Wall clock time and date at job start Tue Mar 31 2020 05:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86801 * 119.99735 * 2 1 4 4 H 1.48501 * 109.47323 * 270.00371 * 3 2 1 5 5 H 1.48494 * 109.47176 * 30.00429 * 3 2 1 6 6 H 1.48497 * 109.47052 * 150.00526 * 3 2 1 7 7 C 1.38653 * 120.00255 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99907 * 179.97438 * 7 2 1 9 9 O 1.34806 * 119.99491 * 359.97438 * 7 2 1 10 10 C 1.35706 * 116.99824 * 185.05161 * 9 7 2 11 11 C 1.38997 * 119.94423 * 354.45581 * 10 9 7 12 12 C 1.37843 * 120.04994 * 180.24595 * 11 10 9 13 13 C 1.39433 * 119.94873 * 359.48014 * 12 11 10 14 14 C 1.48327 * 120.05234 * 180.22992 * 13 12 11 15 15 C 1.39765 * 120.92117 * 130.01812 * 14 13 12 16 16 N 1.32184 * 118.94500 * 179.73517 * 15 14 13 17 17 C 1.31852 * 120.94523 * 0.52189 * 16 15 14 18 18 N 1.31819 * 122.04932 * 359.75117 * 17 16 15 19 19 C 1.32204 * 120.95046 * 359.97312 * 18 17 16 20 20 C 1.50694 * 120.52605 * 179.97438 * 19 18 17 21 21 C 1.53009 * 117.49846 * 8.64386 * 20 19 18 22 22 C 1.53005 * 59.99963 * 252.50966 * 21 20 19 23 23 C 1.39436 * 119.89217 * 0.51765 * 13 12 11 24 24 C 1.37840 * 119.94865 * 359.72912 * 23 13 12 25 25 H 0.96998 * 120.00200 * 359.97438 * 1 2 3 26 26 H 1.08000 * 119.98061 * 359.97438 * 11 10 9 27 27 H 1.08004 * 120.02511 * 179.72305 * 12 11 10 28 28 H 1.08000 * 120.52901 * 359.97438 * 15 14 13 29 29 H 1.07993 * 118.97458 * 179.72250 * 17 16 15 30 30 H 1.08996 * 115.55432 * 154.35471 * 20 19 18 31 31 H 1.08993 * 117.49635 * 359.97438 * 21 20 19 32 32 H 1.08999 * 117.49573 * 145.02248 * 21 20 19 33 33 H 1.08995 * 117.49596 * 252.50880 * 22 21 20 34 34 H 1.08999 * 117.51784 * 107.47792 * 22 21 20 35 35 H 1.08006 * 120.02227 * 179.70840 * 23 13 12 36 36 H 1.08004 * 119.97411 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4970 2.0466 -1.4001 5 1 1.4470 2.6526 0.7001 6 1 3.5471 1.4402 0.6999 7 6 2.0089 -1.2007 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3349 -2.3682 -0.0005 10 6 2.0699 -3.5040 0.1054 11 6 3.4582 -3.4358 0.0913 12 6 4.2069 -4.5886 0.1937 13 6 3.5708 -5.8227 0.3223 14 6 4.3743 -7.0641 0.4378 15 6 4.1241 -7.9896 1.4548 16 7 4.8606 -9.0854 1.5179 17 6 5.8247 -9.3055 0.6459 18 7 6.0972 -8.4564 -0.3249 19 6 5.4058 -7.3381 -0.4639 20 6 5.7258 -6.3738 -1.5769 21 6 6.7264 -6.8298 -2.6409 22 6 7.1335 -5.7750 -1.6100 23 6 2.1780 -5.8885 0.3362 24 6 1.4335 -4.7335 0.2284 25 1 -0.4850 0.8400 0.0004 26 1 3.9506 -2.4794 -0.0043 27 1 5.2855 -4.5356 0.1782 28 1 3.3390 -7.8140 2.1754 29 1 6.4098 -10.2094 0.7299 30 1 4.9012 -5.7388 -1.9004 31 1 7.1534 -7.8271 -2.5356 32 1 6.5599 -6.4949 -3.6647 33 1 7.2348 -4.7463 -1.9557 34 1 7.8279 -6.0783 -0.8265 35 1 1.6831 -6.8437 0.4310 36 1 0.3547 -4.7840 0.2387 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243592210.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:12 Heat of formation + Delta-G solvation = 67.693251 kcal Electronic energy + Delta-G solvation = -20712.828511 eV Core-core repulsion = 17549.572526 eV Total energy + Delta-G solvation = -3163.255985 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.04846 -39.06976 -37.29115 -36.65029 -33.23964 -32.80447 -32.06410 -30.38712 -28.24029 -25.64842 -25.31852 -23.91837 -22.44342 -21.89971 -21.13451 -20.87714 -18.16587 -17.57681 -17.24145 -16.76957 -15.66288 -15.35047 -14.85384 -14.61809 -14.35254 -14.08422 -13.77086 -13.68689 -13.48396 -12.91157 -12.74290 -12.14630 -11.90235 -11.76136 -11.58025 -11.48407 -11.31486 -11.05324 -10.83683 -10.59434 -10.53957 -10.38448 -10.14401 -9.56059 -9.32224 -9.07510 -8.84970 -8.36452 -7.24168 -6.59536 -4.17050 0.85677 1.11155 2.08198 2.19532 3.04852 3.06207 3.11026 3.61437 3.85308 3.99082 4.08733 4.25673 4.39340 4.44647 4.82730 4.92490 4.96678 5.03465 5.11638 5.17620 5.28957 5.45768 5.56655 5.62035 5.66397 5.79010 5.97035 6.04795 6.08210 6.17918 6.26139 6.45380 6.48522 6.72734 6.88034 7.04563 7.12409 7.18808 7.28449 7.62800 7.85023 8.16652 8.85544 9.52799 10.57567 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.024178 B = 0.004049 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.805811 B = 6913.095801 C = 7690.079948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.041 3.959 3 Si 0.942 3.058 4 H -0.272 1.272 5 H -0.276 1.276 6 H -0.266 1.266 7 C -0.394 4.394 8 H 0.095 0.905 9 O -0.169 6.169 10 C 0.161 3.839 11 C -0.235 4.235 12 C -0.043 4.043 13 C -0.162 4.162 14 C -0.097 4.097 15 C 0.142 3.858 16 N -0.523 5.523 17 C 0.272 3.728 18 N -0.518 5.518 19 C 0.202 3.798 20 C -0.117 4.117 21 C -0.159 4.159 22 C -0.158 4.158 23 C -0.052 4.052 24 C -0.192 4.192 25 H 0.272 0.728 26 H 0.130 0.870 27 H 0.111 0.889 28 H 0.167 0.833 29 H 0.190 0.810 30 H 0.131 0.869 31 H 0.106 0.894 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.113 0.887 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.349 -10.994 -1.275 15.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.164 4.164 3 Si 0.767 3.233 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.191 1.191 7 C -0.469 4.469 8 H 0.112 0.888 9 O -0.071 6.071 10 C 0.106 3.894 11 C -0.255 4.255 12 C -0.062 4.062 13 C -0.164 4.164 14 C -0.101 4.101 15 C -0.023 4.023 16 N -0.236 5.236 17 C -0.016 4.016 18 N -0.231 5.231 19 C 0.056 3.944 20 C -0.135 4.135 21 C -0.196 4.196 22 C -0.196 4.196 23 C -0.071 4.071 24 C -0.211 4.211 25 H 0.082 0.918 26 H 0.148 0.852 27 H 0.129 0.871 28 H 0.184 0.816 29 H 0.207 0.793 30 H 0.149 0.851 31 H 0.124 0.876 32 H 0.115 0.885 33 H 0.120 0.880 34 H 0.112 0.888 35 H 0.131 0.869 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 10.432 -11.614 -1.203 15.658 hybrid contribution -0.077 1.520 0.032 1.522 sum 10.356 -10.094 -1.171 14.509 Atomic orbital electron populations 1.70034 1.06051 1.28036 1.44864 1.25340 0.95869 0.99005 0.96205 0.85686 0.78986 0.79806 0.78859 1.19726 1.20116 1.19051 1.21390 0.91953 0.80664 1.52930 0.88766 1.83958 1.34638 1.11625 1.76844 1.19490 0.90288 0.87993 0.91613 1.21090 0.93661 0.98867 1.11844 1.20784 0.98453 0.91109 0.95833 1.17834 0.92336 0.90550 1.15657 1.20357 0.97104 0.96671 0.96018 1.23406 0.96141 0.87960 0.94818 1.68299 1.06935 1.21114 1.27267 1.24732 0.92567 0.97700 0.86597 1.67991 1.28854 1.03630 1.22664 1.20854 0.89909 0.90853 0.92789 1.21030 0.95077 1.00486 0.96955 1.22968 1.01953 1.00218 0.94469 1.22963 0.95390 0.98862 1.02383 1.20621 0.92078 0.96945 0.97408 1.20129 0.99717 0.90053 1.11233 0.91757 0.85193 0.87131 0.81572 0.79333 0.85098 0.87601 0.88523 0.88016 0.88798 0.86883 0.86124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.09 13.67 55.48 0.76 -23.33 16 2 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 3 Si 0.94 19.57 29.55 -169.99 -5.02 14.54 16 4 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 5 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 6 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 7 C -0.39 -10.43 9.48 30.89 0.29 -10.13 16 8 H 0.09 2.29 5.19 -52.49 -0.27 2.02 16 9 O -0.17 -4.55 9.75 0.25 0.00 -4.55 16 10 C 0.16 3.64 6.65 -39.02 -0.26 3.38 16 11 C -0.24 -4.72 9.15 -39.44 -0.36 -5.08 16 12 C -0.04 -0.74 7.91 -39.28 -0.31 -1.05 16 13 C -0.16 -2.63 4.95 -104.85 -0.52 -3.15 16 14 C -0.10 -1.45 5.49 -104.62 -0.57 -2.02 16 15 C 0.14 1.97 10.86 -16.83 -0.18 1.79 16 16 N -0.52 -7.22 10.42 -14.30 -0.15 -7.37 16 17 C 0.27 3.44 12.27 -92.08 -1.13 2.31 16 18 N -0.52 -7.14 9.48 -10.54 -0.10 -7.24 16 19 C 0.20 2.90 6.48 -81.88 -0.53 2.37 16 20 C -0.12 -1.51 4.25 -91.77 -0.39 -1.90 16 21 C -0.16 -1.74 10.04 -26.72 -0.27 -2.01 16 22 C -0.16 -1.75 10.12 -26.72 -0.27 -2.02 16 23 C -0.05 -0.87 9.54 -39.28 -0.37 -1.24 16 24 C -0.19 -3.76 9.98 -39.45 -0.39 -4.16 16 25 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 26 H 0.13 2.61 5.62 -52.49 -0.30 2.31 16 27 H 0.11 1.69 7.19 -52.48 -0.38 1.31 16 28 H 0.17 1.99 8.06 -52.49 -0.42 1.57 16 29 H 0.19 1.72 8.06 -52.49 -0.42 1.30 16 30 H 0.13 1.83 6.71 -51.93 -0.35 1.48 16 31 H 0.11 1.20 7.61 -51.93 -0.40 0.80 16 32 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 36 H 0.12 2.28 8.06 -52.48 -0.42 1.86 16 LS Contribution 314.17 15.07 4.73 4.73 Total: -1.00 -29.25 314.17 -8.93 -38.18 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -3.78 Total: 6.98 kcal Atomic # 6 Polarization: -16.57 SS G_CDS: -5.37 Total: -21.94 kcal Atomic # 7 Polarization: -38.45 SS G_CDS: 0.51 Total: -37.94 kcal Atomic # 8 Polarization: -4.55 SS G_CDS: 0.00 Total: -4.55 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.02 Total: 14.54 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.25 -8.93 -38.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243592210.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.868 kcal (2) G-P(sol) polarization free energy of solvation -29.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds