Wall clock time and date at job start Tue Mar 31 2020 05:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86800 * 120.00196 * 2 1 4 4 H 1.48503 * 109.47107 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.46994 * 120.00126 * 3 2 1 6 6 H 1.48490 * 109.47310 * 240.00338 * 3 2 1 7 7 C 1.38653 * 119.99684 * 179.72804 * 2 1 3 8 8 H 1.07998 * 119.99966 * 179.97438 * 7 2 1 9 9 O 1.34813 * 119.99945 * 359.97438 * 7 2 1 10 10 C 1.35718 * 116.99858 * 174.95612 * 9 7 2 11 11 C 1.39426 * 120.38469 * 5.12861 * 10 9 7 12 12 C 1.38220 * 118.45183 * 179.80184 * 11 10 9 13 13 C 1.39432 * 119.14851 * 0.47596 * 12 11 10 14 14 C 1.48283 * 119.65102 * 179.74400 * 13 12 11 15 15 C 1.39824 * 120.54450 * 312.13378 * 14 13 12 16 16 C 1.38403 * 118.30693 * 179.80740 * 15 14 13 17 17 C 1.38322 * 119.28710 * 0.46822 * 16 15 14 18 18 N 1.31896 * 121.04189 * 359.76711 * 17 16 15 19 19 C 1.31729 * 121.85876 * 359.97438 * 18 17 16 20 20 C 1.50703 * 119.70882 * 179.97438 * 19 18 17 21 21 C 1.53005 * 117.49322 * 2.93051 * 20 19 18 22 22 C 1.53000 * 117.49561 * 294.27130 * 20 19 18 23 23 N 1.32685 * 120.69399 * 359.76254 * 13 12 11 24 24 C 1.31658 * 121.68613 * 359.97438 * 23 13 12 25 25 H 0.96996 * 120.00470 * 180.02562 * 1 2 3 26 26 H 1.08002 * 120.77487 * 0.02562 * 11 10 9 27 27 H 1.08002 * 120.42897 * 180.21787 * 12 11 10 28 28 H 1.08001 * 120.84188 * 359.97438 * 15 14 13 29 29 H 1.08002 * 120.35236 * 180.19724 * 16 15 14 30 30 H 1.08001 * 119.47911 * 179.75194 * 17 16 15 31 31 H 1.08993 * 115.55305 * 148.60405 * 20 19 18 32 32 H 1.08994 * 117.49764 * 359.97438 * 21 20 19 33 33 H 1.08995 * 117.49348 * 145.02009 * 21 20 19 34 34 H 1.09004 * 117.49738 * 214.97174 * 22 20 19 35 35 H 1.08996 * 117.50121 * 359.97438 * 22 20 19 36 36 H 1.08002 * 119.60821 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 1.2846 2.7465 0.0006 5 1 3.1034 1.6963 1.2125 6 1 3.1033 1.6964 -1.2124 7 6 2.0088 -1.2008 0.0057 8 1 3.0888 -1.2009 0.0053 9 8 1.3346 -2.3683 0.0118 10 6 2.0697 -3.5047 -0.0892 11 6 3.4627 -3.4462 -0.0860 12 6 4.1717 -4.6284 -0.1867 13 6 3.4747 -5.8310 -0.2976 14 6 4.2241 -7.1053 -0.4120 15 6 5.2821 -7.2286 -1.3178 16 6 5.9523 -8.4378 -1.3835 17 6 5.5515 -9.4789 -0.5657 18 7 4.5462 -9.3345 0.2759 19 6 3.8818 -8.2016 0.3775 20 6 2.7404 -8.0903 1.3552 21 6 2.4510 -9.3016 2.2440 22 6 1.5016 -8.9499 1.0958 23 7 2.1479 -5.8469 -0.3021 24 6 1.4427 -4.7396 -0.2026 25 1 -0.4851 -0.8400 0.0004 26 1 3.9758 -2.4995 -0.0030 27 1 5.2516 -4.6205 -0.1838 28 1 5.5707 -6.4005 -1.9481 29 1 6.7766 -8.5684 -2.0690 30 1 6.0697 -10.4250 -0.6173 31 1 2.5854 -7.1013 1.7863 32 1 3.0858 -10.1791 2.1211 33 1 2.1052 -9.1094 3.2596 34 1 0.5316 -8.5265 1.3566 35 1 1.5120 -9.5956 0.2177 36 1 0.3639 -4.7915 -0.2103 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243687325.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:40 Heat of formation + Delta-G solvation = 61.093462 kcal Electronic energy + Delta-G solvation = -20735.011164 eV Core-core repulsion = 17571.468991 eV Total energy + Delta-G solvation = -3163.542173 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.48516 -39.45412 -37.40042 -36.64835 -33.05249 -32.41618 -31.43418 -31.33187 -28.50970 -25.43675 -24.51524 -23.67991 -22.67336 -22.12344 -21.30449 -20.54119 -18.67703 -17.43696 -16.80086 -16.40970 -15.88858 -15.67667 -15.03874 -14.29610 -14.21680 -14.04390 -13.98150 -13.70325 -13.57917 -13.15140 -12.71737 -12.58805 -12.43370 -11.81596 -11.31945 -11.25453 -11.03948 -10.76855 -10.56584 -10.42556 -10.24891 -10.00176 -9.76136 -9.42680 -9.16654 -9.05447 -8.87000 -8.59172 -7.48386 -7.01552 -4.29203 0.99887 1.31190 1.86843 2.10273 3.12273 3.16435 3.33304 3.71952 3.92175 4.20161 4.31457 4.39898 4.57961 4.79408 4.88773 4.91289 4.97494 5.12944 5.21231 5.28760 5.32088 5.41272 5.58345 5.60405 5.70561 5.83127 5.84771 5.96229 6.05190 6.15950 6.32100 6.35095 6.37997 6.41191 6.68076 6.80435 6.85930 7.21142 7.28579 8.08922 8.12902 8.56877 8.65697 9.28764 10.41918 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.027166 B = 0.003916 C = 0.003544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.469150 B = 7149.239874 C = 7897.709116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.015 3.985 3 Si 1.096 2.904 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.473 4.473 8 H 0.087 0.913 9 O -0.183 6.183 10 C 0.111 3.889 11 C -0.199 4.199 12 C -0.096 4.096 13 C 0.041 3.959 14 C -0.046 4.046 15 C -0.070 4.070 16 C -0.179 4.179 17 C 0.090 3.910 18 N -0.484 5.484 19 C 0.179 3.821 20 C -0.094 4.094 21 C -0.172 4.172 22 C -0.147 4.147 23 N -0.417 5.417 24 C 0.029 3.971 25 H 0.285 0.715 26 H 0.139 0.861 27 H 0.119 0.881 28 H 0.134 0.866 29 H 0.132 0.868 30 H 0.152 0.848 31 H 0.116 0.884 32 H 0.104 0.896 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.272 -12.758 -0.364 15.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.193 4.193 3 Si 0.919 3.081 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.548 4.548 8 H 0.104 0.896 9 O -0.084 6.084 10 C 0.054 3.946 11 C -0.225 4.225 12 C -0.116 4.116 13 C -0.094 4.094 14 C -0.049 4.049 15 C -0.096 4.096 16 C -0.199 4.199 17 C -0.067 4.067 18 N -0.193 5.193 19 C 0.040 3.960 20 C -0.113 4.113 21 C -0.209 4.209 22 C -0.184 4.184 23 N -0.126 5.126 24 C -0.135 4.135 25 H 0.095 0.905 26 H 0.157 0.843 27 H 0.137 0.863 28 H 0.151 0.849 29 H 0.150 0.850 30 H 0.169 0.831 31 H 0.134 0.866 32 H 0.122 0.878 33 H 0.109 0.891 34 H 0.114 0.886 35 H 0.108 0.892 36 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 8.127 -12.483 0.109 14.896 hybrid contribution 1.190 -0.026 -0.605 1.335 sum 9.317 -12.508 -0.496 15.605 Atomic orbital electron populations 1.70578 1.06626 1.32028 1.40427 1.26668 0.96759 1.01279 0.94548 0.83107 0.74607 0.73105 0.77313 1.19516 1.20494 1.20510 1.22311 0.93316 0.81990 1.57220 0.89576 1.83648 1.35525 1.12200 1.77061 1.20417 0.91009 0.88753 0.94425 1.21461 0.93822 0.98957 1.08230 1.21660 0.99733 0.91920 0.98326 1.18827 0.89472 0.90795 1.10331 1.19184 0.95613 0.93502 0.96610 1.21644 0.94036 0.97734 0.96217 1.21976 1.01851 0.94285 1.01824 1.22639 0.93478 0.98644 0.91975 1.67307 1.07168 1.24802 1.20004 1.20430 0.93883 0.87830 0.93817 1.20690 0.94342 0.96755 0.99509 1.22991 1.03292 0.99440 0.95146 1.22791 0.93800 1.01947 0.99898 1.67502 1.06808 1.29375 1.08900 1.21759 0.99645 0.85292 1.06771 0.90454 0.84337 0.86268 0.84861 0.84984 0.83097 0.86564 0.87801 0.89113 0.88552 0.89187 0.83129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.47 13.70 55.48 0.76 -23.71 16 2 C 0.01 0.39 5.49 -17.52 -0.10 0.30 16 3 Si 1.10 22.19 29.92 -169.99 -5.09 17.10 16 4 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 5 H -0.28 -5.32 7.11 56.52 0.40 -4.91 16 6 H -0.28 -5.32 7.11 56.52 0.40 -4.92 16 7 C -0.47 -12.45 9.50 30.89 0.29 -12.16 16 8 H 0.09 2.11 5.25 -52.49 -0.28 1.84 16 9 O -0.18 -4.81 9.17 0.20 0.00 -4.81 16 10 C 0.11 2.53 6.67 -38.87 -0.26 2.27 16 11 C -0.20 -4.08 9.25 -39.15 -0.36 -4.44 16 12 C -0.10 -1.72 9.52 -39.14 -0.37 -2.10 16 13 C 0.04 0.75 5.60 -82.92 -0.46 0.28 16 14 C -0.05 -0.75 5.62 -104.75 -0.59 -1.34 16 15 C -0.07 -0.94 9.60 -38.93 -0.37 -1.31 16 16 C -0.18 -2.02 10.10 -39.49 -0.40 -2.42 16 17 C 0.09 1.08 11.17 -17.49 -0.20 0.88 16 18 N -0.48 -7.14 9.28 -9.19 -0.09 -7.22 16 19 C 0.18 2.86 6.49 -82.22 -0.53 2.32 16 20 C -0.09 -1.45 4.68 -91.77 -0.43 -1.88 16 21 C -0.17 -2.23 10.03 -26.69 -0.27 -2.50 16 22 C -0.15 -2.02 10.24 -26.69 -0.27 -2.29 16 23 N -0.42 -8.10 8.68 -9.61 -0.08 -8.18 16 24 C 0.03 0.60 11.14 -17.36 -0.19 0.41 16 25 H 0.29 8.20 7.97 -40.82 -0.33 7.88 16 26 H 0.14 2.80 5.75 -52.49 -0.30 2.50 16 27 H 0.12 1.78 8.00 -52.49 -0.42 1.36 16 28 H 0.13 1.58 8.04 -52.49 -0.42 1.16 16 29 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 30 H 0.15 1.31 8.06 -52.49 -0.42 0.89 16 31 H 0.12 1.97 7.12 -51.93 -0.37 1.60 16 32 H 0.10 1.36 7.54 -51.93 -0.39 0.96 16 33 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.15 2.87 8.06 -52.49 -0.42 2.45 16 LS Contribution 315.43 15.07 4.75 4.75 Total: -1.00 -29.32 315.43 -8.09 -37.41 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -3.84 Total: 8.63 kcal Atomic # 6 Polarization: -19.46 SS G_CDS: -4.52 Total: -23.98 kcal Atomic # 7 Polarization: -39.70 SS G_CDS: 0.59 Total: -39.11 kcal Atomic # 8 Polarization: -4.81 SS G_CDS: 0.00 Total: -4.81 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.09 Total: 17.10 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.32 -8.09 -37.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243687325.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.502 kcal (2) G-P(sol) polarization free energy of solvation -29.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds