Wall clock time and date at job start Tue Mar 31 2020 05:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30777 * 1 3 3 Si 1.86802 * 119.99982 * 2 1 4 4 H 1.48502 * 109.46827 * 239.99482 * 3 2 1 5 5 H 1.48506 * 109.46967 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47545 * 119.99462 * 3 2 1 7 7 C 1.40064 * 120.00164 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00333 * 195.48151 * 7 2 1 9 9 C 1.40867 * 120.00021 * 15.47262 * 7 2 1 10 10 C 1.40754 * 120.32951 * 25.28399 * 9 7 2 11 11 C 1.36418 * 119.99125 * 180.02562 * 10 9 7 12 12 C 1.38939 * 120.69036 * 0.02562 * 11 10 9 13 13 C 1.38067 * 120.67972 * 359.67987 * 12 11 10 14 14 C 1.39198 * 119.97867 * 0.59763 * 13 12 11 15 15 C 1.47812 * 120.34146 * 179.69896 * 14 13 12 16 16 C 1.39670 * 120.15874 * 64.70509 * 15 14 13 17 17 C 1.37889 * 119.87060 * 179.74774 * 16 15 14 18 18 C 1.38454 * 120.20494 * 0.54940 * 17 16 15 19 19 C 1.50703 * 119.83253 * 179.72204 * 18 17 16 20 20 C 1.53002 * 117.49561 * 299.72953 * 19 18 17 21 21 C 1.53000 * 60.00156 * 107.48649 * 20 19 18 22 22 C 1.38297 * 120.33957 * 359.45085 * 18 17 16 23 23 C 1.38224 * 120.11664 * 0.27018 * 22 18 17 24 24 F 1.35102 * 120.10140 * 179.97438 * 23 22 18 25 25 H 0.96997 * 120.00111 * 0.02562 * 1 2 3 26 26 H 1.08006 * 120.00519 * 0.03833 * 10 9 7 27 27 H 1.08001 * 119.65626 * 180.02562 * 11 10 9 28 28 H 1.07998 * 119.66067 * 179.97438 * 12 11 10 29 29 H 1.07991 * 120.01568 * 180.32527 * 13 12 11 30 30 H 1.07997 * 120.06479 * 0.04842 * 16 15 14 31 31 H 1.07993 * 119.89393 * 180.27084 * 17 16 15 32 32 H 1.08996 * 115.56688 * 154.03801 * 19 18 17 33 33 H 1.08998 * 117.50122 * 359.97438 * 20 19 18 34 34 H 1.08999 * 117.49663 * 214.97692 * 20 19 18 35 35 H 1.09001 * 117.49757 * 107.48662 * 21 20 19 36 36 H 1.08998 * 117.49978 * 252.48802 * 21 20 19 37 37 H 1.07999 * 119.94491 * 180.25559 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2418 1.6178 0.0000 4 1 3.0956 1.6963 -1.2125 5 1 1.2767 2.7465 -0.0006 6 1 3.0954 1.6966 1.2125 7 6 2.0081 -1.2130 0.0005 8 1 3.0587 -1.2299 0.2502 9 6 1.3421 -2.4110 -0.3244 10 6 0.1918 -2.3873 -1.1352 11 6 -0.4480 -3.5516 -1.4451 12 6 0.0230 -4.7684 -0.9678 13 6 1.1522 -4.8249 -0.1753 14 6 1.8236 -3.6534 0.1631 15 6 3.0295 -3.7039 1.0165 16 6 4.1851 -4.3428 0.5612 17 6 5.3083 -4.3818 1.3601 18 6 5.2902 -3.7997 2.6162 19 6 6.5205 -3.8528 3.4849 20 6 7.0498 -5.2339 3.8764 21 6 7.8084 -4.3856 2.8537 22 6 4.1506 -3.1649 3.0757 23 6 3.0188 -3.1127 2.2839 24 9 1.9056 -2.4929 2.7332 25 1 -0.4850 0.8400 -0.0004 26 1 -0.1841 -1.4476 -1.5121 27 1 -1.3300 -3.5272 -2.0681 28 1 -0.4968 -5.6800 -1.2232 29 1 1.5119 -5.7770 0.1855 30 1 4.2004 -4.8011 -0.4166 31 1 6.2034 -4.8719 1.0067 32 1 6.6134 -3.0518 4.2183 33 1 6.5079 -6.1041 3.5060 34 1 7.4909 -5.3415 4.8673 35 1 8.7486 -3.9351 3.1719 36 1 7.7661 -4.6979 1.8103 37 1 4.1449 -2.7094 4.0549 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244125236.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:41 Heat of formation + Delta-G solvation = 14.954984 kcal Electronic energy + Delta-G solvation = -21232.167307 eV Core-core repulsion = 18046.704458 eV Total energy + Delta-G solvation = -3185.462849 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.112 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -47.84239 -39.17642 -37.63791 -36.09537 -33.71278 -31.56401 -30.08167 -29.50130 -28.05574 -25.35848 -23.53547 -22.65121 -21.99209 -20.81802 -20.60398 -19.51404 -17.34489 -16.70582 -15.93925 -15.66459 -15.31404 -14.95098 -14.60752 -14.36121 -14.06467 -13.35368 -13.30902 -13.03739 -12.62634 -12.25848 -12.05266 -11.82117 -11.77153 -11.60711 -11.25461 -11.21751 -11.10882 -10.70309 -10.58724 -10.45994 -10.33450 -10.32031 -9.67111 -9.44206 -9.21658 -8.30654 -7.91061 -7.42687 -7.26851 -6.78419 -4.39510 1.67350 1.82847 2.76286 2.95954 3.04123 3.07823 3.23614 3.78820 3.90391 4.29595 4.56930 4.61075 4.88567 5.02495 5.16561 5.20353 5.39722 5.48451 5.60197 5.67960 5.77255 5.81081 5.97848 6.07328 6.11283 6.20061 6.34680 6.47961 6.57668 6.68224 6.85963 6.95702 6.98459 7.06465 7.20045 7.34413 7.53309 7.55334 7.86770 7.99846 8.07996 8.23276 8.57517 8.82666 8.92481 10.12605 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.015668 B = 0.006307 C = 0.004985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.682157 B = 4438.307425 C = 5615.841335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.079 3.921 3 Si 0.905 3.095 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.444 4.444 8 H 0.076 0.924 9 C 0.135 3.865 10 C -0.159 4.159 11 C -0.100 4.100 12 C -0.246 4.246 13 C -0.067 4.067 14 C -0.197 4.197 15 C -0.011 4.011 16 C -0.095 4.095 17 C -0.137 4.137 18 C -0.053 4.053 19 C -0.108 4.108 20 C -0.172 4.172 21 C -0.179 4.179 22 C -0.157 4.157 23 C 0.119 3.881 24 F -0.125 7.125 25 H 0.282 0.718 26 H 0.121 0.879 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.125 0.875 31 H 0.119 0.881 32 H 0.109 0.891 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.830 -4.842 4.087 11.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.140 4.140 3 Si 0.729 3.271 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.473 4.473 8 H 0.094 0.906 9 C 0.132 3.868 10 C -0.178 4.178 11 C -0.119 4.119 12 C -0.266 4.266 13 C -0.086 4.086 14 C -0.198 4.198 15 C -0.012 4.012 16 C -0.113 4.113 17 C -0.155 4.155 18 C -0.053 4.053 19 C -0.126 4.126 20 C -0.209 4.209 21 C -0.215 4.215 22 C -0.176 4.176 23 C 0.100 3.900 24 F -0.103 7.103 25 H 0.093 0.907 26 H 0.139 0.861 27 H 0.105 0.895 28 H 0.106 0.894 29 H 0.107 0.893 30 H 0.143 0.857 31 H 0.137 0.863 32 H 0.128 0.872 33 H 0.114 0.886 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.117 0.883 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 9.567 -4.637 4.124 11.403 hybrid contribution 0.046 0.961 0.159 0.975 sum 9.612 -3.676 4.283 11.147 Atomic orbital electron populations 1.69782 1.07595 1.29457 1.34091 1.25923 0.94710 1.01329 0.92069 0.86401 0.80282 0.80221 0.80181 1.18682 1.20161 1.18813 1.19454 0.97239 0.90856 1.39741 0.90555 1.17480 0.90639 0.90830 0.87825 1.21091 0.98696 0.97067 1.00987 1.20479 0.98434 0.93403 0.99581 1.20237 1.01114 0.96293 1.08916 1.20496 0.95359 0.95330 0.97369 1.18389 0.99568 0.94224 1.07668 1.18888 0.94819 0.95710 0.91808 1.21161 0.91488 0.99273 0.99421 1.20821 0.98366 1.02184 0.94168 1.18715 0.93024 0.99249 0.94305 1.20947 0.92418 0.97877 1.01391 1.23012 1.03724 0.94448 0.99752 1.23052 0.95237 1.04226 0.99013 1.20714 0.92363 1.04028 1.00538 1.17862 0.83288 0.95834 0.93020 1.91525 1.50310 1.79815 1.88654 0.90663 0.86134 0.89500 0.89446 0.89331 0.85726 0.86340 0.87248 0.88573 0.88797 0.88746 0.88261 0.85769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.22 10.87 55.55 0.60 -19.61 16 2 C 0.08 1.98 5.18 -17.32 -0.09 1.89 16 3 Si 0.90 18.94 29.59 -169.99 -5.03 13.91 16 4 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 5 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 6 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 7 C -0.44 -11.72 7.51 -37.90 -0.28 -12.00 16 8 H 0.08 2.01 7.09 -52.49 -0.37 1.63 16 9 C 0.13 3.58 5.47 -106.56 -0.58 2.99 16 10 C -0.16 -4.14 8.63 -39.29 -0.34 -4.48 16 11 C -0.10 -2.37 9.96 -39.98 -0.40 -2.77 16 12 C -0.25 -5.57 10.03 -39.38 -0.40 -5.96 16 13 C -0.07 -1.54 9.73 -39.29 -0.38 -1.92 16 14 C -0.20 -4.80 5.06 -104.23 -0.53 -5.33 16 15 C -0.01 -0.25 4.39 -104.84 -0.46 -0.71 16 16 C -0.10 -1.75 9.74 -39.17 -0.38 -2.13 16 17 C -0.14 -2.16 9.28 -39.63 -0.37 -2.53 16 18 C -0.05 -0.83 5.62 -104.52 -0.59 -1.41 16 19 C -0.11 -1.33 6.04 -91.77 -0.55 -1.89 16 20 C -0.17 -1.78 10.16 -26.73 -0.27 -2.05 16 21 C -0.18 -1.83 9.85 -26.73 -0.26 -2.09 16 22 C -0.16 -2.81 9.70 -39.56 -0.38 -3.20 16 23 C 0.12 2.57 6.50 -38.98 -0.25 2.32 16 24 F -0.12 -3.02 16.16 2.25 0.04 -2.98 16 25 H 0.28 6.63 8.29 -40.82 -0.34 6.29 16 26 H 0.12 3.20 6.12 -52.48 -0.32 2.88 16 27 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 28 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 29 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 30 H 0.12 2.12 8.06 -52.49 -0.42 1.69 16 31 H 0.12 1.53 5.99 -52.49 -0.31 1.21 16 32 H 0.11 1.25 8.14 -51.93 -0.42 0.82 16 33 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.10 1.01 6.16 -51.93 -0.32 0.69 16 37 H 0.12 1.96 8.06 -52.49 -0.42 1.54 16 LS Contribution 317.29 15.07 4.78 4.78 Total: -1.00 -27.84 317.29 -10.40 -38.23 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -4.27 Total: 6.94 kcal Atomic # 6 Polarization: -34.74 SS G_CDS: -6.52 Total: -41.26 kcal Atomic # 7 Polarization: -20.22 SS G_CDS: 0.60 Total: -19.61 kcal Atomic # 9 Polarization: -3.02 SS G_CDS: 0.04 Total: -2.98 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.03 Total: 13.91 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -27.84 -10.40 -38.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244125236.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.187 kcal (2) G-P(sol) polarization free energy of solvation -27.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds