Wall clock time and date at job start Tue Mar 31 2020 05:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31545 * 1 3 3 Si 1.86805 * 119.99801 * 2 1 4 4 H 1.48499 * 109.46654 * 269.99538 * 3 2 1 5 5 H 1.48498 * 109.47249 * 29.99439 * 3 2 1 6 6 H 1.48501 * 109.47007 * 149.99945 * 3 2 1 7 7 C 1.38669 * 120.00433 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00510 * 180.02562 * 7 2 1 9 9 O 1.34817 * 119.99846 * 0.02562 * 7 2 1 10 10 C 1.35653 * 117.00468 * 185.05378 * 9 7 2 11 11 C 1.39040 * 119.94023 * 354.44585 * 10 9 7 12 12 C 1.37787 * 120.05971 * 179.97438 * 11 10 9 13 13 C 1.39517 * 119.94098 * 0.02562 * 12 11 10 14 14 C 1.48177 * 120.05862 * 179.97438 * 13 12 11 15 15 C 1.39838 * 120.55939 * 5.25838 * 14 13 12 16 16 C 1.38274 * 118.28859 * 180.26329 * 15 14 13 17 17 N 1.32474 * 119.19710 * 359.47637 * 16 15 14 18 18 C 1.31811 * 121.06654 * 0.28018 * 17 16 15 19 19 C 1.50707 * 119.05209 * 179.97438 * 18 17 16 20 20 C 1.52992 * 117.49939 * 8.74909 * 19 18 17 21 21 C 1.53000 * 117.49944 * 300.08654 * 19 18 17 22 22 N 1.31668 * 121.89372 * 359.97438 * 18 17 16 23 23 C 1.39510 * 119.88397 * 0.26599 * 13 12 11 24 24 C 1.37790 * 119.94686 * 359.47777 * 23 13 12 25 25 H 0.97003 * 119.99893 * 0.02562 * 1 2 3 26 26 H 1.07997 * 119.97096 * 359.97438 * 11 10 9 27 27 H 1.07990 * 120.03166 * 180.02562 * 12 11 10 28 28 H 1.07999 * 120.85406 * 0.02562 * 15 14 13 29 29 H 1.08000 * 120.39839 * 179.76016 * 16 15 14 30 30 H 1.08998 * 115.54659 * 154.41778 * 19 18 17 31 31 H 1.09005 * 117.50268 * 0.02562 * 20 19 18 32 32 H 1.09002 * 117.50206 * 145.01509 * 20 19 18 33 33 H 1.08990 * 117.49826 * 214.97637 * 21 19 18 34 34 H 1.08997 * 117.49837 * 359.97438 * 21 19 18 35 35 H 1.08000 * 120.02649 * 179.72596 * 23 13 12 36 36 H 1.07999 * 119.97534 * 180.25032 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2494 1.6178 0.0000 4 1 2.4969 2.0463 -1.4001 5 1 1.4468 2.6528 0.6999 6 1 3.5470 1.4403 0.7001 7 6 2.0089 -1.2009 0.0005 8 1 3.0888 -1.2009 0.0010 9 8 1.3349 -2.3684 0.0005 10 6 2.0695 -3.5038 0.1075 11 6 3.4582 -3.4356 0.0943 12 6 4.2068 -4.5872 0.2034 13 6 3.5702 -5.8225 0.3266 14 6 4.3728 -7.0626 0.4435 15 6 5.7663 -7.0010 0.5418 16 6 6.4692 -8.1875 0.6433 17 7 5.8045 -9.3334 0.6546 18 6 4.4897 -9.3580 0.5654 19 6 3.7797 -10.6873 0.5822 20 6 4.6124 -11.9287 0.9078 21 6 4.1257 -11.6869 -0.5232 22 7 3.7787 -8.2546 0.4621 23 6 2.1767 -5.8887 0.3335 24 6 1.4327 -4.7337 0.2294 25 1 -0.4850 0.8401 -0.0004 26 1 3.9505 -2.4791 -0.0015 27 1 5.2854 -4.5336 0.1935 28 1 6.2807 -6.0514 0.5347 29 1 7.5466 -8.1798 0.7171 30 1 2.7492 -10.6653 0.9364 31 1 5.6736 -11.7842 1.1104 32 1 4.1295 -12.7238 1.4760 33 1 3.3229 -12.3229 -0.8958 34 1 4.8665 -11.3830 -1.2628 35 1 1.6816 -6.8442 0.4243 36 1 0.3539 -4.7841 0.2388 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243590710.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:54 Heat of formation + Delta-G solvation = 70.151066 kcal Electronic energy + Delta-G solvation = -20100.501292 eV Core-core repulsion = 16937.351886 eV Total energy + Delta-G solvation = -3163.149406 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.91397 -39.12447 -37.30468 -36.50237 -33.56853 -32.55824 -31.88432 -30.30748 -28.68261 -25.70724 -25.17630 -23.97768 -22.47689 -22.17771 -21.52180 -20.22308 -18.22580 -17.49463 -17.40683 -16.40264 -15.59784 -15.25905 -14.77543 -14.61916 -14.47621 -14.31378 -13.82032 -13.80537 -13.53190 -12.89816 -12.49112 -12.23562 -11.88345 -11.82961 -11.63759 -11.25227 -11.17347 -11.00114 -10.92160 -10.68551 -10.57267 -10.43428 -10.33105 -9.51257 -9.29562 -9.02474 -8.92100 -8.36585 -7.27424 -6.65344 -4.21136 0.83672 1.13206 2.13308 2.36372 3.02822 3.03775 3.08829 3.55328 3.80480 3.81540 4.05614 4.25522 4.53254 4.65003 4.77576 4.91960 4.93868 4.96575 5.08703 5.16159 5.29601 5.42447 5.50678 5.59548 5.67147 5.75150 5.84200 5.99040 6.05907 6.09655 6.26869 6.48983 6.55158 6.72905 6.89552 7.04798 7.12364 7.24234 7.34518 7.62272 7.79638 8.32136 8.79183 9.45873 10.51253 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.041861 B = 0.003056 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.720927 B = 9160.656794 C = 9745.204519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.042 3.958 3 Si 0.945 3.055 4 H -0.271 1.271 5 H -0.275 1.275 6 H -0.265 1.265 7 C -0.393 4.393 8 H 0.097 0.903 9 O -0.162 6.162 10 C 0.171 3.829 11 C -0.241 4.241 12 C -0.034 4.034 13 C -0.179 4.179 14 C 0.260 3.740 15 C -0.248 4.248 16 C 0.150 3.850 17 N -0.544 5.544 18 C 0.352 3.648 19 C -0.098 4.098 20 C -0.155 4.155 21 C -0.157 4.157 22 N -0.525 5.525 23 C -0.019 4.019 24 C -0.203 4.203 25 H 0.274 0.726 26 H 0.133 0.867 27 H 0.114 0.886 28 H 0.144 0.856 29 H 0.163 0.837 30 H 0.127 0.873 31 H 0.109 0.891 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.095 0.905 35 H 0.126 0.874 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.883 -14.615 0.816 17.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.165 4.165 3 Si 0.769 3.231 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.190 1.190 7 C -0.469 4.469 8 H 0.115 0.885 9 O -0.063 6.063 10 C 0.114 3.886 11 C -0.261 4.261 12 C -0.053 4.053 13 C -0.182 4.182 14 C 0.118 3.882 15 C -0.271 4.271 16 C -0.013 4.013 17 N -0.260 5.260 18 C 0.085 3.915 19 C -0.118 4.118 20 C -0.193 4.193 21 C -0.195 4.195 22 N -0.239 5.239 23 C -0.038 4.038 24 C -0.222 4.222 25 H 0.084 0.916 26 H 0.151 0.849 27 H 0.132 0.868 28 H 0.162 0.838 29 H 0.180 0.820 30 H 0.145 0.855 31 H 0.127 0.873 32 H 0.116 0.884 33 H 0.119 0.881 34 H 0.113 0.887 35 H 0.144 0.856 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 8.968 -15.218 0.814 17.683 hybrid contribution 0.983 1.826 -0.028 2.074 sum 9.951 -13.393 0.786 16.703 Atomic orbital electron populations 1.70031 1.06128 1.28260 1.44036 1.25393 0.95906 0.99149 0.96022 0.85648 0.78989 0.79554 0.78930 1.19638 1.20041 1.18960 1.21463 0.92084 0.80577 1.52765 0.88549 1.83943 1.34906 1.11767 1.75646 1.19575 0.90318 0.87915 0.90805 1.21056 0.93657 0.98862 1.12497 1.20783 0.98522 0.91091 0.94946 1.17856 0.92889 0.89547 1.17867 1.20231 0.90280 0.91228 0.86495 1.22789 0.95830 1.01008 1.07434 1.22957 1.00395 0.87320 0.90655 1.68012 1.09874 1.30451 1.17635 1.21947 0.86316 0.92894 0.90375 1.20599 0.99492 0.85076 1.06628 1.23003 1.01245 0.97064 0.97973 1.22959 1.03435 1.00914 0.92225 1.68147 1.41195 0.97979 1.16619 1.20796 0.92312 0.97323 0.93415 1.20211 0.99933 0.89999 1.12045 0.91587 0.84943 0.86840 0.83810 0.82009 0.85514 0.87302 0.88408 0.88092 0.88696 0.85586 0.85934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.87 13.67 55.48 0.76 -23.11 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 19.41 29.55 -169.99 -5.02 14.39 16 4 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 5 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 6 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 7 C -0.39 -10.40 9.48 30.89 0.29 -10.11 16 8 H 0.10 2.33 5.19 -52.49 -0.27 2.05 16 9 O -0.16 -4.41 9.75 0.38 0.00 -4.40 16 10 C 0.17 3.95 6.65 -38.99 -0.26 3.69 16 11 C -0.24 -4.95 9.15 -39.45 -0.36 -5.31 16 12 C -0.03 -0.60 9.43 -39.27 -0.37 -0.97 16 13 C -0.18 -3.24 5.88 -104.86 -0.62 -3.86 16 14 C 0.26 4.33 6.75 -82.59 -0.56 3.78 16 15 C -0.25 -3.41 9.52 -38.97 -0.37 -3.78 16 16 C 0.15 1.87 11.29 -17.26 -0.19 1.68 16 17 N -0.54 -7.67 9.33 -10.80 -0.10 -7.77 16 18 C 0.35 5.28 7.31 -157.29 -1.15 4.13 16 19 C -0.10 -1.16 6.23 -91.77 -0.57 -1.73 16 20 C -0.16 -1.47 10.01 -26.70 -0.27 -1.74 16 21 C -0.16 -1.52 10.24 -26.69 -0.27 -1.80 16 22 N -0.52 -8.82 9.50 -7.30 -0.07 -8.89 16 23 C -0.02 -0.36 9.58 -39.27 -0.38 -0.73 16 24 C -0.20 -4.20 9.98 -39.45 -0.39 -4.59 16 25 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 26 H 0.13 2.65 5.62 -52.49 -0.30 2.36 16 27 H 0.11 1.62 6.30 -52.49 -0.33 1.29 16 28 H 0.14 1.64 6.36 -52.49 -0.33 1.30 16 29 H 0.16 1.40 8.06 -52.49 -0.42 0.97 16 30 H 0.13 1.41 8.14 -51.93 -0.42 0.99 16 31 H 0.11 1.12 7.54 -51.93 -0.39 0.73 16 32 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.13 2.19 7.58 -52.49 -0.40 1.79 16 36 H 0.12 2.43 8.06 -52.49 -0.42 2.00 16 LS Contribution 315.70 15.07 4.76 4.76 Total: -1.00 -30.07 315.70 -8.93 -39.00 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -3.69 Total: 6.39 kcal Atomic # 6 Polarization: -14.80 SS G_CDS: -5.57 Total: -20.36 kcal Atomic # 7 Polarization: -40.35 SS G_CDS: 0.59 Total: -39.77 kcal Atomic # 8 Polarization: -4.41 SS G_CDS: 0.00 Total: -4.40 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.02 Total: 14.39 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.07 -8.93 -39.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243590710.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.149 kcal (2) G-P(sol) polarization free energy of solvation -30.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds