Wall clock time and date at job start Tue Mar 31 2020 05:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30790 * 1 3 3 Si 1.86801 * 120.00213 * 2 1 4 4 H 1.48505 * 109.47229 * 272.61064 * 3 2 1 5 5 H 1.48500 * 109.46884 * 32.60642 * 3 2 1 6 6 H 1.48490 * 109.47291 * 152.60765 * 3 2 1 7 7 C 1.40030 * 119.99979 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99783 * 347.74521 * 7 2 1 9 9 C 1.41047 * 120.00171 * 167.74190 * 7 2 1 10 10 C 1.41299 * 120.55711 * 148.95589 * 9 7 2 11 11 C 1.36606 * 118.41974 * 179.74629 * 10 9 7 12 12 C 1.39899 * 119.45968 * 0.52167 * 11 10 9 13 13 C 1.47974 * 119.44651 * 179.74321 * 12 11 10 14 14 C 1.39625 * 120.14529 * 5.65709 * 13 12 11 15 15 C 1.37912 * 119.84970 * 179.97438 * 14 13 12 16 16 C 1.38404 * 120.15083 * 359.97438 * 15 14 13 17 17 C 1.38375 * 120.28862 * 359.72590 * 16 15 14 18 18 C 1.37953 * 120.14529 * 0.55244 * 17 16 15 19 19 C 1.50703 * 120.07284 * 179.71932 * 18 17 16 20 20 C 1.50694 * 109.46754 * 98.23545 * 19 18 17 21 21 N 1.34783 * 119.99909 * 179.72090 * 20 19 18 22 22 O 1.21279 * 120.00433 * 359.97438 * 20 19 18 23 23 N 1.33015 * 121.10267 * 359.46662 * 12 11 10 24 24 C 1.31265 * 121.72560 * 0.27228 * 23 12 11 25 25 H 0.97001 * 119.99717 * 359.97438 * 1 2 3 26 26 H 1.08001 * 120.79109 * 0.02895 * 10 9 7 27 27 H 1.07998 * 120.27180 * 180.26524 * 11 10 9 28 28 H 1.08003 * 120.07133 * 359.97438 * 14 13 12 29 29 H 1.08002 * 119.92073 * 179.97438 * 15 14 13 30 30 H 1.07997 * 119.85934 * 180.02562 * 16 15 14 31 31 H 1.07997 * 119.92623 * 180.27056 * 17 16 15 32 32 H 1.08992 * 109.46918 * 338.23325 * 19 18 17 33 33 H 1.09006 * 109.47042 * 218.23196 * 19 18 17 34 34 H 0.96996 * 120.00188 * 180.27131 * 21 20 19 35 35 H 0.96996 * 119.99964 * 0.27914 * 21 20 19 36 36 H 1.07999 * 119.79807 * 179.97438 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2420 1.6177 0.0000 4 1 2.4343 2.0783 -1.3987 5 1 1.4681 2.6361 0.7545 6 1 3.5659 1.4249 0.6441 7 6 2.0080 -1.2127 -0.0005 8 1 1.4865 -2.1374 0.1976 9 6 3.3944 -1.2266 -0.2599 10 6 4.2261 -2.2039 0.3314 11 6 5.5618 -2.1799 0.0460 12 6 6.0655 -1.1916 -0.8065 13 6 7.5133 -1.1624 -1.1109 14 6 8.3480 -2.1812 -0.6475 15 6 9.6963 -2.1482 -0.9353 16 6 10.2225 -1.1085 -1.6821 17 6 9.3998 -0.0989 -2.1496 18 6 8.0503 -0.1169 -1.8640 19 6 7.1568 0.9869 -2.3687 20 6 6.4596 0.5336 -3.6254 21 7 5.6004 1.3597 -4.2547 22 8 6.6680 -0.5761 -4.0680 23 7 5.2640 -0.2810 -1.3521 24 6 3.9734 -0.2654 -1.1129 25 1 -0.4850 0.8401 0.0004 26 1 3.8149 -2.9548 0.9898 27 1 6.2242 -2.9153 0.4781 28 1 7.9385 -2.9934 -0.0650 29 1 10.3431 -2.9355 -0.5771 30 1 11.2790 -1.0876 -1.9051 31 1 9.8159 0.7073 -2.7355 32 1 7.7575 1.8703 -2.5848 33 1 6.4142 1.2294 -1.6085 34 1 5.1487 1.0666 -5.0614 35 1 5.4340 2.2474 -3.9010 36 1 3.3515 0.4886 -1.5724 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245446132.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:20 Heat of formation + Delta-G solvation = 13.908093 kcal Electronic energy + Delta-G solvation = -21626.226797 eV Core-core repulsion = 18460.638512 eV Total energy + Delta-G solvation = -3165.588284 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.81005 -38.44929 -37.81709 -34.20872 -33.12531 -32.53276 -31.81960 -31.16624 -29.37822 -27.26801 -25.39043 -22.93184 -22.25244 -21.29875 -20.55927 -19.66967 -17.82448 -17.07218 -16.54049 -16.17628 -15.87288 -15.23330 -14.99456 -14.39337 -13.98266 -13.89476 -13.60612 -13.45916 -13.05446 -12.88467 -12.53937 -12.39980 -12.06891 -11.91794 -11.21984 -11.18430 -11.10873 -10.81002 -10.72224 -10.45764 -10.10881 -9.56816 -9.41687 -9.17137 -8.79952 -8.66513 -8.33788 -8.13463 -7.38624 -7.22846 -4.72596 1.45905 1.83694 2.48535 2.58594 2.92555 3.05144 3.12138 3.37052 3.73069 4.01356 4.25035 4.57491 5.14325 5.19015 5.27792 5.30577 5.36760 5.62527 5.65809 5.79625 5.86497 5.94327 6.13828 6.21226 6.28202 6.41271 6.47298 6.57261 6.77320 6.81007 6.90199 7.04256 7.10941 7.24744 7.26396 7.44745 7.50865 7.76021 7.84533 7.98450 8.26513 8.41187 8.87543 9.20385 9.76876 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.020412 B = 0.006298 C = 0.005304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.393826 B = 4444.576869 C = 5277.455095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.078 3.922 3 Si 0.915 3.085 4 H -0.263 1.263 5 H -0.287 1.287 6 H -0.244 1.244 7 C -0.417 4.417 8 H 0.096 0.904 9 C 0.046 3.954 10 C -0.178 4.178 11 C -0.104 4.104 12 C 0.006 3.994 13 C 0.027 3.973 14 C -0.130 4.130 15 C -0.118 4.118 16 C -0.145 4.145 17 C -0.110 4.110 18 C -0.059 4.059 19 C -0.097 4.097 20 C 0.548 3.452 21 N -0.863 5.863 22 O -0.545 6.545 23 N -0.436 5.436 24 C -0.028 4.028 25 H 0.291 0.709 26 H 0.112 0.888 27 H 0.109 0.891 28 H 0.120 0.880 29 H 0.115 0.885 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.074 0.926 33 H 0.133 0.867 34 H 0.394 0.606 35 H 0.396 0.604 36 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.949 4.670 -1.938 12.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.143 4.143 3 Si 0.741 3.259 4 H -0.189 1.189 5 H -0.214 1.214 6 H -0.167 1.167 7 C -0.445 4.445 8 H 0.114 0.886 9 C 0.041 3.959 10 C -0.203 4.203 11 C -0.124 4.124 12 C -0.127 4.127 13 C 0.026 3.974 14 C -0.149 4.149 15 C -0.136 4.136 16 C -0.163 4.163 17 C -0.128 4.128 18 C -0.061 4.061 19 C -0.137 4.137 20 C 0.334 3.666 21 N -0.426 5.426 22 O -0.421 6.421 23 N -0.143 5.143 24 C -0.192 4.192 25 H 0.102 0.898 26 H 0.130 0.870 27 H 0.127 0.873 28 H 0.138 0.862 29 H 0.133 0.867 30 H 0.131 0.869 31 H 0.131 0.869 32 H 0.093 0.907 33 H 0.150 0.850 34 H 0.224 0.776 35 H 0.223 0.777 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 11.269 4.594 -2.581 12.440 hybrid contribution -0.679 0.309 0.386 0.840 sum 10.590 4.903 -2.195 11.875 Atomic orbital electron populations 1.69619 1.08107 1.30936 1.32755 1.26293 0.94963 1.02039 0.91004 0.86277 0.80908 0.79217 0.79455 1.18950 1.21400 1.16699 1.19567 0.91052 0.95858 1.38027 0.88576 1.18688 0.94277 0.92472 0.90463 1.21072 0.92698 1.03004 1.03552 1.21280 0.95840 0.97493 0.97779 1.18827 0.91451 0.97918 1.04536 1.18444 0.91239 0.93103 0.94644 1.21118 0.93342 0.98713 1.01754 1.20886 0.94987 0.98320 0.99440 1.20922 0.99030 0.95627 1.00760 1.20823 0.93120 0.98917 0.99943 1.19294 0.92966 0.95795 0.98008 1.20795 0.99192 0.96336 0.97366 1.20224 0.78101 0.84358 0.83940 1.43794 1.48269 1.19161 1.31384 1.90685 1.64219 1.20263 1.66898 1.67038 1.05074 1.21821 1.20415 1.22453 0.90880 1.03161 1.02721 0.89810 0.86985 0.87321 0.86206 0.86743 0.86938 0.86931 0.90734 0.85000 0.77638 0.77728 0.85174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.53 13.93 55.55 0.77 -18.75 16 2 C 0.08 1.90 5.47 -17.32 -0.09 1.80 16 3 Si 0.92 19.14 24.40 -169.99 -4.15 14.99 16 4 H -0.26 -5.23 6.67 56.52 0.38 -4.85 16 5 H -0.29 -5.77 7.11 56.52 0.40 -5.37 16 6 H -0.24 -5.33 6.66 56.52 0.38 -4.95 16 7 C -0.42 -10.53 9.62 -37.85 -0.36 -10.90 16 8 H 0.10 2.53 8.06 -52.49 -0.42 2.11 16 9 C 0.05 1.12 5.15 -106.64 -0.55 0.57 16 10 C -0.18 -3.99 9.87 -39.01 -0.39 -4.38 16 11 C -0.10 -2.19 9.37 -39.55 -0.37 -2.56 16 12 C 0.01 0.13 6.68 -82.74 -0.55 -0.42 16 13 C 0.03 0.53 5.83 -104.89 -0.61 -0.08 16 14 C -0.13 -2.25 9.41 -39.18 -0.37 -2.62 16 15 C -0.12 -1.77 10.03 -39.64 -0.40 -2.16 16 16 C -0.14 -2.11 10.04 -39.47 -0.40 -2.51 16 17 C -0.11 -1.74 9.66 -39.64 -0.38 -2.12 16 18 C -0.06 -1.08 4.43 -104.22 -0.46 -1.55 16 19 C -0.10 -1.63 5.11 -29.04 -0.15 -1.78 16 20 C 0.55 10.00 6.49 -10.99 -0.07 9.93 16 21 N -0.86 -12.10 8.87 31.22 0.28 -11.82 16 22 O -0.54 -12.33 16.83 5.56 0.09 -12.24 16 23 N -0.44 -9.81 4.95 -9.10 -0.05 -9.86 16 24 C -0.03 -0.66 8.19 -16.77 -0.14 -0.80 16 25 H 0.29 6.44 8.30 -40.82 -0.34 6.11 16 26 H 0.11 2.30 8.06 -52.49 -0.42 1.87 16 27 H 0.11 1.95 6.19 -52.49 -0.32 1.62 16 28 H 0.12 1.87 6.19 -52.48 -0.33 1.55 16 29 H 0.11 1.37 8.06 -52.49 -0.42 0.94 16 30 H 0.11 1.31 8.06 -52.49 -0.42 0.88 16 31 H 0.11 1.48 8.05 -52.49 -0.42 1.06 16 32 H 0.07 0.97 8.02 -51.93 -0.42 0.56 16 33 H 0.13 2.39 5.75 -51.93 -0.30 2.10 16 34 H 0.39 5.12 8.93 -40.82 -0.36 4.75 16 35 H 0.40 4.33 8.83 -40.82 -0.36 3.97 16 36 H 0.13 2.98 4.39 -52.49 -0.23 2.75 16 LS Contribution 301.66 15.07 4.55 4.55 Total: -1.00 -30.18 301.66 -7.41 -37.60 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: -3.62 Total: 15.11 kcal Atomic # 6 Polarization: -14.28 SS G_CDS: -5.29 Total: -19.57 kcal Atomic # 7 Polarization: -41.44 SS G_CDS: 1.01 Total: -40.43 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: 0.09 Total: -12.24 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -4.15 Total: 14.99 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.18 -7.41 -37.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245446132.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.505 kcal (2) G-P(sol) polarization free energy of solvation -30.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds