Wall clock time and date at job start Tue Mar 31 2020 05:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86807 * 119.99685 * 2 1 4 4 H 1.48498 * 109.47389 * 270.00302 * 3 2 1 5 5 H 1.48505 * 109.46719 * 30.00081 * 3 2 1 6 6 H 1.48498 * 109.47164 * 150.00067 * 3 2 1 7 7 C 1.38643 * 120.00603 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00037 * 359.97438 * 7 2 1 9 9 O 1.34818 * 120.00230 * 180.02562 * 7 2 1 10 10 C 1.35699 * 116.99891 * 174.94048 * 9 7 2 11 11 C 1.38994 * 119.94618 * 185.27379 * 10 9 7 12 12 C 1.37840 * 120.05264 * 179.72343 * 11 10 9 13 13 C 1.39438 * 119.94545 * 0.54713 * 12 11 10 14 14 C 1.48332 * 120.05032 * 179.70275 * 13 12 11 15 15 C 1.39746 * 120.91664 * 179.74486 * 14 13 12 16 16 N 1.32195 * 118.94120 * 179.76544 * 15 14 13 17 17 C 1.31828 * 120.94862 * 0.52148 * 16 15 14 18 18 C 1.50701 * 118.97369 * 179.70730 * 17 16 15 19 19 C 1.53004 * 117.50046 * 8.63476 * 18 17 16 20 20 C 1.52995 * 60.00213 * 252.51383 * 19 18 17 21 21 N 1.31834 * 122.05540 * 359.72341 * 17 16 15 22 22 C 1.32189 * 120.94339 * 0.02562 * 21 17 16 23 23 C 1.39433 * 119.89373 * 359.72721 * 13 12 11 24 24 C 1.37830 * 119.95057 * 359.97438 * 23 13 12 25 25 H 0.96997 * 120.00521 * 0.02562 * 1 2 3 26 26 H 1.08001 * 119.97359 * 359.97194 * 11 10 9 27 27 H 1.07997 * 120.03004 * 180.27126 * 12 11 10 28 28 H 1.07994 * 120.52709 * 359.97438 * 15 14 13 29 29 H 1.09000 * 115.55372 * 154.35232 * 18 17 16 30 30 H 1.09003 * 117.49532 * 0.02562 * 19 18 17 31 31 H 1.09000 * 117.50102 * 145.01795 * 19 18 17 32 32 H 1.08999 * 117.50150 * 252.50610 * 20 19 18 33 33 H 1.08999 * 117.49765 * 107.48652 * 20 19 18 34 34 H 1.08004 * 120.52423 * 180.02562 * 22 21 17 35 35 H 1.08007 * 120.01942 * 179.97438 * 23 13 12 36 36 H 1.07999 * 119.97421 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0466 -1.4000 5 1 1.4468 2.6527 0.7001 6 1 3.5471 1.4404 0.7000 7 6 2.0089 -1.2006 -0.0005 8 1 1.4690 -2.1360 -0.0005 9 8 3.3571 -1.2005 0.0000 10 6 3.9732 -2.4049 0.1060 11 6 5.3567 -2.4687 0.2233 12 6 5.9843 -3.6906 0.3369 13 6 5.2310 -4.8640 0.3226 14 6 5.9046 -6.1805 0.4381 15 6 5.1670 -7.3674 0.4311 16 7 5.8077 -8.5193 0.5316 17 6 7.1204 -8.5571 0.6474 18 6 7.8046 -9.8947 0.7657 19 6 6.9531 -11.1460 0.5420 20 6 7.4215 -10.7816 1.9521 21 7 7.8532 -7.4614 0.6633 22 6 7.2937 -6.2679 0.5630 23 6 3.8438 -4.7977 0.1992 24 6 3.2202 -3.5732 0.0920 25 1 -0.4851 0.8400 -0.0004 26 1 5.9401 -1.5598 0.2295 27 1 7.0589 -3.7395 0.4324 28 1 4.0910 -7.3441 0.3416 29 1 8.8410 -9.9240 0.4294 30 1 5.8981 -11.0018 0.3088 31 1 7.4291 -11.9989 0.0580 32 1 8.2058 -11.3947 2.3961 33 1 6.6747 -10.3977 2.6470 34 1 7.9006 -5.3747 0.5763 35 1 3.2584 -5.7053 0.1875 36 1 2.1457 -3.5215 -0.0040 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243590547.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:11 Heat of formation + Delta-G solvation = 71.375472 kcal Electronic energy + Delta-G solvation = -20031.510724 eV Core-core repulsion = 16868.414412 eV Total energy + Delta-G solvation = -3163.096312 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.06728 -39.32932 -37.45573 -36.64629 -33.69738 -32.82250 -32.20308 -30.57267 -28.47003 -25.83692 -24.73837 -24.48671 -22.53423 -21.90549 -21.71095 -20.59615 -18.18333 -17.89177 -17.22563 -16.91827 -15.85375 -15.38387 -14.89836 -14.70385 -14.36964 -14.13670 -13.99735 -13.69702 -13.67410 -12.83565 -12.52681 -12.48100 -12.33293 -11.99893 -11.83534 -11.66849 -11.10282 -10.92096 -10.82862 -10.77128 -10.75598 -10.56478 -10.30346 -9.62200 -9.47717 -9.11414 -8.91638 -8.52438 -7.29376 -6.60906 -4.25536 0.62485 1.14781 1.94292 2.19640 3.11687 3.14707 3.28080 3.47096 3.76420 3.96849 4.08077 4.20439 4.39204 4.57384 4.63747 4.71123 4.86856 4.88831 4.92904 4.94906 4.99042 5.27580 5.44834 5.48634 5.53012 5.66706 5.74915 5.90318 5.93088 6.04884 6.14687 6.30625 6.42021 6.55425 6.76555 6.97145 7.04733 7.09790 7.36559 7.59572 7.82515 8.15859 8.72503 9.31912 10.45463 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.049655 B = 0.002940 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.756084 B = 9523.110967 C = 9996.146622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.066 3.934 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.258 1.258 7 C -0.391 4.391 8 H 0.110 0.890 9 O -0.204 6.204 10 C 0.168 3.832 11 C -0.191 4.191 12 C -0.055 4.055 13 C -0.152 4.152 14 C -0.103 4.103 15 C 0.135 3.865 16 N -0.508 5.508 17 C 0.313 3.687 18 C -0.095 4.095 19 C -0.156 4.156 20 C -0.159 4.159 21 N -0.507 5.507 22 C 0.134 3.866 23 C -0.050 4.050 24 C -0.221 4.221 25 H 0.283 0.717 26 H 0.122 0.878 27 H 0.118 0.882 28 H 0.168 0.832 29 H 0.125 0.875 30 H 0.109 0.891 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.168 0.832 35 H 0.115 0.885 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.146 -14.298 1.458 18.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.182 1.182 7 C -0.466 4.466 8 H 0.127 0.873 9 O -0.108 6.108 10 C 0.114 3.886 11 C -0.210 4.210 12 C -0.074 4.074 13 C -0.154 4.154 14 C -0.107 4.107 15 C -0.032 4.032 16 N -0.221 5.221 17 C 0.047 3.953 18 C -0.115 4.115 19 C -0.194 4.194 20 C -0.197 4.197 21 N -0.220 5.220 22 C -0.033 4.033 23 C -0.068 4.068 24 C -0.240 4.240 25 H 0.093 0.907 26 H 0.140 0.860 27 H 0.136 0.864 28 H 0.185 0.815 29 H 0.143 0.857 30 H 0.128 0.872 31 H 0.116 0.884 32 H 0.118 0.882 33 H 0.113 0.887 34 H 0.185 0.815 35 H 0.133 0.867 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 12.450 -14.785 1.507 19.388 hybrid contribution -0.389 1.687 -0.118 1.735 sum 12.061 -13.098 1.389 17.859 Atomic orbital electron populations 1.69635 1.05668 1.28959 1.46208 1.24524 0.95081 0.99091 0.95246 0.86157 0.80368 0.81129 0.79180 1.19655 1.20561 1.18188 1.20845 0.76657 0.96888 1.52223 0.87262 1.83551 1.22911 1.26010 1.78288 1.19254 0.91736 0.85428 0.92162 1.20141 0.91902 0.97888 1.11042 1.20658 0.98439 0.91002 0.97253 1.17944 0.93155 0.90104 1.14210 1.20559 0.95267 0.95273 0.99638 1.23276 1.00748 0.86480 0.92689 1.67969 1.10553 1.29897 1.13665 1.21922 0.86248 0.93119 0.93973 1.20540 0.99289 0.85813 1.05893 1.23005 1.01306 0.96354 0.98703 1.22968 1.03453 1.01841 0.91462 1.67995 1.41436 0.98691 1.13833 1.23262 0.91962 0.95316 0.92742 1.20821 0.92889 0.97073 0.96055 1.21214 1.01389 0.91535 1.09885 0.90681 0.85961 0.86399 0.81511 0.85703 0.87230 0.88399 0.88156 0.88651 0.81541 0.86740 0.84426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.88 13.96 55.48 0.77 -23.10 16 2 C 0.07 1.74 5.49 -17.52 -0.10 1.65 16 3 Si 0.91 20.50 28.62 -169.99 -4.86 15.63 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 6 H -0.26 -5.83 7.11 56.52 0.40 -5.43 16 7 C -0.39 -10.36 9.94 30.88 0.31 -10.05 16 8 H 0.11 2.94 5.42 -52.48 -0.28 2.65 16 9 O -0.20 -5.03 8.58 0.24 0.00 -5.03 16 10 C 0.17 3.58 6.65 -39.02 -0.26 3.32 16 11 C -0.19 -3.43 9.98 -39.45 -0.39 -3.82 16 12 C -0.06 -0.85 9.44 -39.28 -0.37 -1.22 16 13 C -0.15 -2.38 5.88 -104.85 -0.62 -2.99 16 14 C -0.10 -1.48 5.91 -104.62 -0.62 -2.09 16 15 C 0.13 1.85 10.70 -16.83 -0.18 1.67 16 16 N -0.51 -7.18 9.32 -10.45 -0.10 -7.27 16 17 C 0.31 4.35 7.31 -157.13 -1.15 3.21 16 18 C -0.10 -1.03 6.23 -91.77 -0.57 -1.61 16 19 C -0.16 -1.41 10.01 -26.73 -0.27 -1.68 16 20 C -0.16 -1.44 10.23 -26.73 -0.27 -1.71 16 21 N -0.51 -7.30 10.32 -10.45 -0.11 -7.41 16 22 C 0.13 1.82 10.70 -16.83 -0.18 1.64 16 23 C -0.05 -0.83 9.44 -39.29 -0.37 -1.20 16 24 C -0.22 -4.36 9.15 -39.45 -0.36 -4.72 16 25 H 0.28 7.16 8.31 -40.82 -0.34 6.82 16 26 H 0.12 2.02 8.06 -52.49 -0.42 1.60 16 27 H 0.12 1.43 6.29 -52.49 -0.33 1.10 16 28 H 0.17 1.95 6.34 -52.49 -0.33 1.61 16 29 H 0.13 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.11 1.12 7.53 -51.93 -0.39 0.73 16 31 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.17 1.84 6.34 -52.48 -0.33 1.51 16 35 H 0.11 1.57 6.29 -52.48 -0.33 1.24 16 36 H 0.14 2.84 5.62 -52.49 -0.30 2.55 16 LS Contribution 311.96 15.07 4.70 4.70 Total: -1.00 -28.67 311.96 -8.54 -37.21 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -3.55 Total: 4.89 kcal Atomic # 6 Polarization: -14.22 SS G_CDS: -5.40 Total: -19.62 kcal Atomic # 7 Polarization: -38.35 SS G_CDS: 0.57 Total: -37.79 kcal Atomic # 8 Polarization: -5.03 SS G_CDS: 0.00 Total: -5.03 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.86 Total: 15.63 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.67 -8.54 -37.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243590547.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.581 kcal (2) G-P(sol) polarization free energy of solvation -28.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds