Wall clock time and date at job start Tue Mar 31 2020 05:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30777 * 1 3 3 Si 1.86802 * 119.99982 * 2 1 4 4 H 1.48502 * 109.46827 * 239.99482 * 3 2 1 5 5 H 1.48506 * 109.46967 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47545 * 119.99462 * 3 2 1 7 7 C 1.40064 * 120.00164 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00333 * 195.48151 * 7 2 1 9 9 C 1.40867 * 120.00021 * 15.47262 * 7 2 1 10 10 C 1.40754 * 120.32951 * 25.28399 * 9 7 2 11 11 C 1.36418 * 119.99125 * 180.02562 * 10 9 7 12 12 C 1.38939 * 120.69036 * 0.02562 * 11 10 9 13 13 C 1.38067 * 120.67972 * 359.67987 * 12 11 10 14 14 C 1.39198 * 119.97867 * 0.59763 * 13 12 11 15 15 C 1.47812 * 120.34146 * 179.69896 * 14 13 12 16 16 C 1.39670 * 120.15874 * 64.70509 * 15 14 13 17 17 C 1.37889 * 119.87060 * 179.74774 * 16 15 14 18 18 C 1.38454 * 120.20494 * 0.54940 * 17 16 15 19 19 C 1.50703 * 119.83253 * 179.72204 * 18 17 16 20 20 C 1.53002 * 117.49561 * 299.72953 * 19 18 17 21 21 C 1.53000 * 60.00156 * 107.48649 * 20 19 18 22 22 C 1.38297 * 120.33957 * 359.45085 * 18 17 16 23 23 C 1.38224 * 120.11664 * 0.27018 * 22 18 17 24 24 F 1.35102 * 120.10140 * 179.97438 * 23 22 18 25 25 H 0.96997 * 120.00111 * 0.02562 * 1 2 3 26 26 H 1.08006 * 120.00519 * 0.03833 * 10 9 7 27 27 H 1.08001 * 119.65626 * 180.02562 * 11 10 9 28 28 H 1.07998 * 119.66067 * 179.97438 * 12 11 10 29 29 H 1.07991 * 120.01568 * 180.32527 * 13 12 11 30 30 H 1.07997 * 120.06479 * 0.04842 * 16 15 14 31 31 H 1.07993 * 119.89393 * 180.27084 * 17 16 15 32 32 H 1.08996 * 115.56688 * 154.03801 * 19 18 17 33 33 H 1.08998 * 117.50122 * 359.97438 * 20 19 18 34 34 H 1.08999 * 117.49663 * 214.97692 * 20 19 18 35 35 H 1.09001 * 117.49757 * 107.48662 * 21 20 19 36 36 H 1.08998 * 117.49978 * 252.48802 * 21 20 19 37 37 H 1.07999 * 119.94491 * 180.25559 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2418 1.6178 0.0000 4 1 3.0956 1.6963 -1.2125 5 1 1.2767 2.7465 -0.0006 6 1 3.0954 1.6966 1.2125 7 6 2.0081 -1.2130 0.0005 8 1 3.0587 -1.2299 0.2502 9 6 1.3421 -2.4110 -0.3244 10 6 0.1918 -2.3873 -1.1352 11 6 -0.4480 -3.5516 -1.4451 12 6 0.0230 -4.7684 -0.9678 13 6 1.1522 -4.8249 -0.1753 14 6 1.8236 -3.6534 0.1631 15 6 3.0295 -3.7039 1.0165 16 6 4.1851 -4.3428 0.5612 17 6 5.3083 -4.3818 1.3601 18 6 5.2902 -3.7997 2.6162 19 6 6.5205 -3.8528 3.4849 20 6 7.0498 -5.2339 3.8764 21 6 7.8084 -4.3856 2.8537 22 6 4.1506 -3.1649 3.0757 23 6 3.0188 -3.1127 2.2839 24 9 1.9056 -2.4929 2.7332 25 1 -0.4850 0.8400 -0.0004 26 1 -0.1841 -1.4476 -1.5121 27 1 -1.3300 -3.5272 -2.0681 28 1 -0.4968 -5.6800 -1.2232 29 1 1.5119 -5.7770 0.1855 30 1 4.2004 -4.8011 -0.4166 31 1 6.2034 -4.8719 1.0067 32 1 6.6134 -3.0518 4.2183 33 1 6.5079 -6.1041 3.5060 34 1 7.4909 -5.3415 4.8673 35 1 8.7486 -3.9351 3.1719 36 1 7.7661 -4.6979 1.8103 37 1 4.1449 -2.7094 4.0549 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244125236.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:40 Heat of formation + Delta-G solvation = 4.088308 kcal Electronic energy + Delta-G solvation = -21232.638521 eV Core-core repulsion = 18046.704458 eV Total energy + Delta-G solvation = -3185.934064 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.112 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.56866 -40.51538 -39.28478 -37.29022 -35.58449 -33.13231 -31.65193 -31.24486 -29.65390 -27.20529 -24.91689 -23.83954 -23.03515 -22.63628 -22.09247 -20.99049 -19.21876 -18.09318 -17.32817 -17.31374 -16.89069 -16.42729 -16.30575 -15.90408 -15.27527 -15.16168 -14.89184 -14.43286 -14.39662 -13.89564 -13.51740 -13.32977 -13.21187 -12.95520 -12.90575 -12.80813 -12.51037 -12.21546 -12.13739 -11.88282 -11.66991 -11.32950 -11.22069 -11.17885 -11.08256 -9.73679 -9.50696 -9.32705 -8.97759 -8.62639 -6.33837 0.23339 0.38476 0.97115 1.11595 1.31765 1.42576 1.50338 2.16188 2.61122 2.73315 3.18379 3.41131 3.67187 3.84876 3.97086 4.05694 4.12241 4.19015 4.23846 4.42979 4.46450 4.57152 4.60513 4.83348 4.86647 4.95822 5.10152 5.13996 5.17712 5.26226 5.29719 5.34809 5.36539 5.43352 5.60157 5.63006 5.69148 5.96534 6.07491 6.12586 6.20749 6.35525 6.66769 6.91350 7.02566 8.29401 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.015668 B = 0.006307 C = 0.004985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.682157 B = 4438.307425 C = 5615.841335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.038 3.962 3 Si 0.970 3.030 4 H -0.256 1.256 5 H -0.263 1.263 6 H -0.265 1.265 7 C -0.469 4.469 8 H 0.065 0.935 9 C 0.102 3.898 10 C -0.188 4.188 11 C -0.107 4.107 12 C -0.243 4.243 13 C -0.078 4.078 14 C -0.200 4.200 15 C -0.046 4.046 16 C -0.096 4.096 17 C -0.126 4.126 18 C -0.038 4.038 19 C -0.134 4.134 20 C -0.160 4.160 21 C -0.166 4.166 22 C -0.161 4.161 23 C 0.085 3.915 24 F -0.153 7.153 25 H 0.288 0.712 26 H 0.104 0.896 27 H 0.110 0.890 28 H 0.120 0.880 29 H 0.114 0.886 30 H 0.135 0.865 31 H 0.156 0.844 32 H 0.119 0.881 33 H 0.093 0.907 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.103 0.897 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.592 -6.097 4.667 14.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.178 4.178 3 Si 0.791 3.209 4 H -0.181 1.181 5 H -0.187 1.187 6 H -0.189 1.189 7 C -0.498 4.498 8 H 0.083 0.917 9 C 0.100 3.900 10 C -0.208 4.208 11 C -0.126 4.126 12 C -0.262 4.262 13 C -0.096 4.096 14 C -0.202 4.202 15 C -0.047 4.047 16 C -0.114 4.114 17 C -0.144 4.144 18 C -0.038 4.038 19 C -0.152 4.152 20 C -0.197 4.197 21 C -0.202 4.202 22 C -0.179 4.179 23 C 0.066 3.934 24 F -0.132 7.132 25 H 0.099 0.901 26 H 0.122 0.878 27 H 0.128 0.872 28 H 0.138 0.862 29 H 0.132 0.868 30 H 0.153 0.847 31 H 0.173 0.827 32 H 0.137 0.863 33 H 0.112 0.888 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.121 0.879 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 12.326 -5.910 4.699 14.455 hybrid contribution -0.722 1.157 0.033 1.364 sum 11.604 -4.753 4.732 13.403 Atomic orbital electron populations 1.69838 1.08843 1.30511 1.35224 1.26700 0.95458 1.04277 0.91355 0.85433 0.79110 0.76333 0.80054 1.18063 1.18717 1.18909 1.19485 0.96831 0.91953 1.41540 0.91684 1.17852 0.91424 0.92088 0.88645 1.21097 0.99797 0.97409 1.02455 1.20771 0.98961 0.93159 0.99672 1.20643 1.00808 0.97034 1.07722 1.20869 0.95379 0.96049 0.97325 1.18798 1.00416 0.93984 1.06974 1.18946 0.95360 0.98369 0.92046 1.21325 0.91203 0.98636 1.00232 1.21200 0.98540 1.01087 0.93574 1.19148 0.93437 0.96706 0.94554 1.21005 0.91950 0.99973 1.02252 1.23107 1.02788 0.92833 1.00979 1.23191 0.94754 1.03031 0.99264 1.20954 0.91884 1.04235 1.00851 1.18261 0.83749 0.97272 0.94131 1.91441 1.52001 1.80713 1.89022 0.90109 0.87777 0.87213 0.86229 0.86776 0.84670 0.82660 0.86349 0.88817 0.86816 0.86785 0.87907 0.84242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.19 10.87 21.85 0.24 -43.96 16 2 C 0.04 1.97 5.18 85.29 0.44 2.41 16 3 Si 0.97 39.95 29.59 68.60 2.03 41.98 16 4 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 5 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 6 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 7 C -0.47 -26.02 7.51 23.36 0.18 -25.85 16 8 H 0.06 3.61 7.09 -2.91 -0.02 3.59 16 9 C 0.10 5.68 5.47 -21.12 -0.12 5.57 16 10 C -0.19 -10.23 8.63 22.46 0.19 -10.03 16 11 C -0.11 -5.13 9.96 22.01 0.22 -4.92 16 12 C -0.24 -10.80 10.03 22.40 0.22 -10.58 16 13 C -0.08 -3.56 9.73 22.46 0.22 -3.34 16 14 C -0.20 -10.04 5.06 -19.61 -0.10 -10.14 16 15 C -0.05 -2.06 4.39 -20.01 -0.09 -2.14 16 16 C -0.10 -3.42 9.74 22.53 0.22 -3.20 16 17 C -0.13 -3.63 9.28 22.24 0.21 -3.43 16 18 C -0.04 -1.11 5.62 -19.80 -0.11 -1.23 16 19 C -0.13 -2.81 6.04 -11.54 -0.07 -2.88 16 20 C -0.16 -2.61 10.16 30.59 0.31 -2.30 16 21 C -0.17 -2.62 9.85 30.60 0.30 -2.32 16 22 C -0.16 -5.67 9.70 22.28 0.22 -5.45 16 23 C 0.08 3.77 6.50 22.66 0.15 3.91 16 24 F -0.15 -7.84 16.16 44.97 0.73 -7.12 16 25 H 0.29 14.10 8.29 -92.71 -0.77 13.34 16 26 H 0.10 5.87 6.12 -2.91 -0.02 5.86 16 27 H 0.11 4.60 8.06 -2.91 -0.02 4.58 16 28 H 0.12 4.48 8.06 -2.91 -0.02 4.46 16 29 H 0.11 4.50 8.06 -2.92 -0.02 4.48 16 30 H 0.14 4.42 8.06 -2.91 -0.02 4.40 16 31 H 0.16 3.31 5.99 -2.91 -0.02 3.29 16 32 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.10 1.57 6.16 -2.39 -0.01 1.55 16 37 H 0.14 4.34 8.06 -2.91 -0.02 4.31 16 Total: -1.00 -63.95 317.29 6.47 -57.48 By element: Atomic # 1 Polarization: 26.45 SS G_CDS: 1.09 Total: 27.53 kcal Atomic # 6 Polarization: -78.30 SS G_CDS: 2.39 Total: -75.91 kcal Atomic # 7 Polarization: -44.19 SS G_CDS: 0.24 Total: -43.96 kcal Atomic # 9 Polarization: -7.84 SS G_CDS: 0.73 Total: -7.12 kcal Atomic # 14 Polarization: 39.95 SS G_CDS: 2.03 Total: 41.98 kcal Total: -63.95 6.47 -57.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244125236.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.564 kcal (2) G-P(sol) polarization free energy of solvation -63.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds