Wall clock time and date at job start Tue Mar 31 2020 05:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31550 * 1 3 3 Si 1.86798 * 119.99749 * 2 1 4 4 H 1.48498 * 109.47319 * 269.99985 * 3 2 1 5 5 H 1.48508 * 109.47271 * 30.00058 * 3 2 1 6 6 H 1.48498 * 109.47415 * 150.00092 * 3 2 1 7 7 C 1.38649 * 120.00246 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99947 * 359.97438 * 7 2 1 9 9 O 1.34813 * 119.99850 * 179.97438 * 7 2 1 10 10 C 1.35719 * 116.99715 * 185.05466 * 9 7 2 11 11 C 1.39424 * 120.38901 * 354.52246 * 10 9 7 12 12 C 1.38219 * 118.45577 * 180.02562 * 11 10 9 13 13 C 1.39424 * 119.14511 * 359.97438 * 12 11 10 14 14 C 1.48297 * 119.65077 * 179.97438 * 13 12 11 15 15 C 1.39424 * 120.05630 * 0.02562 * 14 13 12 16 16 C 1.38018 * 119.69247 * 179.97438 * 15 14 13 17 17 C 1.37964 * 120.37762 * 359.97438 * 16 15 14 18 18 C 1.39748 * 120.54931 * 0.02562 * 17 16 15 19 19 C 1.38413 * 119.09581 * 0.02562 * 18 17 16 20 20 C 1.51209 * 108.59322 * 179.97438 * 19 18 17 21 21 C 1.53752 * 104.51985 * 359.77962 * 20 19 18 22 22 N 1.39618 * 129.25719 * 179.97438 * 18 17 16 23 23 N 1.32684 * 120.70253 * 0.26120 * 13 12 11 24 24 C 1.31662 * 121.68225 * 359.46875 * 23 13 12 25 25 H 0.97006 * 120.00571 * 359.97438 * 1 2 3 26 26 H 1.08003 * 120.76818 * 359.97438 * 11 10 9 27 27 H 1.08000 * 120.42730 * 179.97438 * 12 11 10 28 28 H 1.08005 * 120.15510 * 359.97438 * 15 14 13 29 29 H 1.08001 * 119.81653 * 179.97438 * 16 15 14 30 30 H 1.07994 * 119.72384 * 180.02562 * 17 16 15 31 31 H 1.09011 * 110.42100 * 118.76235 * 20 19 18 32 32 H 1.09001 * 110.42709 * 241.11608 * 20 19 18 33 33 H 1.08997 * 110.40936 * 241.37200 * 21 20 19 34 34 H 1.09002 * 110.20051 * 119.21591 * 21 20 19 35 35 H 0.97009 * 124.95812 * 0.02562 * 22 18 17 36 36 H 1.07994 * 119.61034 * 180.27097 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2494 1.6178 0.0000 4 1 2.4969 2.0465 -1.4000 5 1 1.4468 2.6527 0.7001 6 1 3.5470 1.4403 0.7000 7 6 2.0088 -1.2007 -0.0005 8 1 1.4689 -2.1360 -0.0005 9 8 3.3569 -1.2006 -0.0011 10 6 3.9731 -2.4051 -0.1081 11 6 3.2266 -3.5826 -0.0970 12 6 3.8951 -4.7873 -0.2080 13 6 5.2842 -4.7845 -0.3271 14 6 6.0129 -6.0706 -0.4464 15 6 5.3101 -7.2747 -0.4396 16 6 5.9958 -8.4672 -0.5515 17 6 7.3703 -8.4732 -0.6704 18 6 8.0877 -7.2739 -0.6786 19 6 7.4006 -6.0778 -0.5653 20 6 8.3993 -4.9429 -0.6001 21 6 9.7646 -5.6352 -0.7434 22 7 9.4644 -7.0688 -0.7876 23 7 5.9617 -3.6437 -0.3293 24 6 5.3554 -2.4792 -0.2305 25 1 -0.4851 0.8400 0.0004 26 1 2.1510 -3.5541 -0.0030 27 1 3.3485 -5.7187 -0.2025 28 1 4.2340 -7.2743 -0.3472 29 1 5.4534 -9.4011 -0.5461 30 1 7.8961 -9.4124 -0.7577 31 1 8.2069 -4.2931 -1.4540 32 1 8.3592 -4.3723 0.3277 33 1 10.3979 -5.4079 0.1141 34 1 10.2506 -5.3215 -1.6672 35 1 10.1260 -7.7727 -0.8761 36 1 5.9395 -1.5709 -0.2402 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243851468.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:04 Heat of formation + Delta-G solvation = 44.348771 kcal Electronic energy + Delta-G solvation = -20676.507906 eV Core-core repulsion = 17512.239629 eV Total energy + Delta-G solvation = -3164.268277 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.33231 -39.46937 -37.47219 -36.02589 -32.72727 -32.19023 -31.58337 -29.71399 -29.06485 -27.82750 -25.47772 -23.25354 -23.09739 -21.97777 -20.86755 -20.67755 -18.22415 -17.59950 -16.96476 -16.05222 -15.50226 -15.42052 -15.28522 -14.76140 -14.32179 -14.21897 -13.64944 -13.56240 -12.93565 -12.88620 -12.62537 -12.53643 -12.19129 -12.12826 -11.83416 -11.77192 -11.57095 -11.28709 -11.01811 -10.69321 -10.37988 -10.04460 -9.80367 -9.17508 -9.08921 -8.85699 -8.65064 -7.34873 -7.15692 -6.60101 -4.24726 1.15903 1.77169 1.95783 2.39725 3.12995 3.16991 3.30327 3.46554 3.99955 4.09587 4.53213 4.60039 4.79711 4.88975 4.94861 4.96492 5.15448 5.23953 5.36804 5.48209 5.53293 5.65530 5.69644 5.76342 5.89191 5.93342 6.09611 6.20830 6.38616 6.42311 6.55610 6.66693 6.72629 6.82266 6.91831 7.01309 7.21963 7.36645 7.57553 7.80539 7.88249 8.63304 8.73306 9.31160 10.46315 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.032387 B = 0.003780 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.326227 B = 7404.964488 C = 8244.757016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.067 3.933 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.257 1.257 7 C -0.392 4.392 8 H 0.108 0.892 9 O -0.200 6.200 10 C 0.114 3.886 11 C -0.189 4.189 12 C -0.100 4.100 13 C 0.051 3.949 14 C 0.044 3.956 15 C -0.169 4.169 16 C -0.077 4.077 17 C -0.193 4.193 18 C 0.188 3.812 19 C -0.142 4.142 20 C -0.065 4.065 21 C 0.114 3.886 22 N -0.751 5.751 23 N -0.428 5.428 24 C 0.031 3.969 25 H 0.283 0.717 26 H 0.144 0.856 27 H 0.126 0.874 28 H 0.123 0.877 29 H 0.120 0.880 30 H 0.111 0.889 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.407 0.593 36 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.193 -12.011 -1.185 18.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.181 1.181 7 C -0.467 4.467 8 H 0.125 0.875 9 O -0.102 6.102 10 C 0.058 3.942 11 C -0.215 4.215 12 C -0.120 4.120 13 C -0.084 4.084 14 C 0.043 3.957 15 C -0.190 4.190 16 C -0.095 4.095 17 C -0.216 4.216 18 C 0.086 3.914 19 C -0.148 4.148 20 C -0.102 4.102 21 C -0.010 4.010 22 N -0.384 5.384 23 N -0.137 5.137 24 C -0.132 4.132 25 H 0.093 0.907 26 H 0.161 0.839 27 H 0.143 0.857 28 H 0.141 0.859 29 H 0.138 0.862 30 H 0.129 0.871 31 H 0.105 0.895 32 H 0.104 0.896 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.243 0.757 36 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 15.037 -11.508 -1.232 18.975 hybrid contribution -0.663 0.337 0.046 0.746 sum 14.374 -11.170 -1.186 18.242 Atomic orbital electron populations 1.69635 1.05694 1.28985 1.46103 1.24514 0.95075 0.99114 0.95158 0.86151 0.80410 0.81026 0.79228 1.19607 1.20535 1.18088 1.20818 0.76647 0.96871 1.52412 0.87452 1.83554 1.22880 1.25349 1.78396 1.20321 0.93237 0.86084 0.94603 1.21599 1.01619 0.91532 1.06744 1.21784 0.94205 0.98060 0.97928 1.19199 0.90046 0.90942 1.08220 1.17798 0.90569 0.90974 0.96373 1.20877 0.99642 0.91185 1.07284 1.20565 0.93148 0.97552 0.98283 1.20241 0.94088 0.95232 1.12023 1.18275 0.84437 0.94105 0.94629 1.19763 0.92891 0.93870 1.08236 1.20879 0.89448 0.95921 1.03988 1.21890 0.98138 0.80495 1.00513 1.44684 1.03795 1.07063 1.82890 1.67438 1.39239 0.97288 1.09745 1.21774 0.89385 0.95628 1.06447 0.90666 0.83893 0.85668 0.85866 0.86164 0.87109 0.89524 0.89568 0.92137 0.92130 0.75669 0.83085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.97 13.96 55.48 0.77 -23.19 16 2 C 0.07 1.78 5.49 -17.52 -0.10 1.68 16 3 Si 0.91 20.58 28.62 -169.99 -4.86 15.71 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.26 -5.82 7.11 56.52 0.40 -5.42 16 7 C -0.39 -10.49 9.95 30.88 0.31 -10.18 16 8 H 0.11 2.92 5.48 -52.49 -0.29 2.64 16 9 O -0.20 -4.97 8.59 0.20 0.00 -4.97 16 10 C 0.11 2.51 6.67 -38.87 -0.26 2.25 16 11 C -0.19 -3.91 9.25 -39.15 -0.36 -4.28 16 12 C -0.10 -1.82 9.45 -39.15 -0.37 -2.19 16 13 C 0.05 0.93 6.73 -82.92 -0.56 0.38 16 14 C 0.04 0.73 5.87 -104.93 -0.62 0.12 16 15 C -0.17 -2.41 9.42 -39.22 -0.37 -2.78 16 16 C -0.08 -0.95 10.00 -39.76 -0.40 -1.35 16 17 C -0.19 -2.40 10.07 -39.12 -0.39 -2.80 16 18 C 0.19 2.56 7.03 -83.68 -0.59 1.98 16 19 C -0.14 -2.21 6.10 -103.92 -0.63 -2.84 16 20 C -0.07 -0.89 5.25 -27.24 -0.14 -1.03 16 21 C 0.11 1.21 7.96 -3.63 -0.03 1.18 16 22 N -0.75 -8.29 6.53 -58.14 -0.38 -8.67 16 23 N -0.43 -8.11 7.99 -9.61 -0.08 -8.19 16 24 C 0.03 0.61 11.14 -17.35 -0.19 0.42 16 25 H 0.28 7.19 8.31 -40.82 -0.34 6.85 16 26 H 0.14 3.02 5.75 -52.48 -0.30 2.71 16 27 H 0.13 1.90 6.18 -52.49 -0.32 1.57 16 28 H 0.12 1.57 6.18 -52.48 -0.32 1.25 16 29 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 30 H 0.11 1.12 8.06 -52.49 -0.42 0.70 16 31 H 0.09 1.24 7.96 -51.92 -0.41 0.82 16 32 H 0.09 1.23 7.95 -51.93 -0.41 0.82 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.41 3.40 8.96 -40.82 -0.37 3.04 16 36 H 0.15 2.66 8.06 -52.49 -0.42 2.24 16 LS Contribution 304.63 15.07 4.59 4.59 Total: -1.00 -28.99 304.63 -8.33 -37.32 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -3.68 Total: 6.86 kcal Atomic # 6 Polarization: -14.75 SS G_CDS: -4.70 Total: -19.46 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: 0.32 Total: -40.05 kcal Atomic # 8 Polarization: -4.97 SS G_CDS: 0.00 Total: -4.97 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -4.86 Total: 15.71 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -28.99 -8.33 -37.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243851468.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.671 kcal (2) G-P(sol) polarization free energy of solvation -28.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds