23.74195 -22.38574 -21.56180 -21.27525 -20.53547 -17.98567 -17.76013 -16.83830 -16.06606 -15.48372 -15.19660 -14.88159 -14.58441 -14.26135 -13.95607 -13.77909 -13.69887 -13.06283 -12.82594 -12.56838 -12.39560 -12.25387 -11.97380 -11.83351 -11.53363 -11.28355 -10.97619 -10.85072 -10.82583 -10.23312 -9.97167 -9.51145 -9.04701 -8.93801 -8.92526 -8.16697 -7.42271 -7.26438 -6.49027 -4.15209 1.55673 1.76304 2.13090 2.21780 3.17399 3.24216 3.33160 3.39393 4.18686 4.24333 4.40464 4.72785 4.85038 4.97816 5.02709 5.10829 5.17083 5.33162 5.50472 5.56244 5.66879 5.73939 5.76279 5.87748 6.07993 6.13601 6.21020 6.32695 6.43099 6.50359 6.69892 6.72987 6.80046 7.02799 7.09029 7.21837 7.30873 7.52202 7.71490 7.84758 7.95510 8.50943 8.86559 9.48453 10.58099 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.011528 B = 0.009873 C = 0.006494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2428.318480 B = 2835.237532 C = 4310.955233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.070 3.930 3 Si 0.896 3.104 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.254 1.254 7 C -0.391 4.391 8 H 0.107 0.893 9 O -0.203 6.203 10 C 0.177 3.823 11 C -0.222 4.222 12 C -0.069 4.069 13 C -0.207 4.207 14 C -0.057 4.057 15 C -0.139 4.139 16 C 0.080 3.920 17 C -0.218 4.218 18 C 0.137 3.863 19 N -0.549 5.549 20 C 0.381 3.619 21 C -0.183 4.183 22 C -0.084 4.084 23 C 0.125 3.875 24 N -0.728 5.728 25 H 0.280 0.720 26 H 0.135 0.865 27 H 0.111 0.889 28 H 0.110 0.890 29 H 0.115 0.885 30 H 0.132 0.868 31 H 0.152 0.848 32 H 0.081 0.919 33 H 0.099 0.901 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.947 -2.457 2.715 12.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.134 4.134 3 Si 0.721 3.279 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.177 1.177 7 C -0.466 4.466 8 H 0.125 0.875 9 O -0.106 6.106 10 C 0.124 3.876 11 C -0.241 4.241 12 C -0.087 4.087 13 C -0.226 4.226 14 C -0.075 4.075 15 C -0.140 4.140 16 C 0.072 3.928 17 C -0.241 4.241 18 C -0.020 4.020 19 N -0.266 5.266 20 C 0.147 3.853 21 C -0.190 4.190 22 C -0.121 4.121 23 C 0.000 4.000 24 N -0.365 5.365 25 H 0.090 0.910 26 H 0.153 0.847 27 H 0.129 0.871 28 H 0.128 0.872 29 H 0.133 0.867 30 H 0.150 0.850 31 H 0.169 0.831 32 H 0.100 0.900 33 H 0.117 0.883 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 12.231 -1.321 2.883 12.635 hybrid contribution -0.324 0.295 -0.043 0.441 sum 11.906 -1.026 2.840 12.283 Atomic orbital electron populations 1.69635 1.05553 1.28557 1.47520 1.24404 0.94912 0.98626 0.95487 0.86317 0.80596 0.81649 0.79319 1.19993 1.20859 1.17740 1.20776 0.76895 0.96588 1.52360 0.87529 1.83600 1.22430 1.25397 1.79213 1.19008 0.90383 0.85731 0.92505 1.21242 1.01180 0.91724 1.09944 1.20884 0.94351 0.96741 0.96753 1.20581 0.93970 0.97301 1.10740 1.20661 0.98553 0.90718 0.97614 1.17754 0.90022 0.92111 1.14133 1.18211 0.91648 0.91983 0.90927 1.21875 1.03063 1.00249 0.98881 1.22054 0.95533 0.90232 0.94197 1.66766 1.25594 1.34931 0.99355 1.18667 0.90701 0.89103 0.86830 1.20464 1.03805 0.97493 0.97269 1.20973 1.02504 0.97103 0.91549 1.21827 0.93262 0.93322 0.91603 1.44404 1.54493 1.26967 1.10595 0.90983 0.84701 0.87100 0.87190 0.86721 0.85042 0.83088 0.90023 0.88319 0.91422 0.91301 0.75117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.80 13.96 55.48 0.77 -24.02 16 2 C 0.07 1.92 5.49 -17.52 -0.10 1.82 16 3 Si 0.90 21.85 28.62 -169.99 -4.86 16.98 16 4 H -0.27 -6.81 7.11 56.52 0.40 -6.40 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.25 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.39 -10.58 9.95 30.89 0.31 -10.28 16 8 H 0.11 2.95 5.44 -52.48 -0.29 2.66 16 9 O -0.20 -5.08 7.02 0.42 0.00 -5.08 16 10 C 0.18 3.92 6.63 -38.73 -0.26 3.66 16 11 C -0.22 -4.56 9.16 -39.44 -0.36 -4.92 16 12 C -0.07 -1.18 10.03 -39.55 -0.40 -1.58 16 13 C -0.21 -3.29 10.03 -39.59 -0.40 -3.69 16 14 C -0.06 -0.95 9.75 -39.27 -0.38 -1.34 16 15 C -0.14 -2.71 5.21 -104.73 -0.55 -3.25 16 16 C 0.08 1.54 4.96 -104.68 -0.52 1.02 16 17 C -0.22 -3.73 9.88 -39.06 -0.39 -4.11 16 18 C 0.14 2.23 11.14 -17.77 -0.20 2.03 16 19 N -0.55 -10.03 10.38 -12.47 -0.13 -10.16 16 20 C 0.38 7.03 8.18 -154.31 -1.26 5.77 16 21 C -0.18 -3.52 5.84 -103.91 -0.61 -4.13 16 22 C -0.08 -1.43 6.72 -27.28 -0.18 -1.61 16 23 C 0.12 1.74 7.97 -3.61 -0.03 1.71 16 24 N -0.73 -11.12 6.49 -59.87 -0.39 -11.51 16 25 H 0.28 7.38 8.31 -40.82 -0.34 7.04 16 26 H 0.14 2.90 5.64 -52.48 -0.30 2.61 16 27 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 28 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 29 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 30 H 0.13 1.96 8.06 -52.48 -0.42 1.54 16 31 H 0.15 1.90 8.06 -52.49 -0.42 1.47 16 32 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.10 1.94 7.34 -51.93 -0.38 1.56 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.41 5.23 8.96 -40.82 -0.37 4.86 16 LS Contribution 309.14 15.07 4.66 4.66 Total: -1.00 -30.60 309.14 -9.11 -39.70 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -3.85 Total: 8.32 kcal Atomic # 6 Polarization: -13.58 SS G_CDS: -5.31 Total: -18.89 kcal Atomic # 7 Polarization: -45.95 SS G_CDS: 0.26 Total: -45.69 kcal Atomic # 8 Polarization: -5.08 SS G_CDS: 0.00 Total: -5.08 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.86 Total: 16.98 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.60 -9.11 -39.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243587688.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.406 kcal (2) G-P(sol) polarization free energy of solvation -30.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds