Wall clock time and date at job start Tue Mar 31 2020 05:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30778 * 1 3 3 Si 1.86794 * 120.00135 * 2 1 4 4 H 1.48498 * 109.47501 * 275.40387 * 3 2 1 5 5 H 1.48508 * 109.47013 * 35.40400 * 3 2 1 6 6 H 1.48501 * 109.47142 * 155.39793 * 3 2 1 7 7 C 1.40074 * 119.99835 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00127 * 341.86228 * 7 2 1 9 9 C 1.40859 * 119.99346 * 161.86583 * 7 2 1 10 10 C 1.40761 * 120.34014 * 330.14634 * 9 7 2 11 11 C 1.36419 * 119.98890 * 180.30333 * 10 9 7 12 12 C 1.38935 * 120.69414 * 359.69608 * 11 10 9 13 13 C 1.38064 * 120.67799 * 0.02562 * 12 11 10 14 14 C 1.39191 * 119.98302 * 0.02562 * 13 12 11 15 15 C 1.47812 * 120.33680 * 179.97438 * 14 13 12 16 16 C 1.39915 * 120.16722 * 270.02297 * 15 14 13 17 17 F 1.35102 * 120.10285 * 359.95795 * 16 15 14 18 18 C 1.38167 * 119.79207 * 179.97438 * 16 15 14 19 19 C 1.38350 * 120.12299 * 359.97438 * 18 16 15 20 20 C 1.38411 * 120.33113 * 0.02562 * 19 18 16 21 21 C 1.37925 * 120.21130 * 359.97438 * 20 19 18 22 22 C 1.50697 * 120.06281 * 180.02562 * 21 20 19 23 23 C 1.53002 * 117.49876 * 8.75253 * 22 21 20 24 24 C 1.53000 * 117.50094 * 300.09291 * 22 21 20 25 25 H 0.96997 * 120.00207 * 359.97438 * 1 2 3 26 26 H 1.07998 * 120.00017 * 0.02562 * 10 9 7 27 27 H 1.08001 * 119.65032 * 179.72126 * 11 10 9 28 28 H 1.08005 * 119.66054 * 180.02562 * 12 11 10 29 29 H 1.08000 * 120.00652 * 179.97438 * 13 12 11 30 30 H 1.07995 * 119.94011 * 179.97438 * 18 16 15 31 31 H 1.08001 * 119.82899 * 180.28656 * 19 18 16 32 32 H 1.08000 * 119.89071 * 179.97438 * 20 19 18 33 33 H 1.08996 * 115.54877 * 154.41758 * 22 21 20 34 34 H 1.09000 * 117.49974 * 359.97438 * 23 22 21 35 35 H 1.09003 * 117.50138 * 145.01728 * 23 22 21 36 36 H 1.09004 * 117.49516 * 214.97425 * 24 22 21 37 37 H 1.08994 * 117.49924 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2418 1.6177 0.0000 4 1 2.3752 2.1123 -1.3938 5 1 1.5010 2.6170 0.8112 6 1 3.5917 1.4098 0.5829 7 6 2.0081 -1.2131 -0.0005 8 1 1.5084 -2.1252 0.2902 9 6 3.3642 -1.2431 -0.3803 10 6 3.8630 -0.3115 -1.3101 11 6 5.1762 -0.3510 -1.6775 12 6 6.0353 -1.3004 -1.1381 13 6 5.5773 -2.2239 -0.2196 14 6 4.2424 -2.2098 0.1744 15 6 3.7435 -3.1952 1.1568 16 6 3.2328 -4.4236 0.7233 17 9 3.1930 -4.7134 -0.5957 18 6 2.7691 -5.3391 1.6483 19 6 2.8099 -5.0428 2.9991 20 6 3.3141 -3.8292 3.4336 21 6 3.7806 -2.9052 2.5221 22 6 4.3293 -1.5852 2.9988 23 6 4.5337 -1.4075 4.5047 24 6 3.3911 -0.6763 3.7955 25 1 -0.4850 0.8400 0.0004 26 1 3.2051 0.4316 -1.7360 27 1 5.5521 0.3636 -2.3948 28 1 7.0720 -1.3163 -1.4405 29 1 6.2544 -2.9574 0.1924 30 1 2.3740 -6.2878 1.3164 31 1 2.4504 -5.7639 3.7184 32 1 3.3422 -3.6052 4.4897 33 1 5.0482 -1.1071 2.3335 34 1 4.2709 -2.2453 5.1506 35 1 5.3869 -0.8122 4.8301 36 1 3.4931 0.3997 3.6546 37 1 2.3768 -1.0330 3.9744 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244120976.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:37 Heat of formation + Delta-G solvation = 17.752994 kcal Electronic energy + Delta-G solvation = -22001.988736 eV Core-core repulsion = 18816.647218 eV Total energy + Delta-G solvation = -3185.341519 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.112 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.11483 -39.28863 -37.51186 -36.08765 -33.65535 -31.93217 -30.41686 -29.71214 -28.25302 -25.17272 -23.58314 -22.64286 -21.90368 -21.26956 -20.02876 -19.67541 -17.42594 -16.84895 -16.11044 -15.89867 -15.20863 -14.90993 -14.81080 -14.34050 -13.92517 -13.80864 -13.68239 -12.99464 -12.65878 -12.49466 -12.04104 -11.91253 -11.87359 -11.63264 -11.36521 -11.02445 -10.99826 -10.85521 -10.42155 -10.33751 -10.18779 -9.96783 -9.87221 -9.58207 -9.20939 -8.05561 -7.94423 -7.70329 -7.59337 -6.99346 -4.50731 1.69432 1.75878 2.49540 2.66700 3.07784 3.16910 3.27705 3.93704 3.94823 4.41910 4.46668 4.80035 5.06065 5.21844 5.29434 5.32666 5.43857 5.48991 5.60045 5.72754 5.90735 5.93246 5.99181 6.07360 6.21361 6.33254 6.38968 6.44712 6.54846 6.59295 6.69478 6.71680 6.81764 6.87801 7.10096 7.14868 7.34650 7.43325 7.61454 7.73751 7.85059 8.08363 8.32881 8.63688 8.75955 10.02421 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.013454 B = 0.008673 C = 0.007755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.717220 B = 3227.804689 C = 3609.572128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.088 3.912 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.290 1.290 6 H -0.242 1.242 7 C -0.430 4.430 8 H 0.090 0.910 9 C 0.115 3.885 10 C -0.234 4.234 11 C -0.073 4.073 12 C -0.249 4.249 13 C -0.057 4.057 14 C -0.171 4.171 15 C -0.005 4.005 16 C 0.103 3.897 17 F -0.136 7.136 18 C -0.166 4.166 19 C -0.106 4.106 20 C -0.138 4.138 21 C -0.012 4.012 22 C -0.098 4.098 23 C -0.187 4.187 24 C -0.160 4.160 25 H 0.285 0.715 26 H 0.100 0.900 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.126 0.874 31 H 0.123 0.877 32 H 0.122 0.878 33 H 0.117 0.883 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.575 -3.244 6.859 9.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.132 4.132 3 Si 0.733 3.267 4 H -0.197 1.197 5 H -0.218 1.218 6 H -0.165 1.165 7 C -0.458 4.458 8 H 0.108 0.892 9 C 0.112 3.888 10 C -0.253 4.253 11 C -0.091 4.091 12 C -0.268 4.268 13 C -0.075 4.075 14 C -0.173 4.173 15 C -0.006 4.006 16 C 0.084 3.916 17 F -0.115 7.115 18 C -0.185 4.185 19 C -0.124 4.124 20 C -0.156 4.156 21 C -0.013 4.013 22 C -0.116 4.116 23 C -0.224 4.224 24 C -0.197 4.197 25 H 0.096 0.904 26 H 0.118 0.882 27 H 0.110 0.890 28 H 0.112 0.888 29 H 0.111 0.889 30 H 0.144 0.856 31 H 0.141 0.859 32 H 0.140 0.860 33 H 0.135 0.865 34 H 0.112 0.888 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 5.274 -3.165 6.825 9.188 hybrid contribution 0.039 0.695 -0.429 0.818 sum 5.313 -2.470 6.396 8.674 Atomic orbital electron populations 1.69679 1.08163 1.30288 1.34290 1.26173 0.94628 1.01623 0.90784 0.86385 0.81531 0.79873 0.78886 1.19714 1.21789 1.16461 1.19363 0.92984 0.95932 1.37547 0.89232 1.17559 0.92396 0.89844 0.89016 1.20745 0.95864 1.04603 1.04060 1.20382 0.93843 0.97037 0.97842 1.20234 0.98332 1.01971 1.06282 1.20602 0.93940 0.96821 0.96159 1.18283 0.93185 1.02563 1.03234 1.18545 0.97482 0.91695 0.92910 1.17929 1.01331 0.94637 0.77734 1.91467 1.94260 1.93407 1.32351 1.20928 1.04380 0.99869 0.93300 1.20777 1.00168 0.96998 0.94485 1.20898 1.01307 0.94120 0.99323 1.19060 0.96937 0.93813 0.91451 1.20881 1.02753 0.94925 0.93075 1.23086 1.01066 1.03366 0.94855 1.22912 0.95613 0.98158 1.02986 0.90409 0.88213 0.88995 0.88839 0.88861 0.85644 0.85948 0.86031 0.86499 0.88790 0.88952 0.88884 0.88576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.10 13.93 55.55 0.77 -20.33 16 2 C 0.09 2.27 5.41 -17.31 -0.09 2.17 16 3 Si 0.91 20.49 24.52 -169.99 -4.17 16.32 16 4 H -0.27 -6.01 6.71 56.52 0.38 -5.63 16 5 H -0.29 -6.32 7.11 56.52 0.40 -5.91 16 6 H -0.24 -5.52 6.86 56.52 0.39 -5.13 16 7 C -0.43 -11.50 8.95 -37.90 -0.34 -11.84 16 8 H 0.09 2.60 7.55 -52.49 -0.40 2.20 16 9 C 0.12 2.89 5.13 -106.55 -0.55 2.34 16 10 C -0.23 -5.63 7.11 -39.28 -0.28 -5.91 16 11 C -0.07 -1.58 9.96 -39.98 -0.40 -1.98 16 12 C -0.25 -5.19 10.03 -39.39 -0.40 -5.58 16 13 C -0.06 -1.22 9.66 -39.29 -0.38 -1.60 16 14 C -0.17 -3.95 3.64 -104.23 -0.38 -4.33 16 15 C -0.01 -0.12 4.12 -104.84 -0.43 -0.55 16 16 C 0.10 2.12 7.29 -38.98 -0.28 1.83 16 17 F -0.14 -3.01 16.83 2.25 0.04 -2.97 16 18 C -0.17 -2.82 10.01 -39.57 -0.40 -3.22 16 19 C -0.11 -1.61 10.04 -39.48 -0.40 -2.00 16 20 C -0.14 -2.21 9.29 -39.63 -0.37 -2.58 16 21 C -0.01 -0.23 5.65 -104.22 -0.59 -0.82 16 22 C -0.10 -1.73 5.54 -91.77 -0.51 -2.24 16 23 C -0.19 -2.57 9.86 -26.69 -0.26 -2.83 16 24 C -0.16 -2.61 10.17 -26.69 -0.27 -2.88 16 25 H 0.29 6.81 8.29 -40.82 -0.34 6.48 16 26 H 0.10 2.40 4.72 -52.49 -0.25 2.15 16 27 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 28 H 0.09 1.70 8.06 -52.48 -0.42 1.28 16 29 H 0.09 1.80 8.06 -52.49 -0.42 1.37 16 30 H 0.13 1.81 8.06 -52.49 -0.42 1.39 16 31 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16 32 H 0.12 1.61 6.02 -52.49 -0.32 1.30 16 33 H 0.12 2.24 7.25 -51.93 -0.38 1.87 16 34 H 0.09 1.14 6.18 -51.93 -0.32 0.82 16 35 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 37 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 LS Contribution 312.52 15.07 4.71 4.71 Total: -1.00 -27.65 312.52 -9.17 -36.82 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -4.21 Total: 7.45 kcal Atomic # 6 Polarization: -35.69 SS G_CDS: -6.32 Total: -42.01 kcal Atomic # 7 Polarization: -21.10 SS G_CDS: 0.77 Total: -20.33 kcal Atomic # 9 Polarization: -3.01 SS G_CDS: 0.04 Total: -2.97 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -4.17 Total: 16.32 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -27.65 -9.17 -36.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244120976.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.577 kcal (2) G-P(sol) polarization free energy of solvation -27.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds