Wall clock time and date at job start Tue Mar 31 2020 05:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30790 * 1 3 3 Si 1.86801 * 120.00213 * 2 1 4 4 H 1.48505 * 109.47229 * 272.61064 * 3 2 1 5 5 H 1.48500 * 109.46884 * 32.60642 * 3 2 1 6 6 H 1.48490 * 109.47291 * 152.60765 * 3 2 1 7 7 C 1.40030 * 119.99979 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99783 * 347.74521 * 7 2 1 9 9 C 1.41047 * 120.00171 * 167.74190 * 7 2 1 10 10 C 1.41299 * 120.55711 * 148.95589 * 9 7 2 11 11 C 1.36606 * 118.41974 * 179.74629 * 10 9 7 12 12 C 1.39899 * 119.45968 * 0.52167 * 11 10 9 13 13 C 1.47974 * 119.44651 * 179.74321 * 12 11 10 14 14 C 1.39625 * 120.14529 * 5.65709 * 13 12 11 15 15 C 1.37912 * 119.84970 * 179.97438 * 14 13 12 16 16 C 1.38404 * 120.15083 * 359.97438 * 15 14 13 17 17 C 1.38375 * 120.28862 * 359.72590 * 16 15 14 18 18 C 1.37953 * 120.14529 * 0.55244 * 17 16 15 19 19 C 1.50703 * 120.07284 * 179.71932 * 18 17 16 20 20 C 1.50694 * 109.46754 * 98.23545 * 19 18 17 21 21 N 1.34783 * 119.99909 * 179.72090 * 20 19 18 22 22 O 1.21279 * 120.00433 * 359.97438 * 20 19 18 23 23 N 1.33015 * 121.10267 * 359.46662 * 12 11 10 24 24 C 1.31265 * 121.72560 * 0.27228 * 23 12 11 25 25 H 0.97001 * 119.99717 * 359.97438 * 1 2 3 26 26 H 1.08001 * 120.79109 * 0.02895 * 10 9 7 27 27 H 1.07998 * 120.27180 * 180.26524 * 11 10 9 28 28 H 1.08003 * 120.07133 * 359.97438 * 14 13 12 29 29 H 1.08002 * 119.92073 * 179.97438 * 15 14 13 30 30 H 1.07997 * 119.85934 * 180.02562 * 16 15 14 31 31 H 1.07997 * 119.92623 * 180.27056 * 17 16 15 32 32 H 1.08992 * 109.46918 * 338.23325 * 19 18 17 33 33 H 1.09006 * 109.47042 * 218.23196 * 19 18 17 34 34 H 0.96996 * 120.00188 * 180.27131 * 21 20 19 35 35 H 0.96996 * 119.99964 * 0.27914 * 21 20 19 36 36 H 1.07999 * 119.79807 * 179.97438 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2420 1.6177 0.0000 4 1 2.4343 2.0783 -1.3987 5 1 1.4681 2.6361 0.7545 6 1 3.5659 1.4249 0.6441 7 6 2.0080 -1.2127 -0.0005 8 1 1.4865 -2.1374 0.1976 9 6 3.3944 -1.2266 -0.2599 10 6 4.2261 -2.2039 0.3314 11 6 5.5618 -2.1799 0.0460 12 6 6.0655 -1.1916 -0.8065 13 6 7.5133 -1.1624 -1.1109 14 6 8.3480 -2.1812 -0.6475 15 6 9.6963 -2.1482 -0.9353 16 6 10.2225 -1.1085 -1.6821 17 6 9.3998 -0.0989 -2.1496 18 6 8.0503 -0.1169 -1.8640 19 6 7.1568 0.9869 -2.3687 20 6 6.4596 0.5336 -3.6254 21 7 5.6004 1.3597 -4.2547 22 8 6.6680 -0.5761 -4.0680 23 7 5.2640 -0.2810 -1.3521 24 6 3.9734 -0.2654 -1.1129 25 1 -0.4850 0.8401 0.0004 26 1 3.8149 -2.9548 0.9898 27 1 6.2242 -2.9153 0.4781 28 1 7.9385 -2.9934 -0.0650 29 1 10.3431 -2.9355 -0.5771 30 1 11.2790 -1.0876 -1.9051 31 1 9.8159 0.7073 -2.7355 32 1 7.7575 1.8703 -2.5848 33 1 6.4142 1.2294 -1.6085 34 1 5.1487 1.0666 -5.0614 35 1 5.4340 2.2474 -3.9010 36 1 3.3515 0.4886 -1.5724 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245446132.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:20 Heat of formation + Delta-G solvation = -6.295881 kcal Electronic energy + Delta-G solvation = -21627.102907 eV Core-core repulsion = 18460.638512 eV Total energy + Delta-G solvation = -3166.464394 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.28182 -40.02713 -39.18889 -35.95861 -34.49483 -33.96099 -33.34222 -32.77725 -30.90143 -28.58185 -27.04110 -24.55961 -23.79866 -22.68351 -22.09482 -21.00892 -19.62957 -18.41187 -17.99649 -17.53998 -17.39067 -16.71285 -16.44053 -15.94917 -15.51748 -15.37927 -15.03896 -14.96624 -14.68752 -14.42884 -14.01963 -13.79893 -13.59676 -13.29933 -12.88503 -12.80311 -12.62325 -12.43119 -12.09579 -11.80633 -11.76926 -11.25936 -10.88469 -10.47167 -10.46631 -10.26365 -9.86353 -9.55301 -9.02897 -8.95637 -6.59715 -0.01129 0.60395 0.71985 1.00695 1.23125 1.39566 1.44125 1.97325 2.03524 2.53053 2.83080 3.16662 3.51858 3.63663 3.90144 4.05367 4.12692 4.32232 4.39136 4.44224 4.46495 4.52375 4.68030 4.77730 4.82388 4.96520 5.01522 5.07516 5.24783 5.37485 5.46392 5.53823 5.69880 5.73971 5.91934 5.97927 6.06769 6.10309 6.25365 6.46521 6.58122 6.65985 7.43409 7.58709 8.04386 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.020412 B = 0.006298 C = 0.005304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.393826 B = 4444.576869 C = 5277.455095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.048 3.952 3 Si 0.966 3.034 4 H -0.245 1.245 5 H -0.272 1.272 6 H -0.260 1.260 7 C -0.456 4.456 8 H 0.065 0.935 9 C 0.028 3.972 10 C -0.184 4.184 11 C -0.111 4.111 12 C 0.015 3.985 13 C -0.021 4.021 14 C -0.136 4.136 15 C -0.120 4.120 16 C -0.131 4.131 17 C -0.119 4.119 18 C -0.073 4.073 19 C -0.098 4.098 20 C 0.543 3.457 21 N -0.846 5.846 22 O -0.596 6.596 23 N -0.436 5.436 24 C -0.041 4.041 25 H 0.300 0.700 26 H 0.123 0.877 27 H 0.142 0.858 28 H 0.130 0.870 29 H 0.149 0.851 30 H 0.150 0.850 31 H 0.141 0.859 32 H 0.114 0.886 33 H 0.118 0.882 34 H 0.400 0.600 35 H 0.412 0.588 36 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.774 5.777 -2.459 16.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.169 4.169 3 Si 0.789 3.211 4 H -0.170 1.170 5 H -0.198 1.198 6 H -0.185 1.185 7 C -0.485 4.485 8 H 0.083 0.917 9 C 0.023 3.977 10 C -0.210 4.210 11 C -0.131 4.131 12 C -0.121 4.121 13 C -0.021 4.021 14 C -0.154 4.154 15 C -0.138 4.138 16 C -0.150 4.150 17 C -0.137 4.137 18 C -0.074 4.074 19 C -0.137 4.137 20 C 0.330 3.670 21 N -0.409 5.409 22 O -0.476 6.476 23 N -0.144 5.144 24 C -0.203 4.203 25 H 0.111 0.889 26 H 0.141 0.859 27 H 0.159 0.841 28 H 0.147 0.853 29 H 0.167 0.833 30 H 0.168 0.832 31 H 0.158 0.842 32 H 0.132 0.868 33 H 0.135 0.865 34 H 0.230 0.770 35 H 0.242 0.758 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 15.044 5.754 -3.113 16.405 hybrid contribution -1.453 -0.137 0.484 1.538 sum 13.591 5.617 -2.629 14.939 Atomic orbital electron populations 1.69638 1.09050 1.32110 1.34850 1.26880 0.95513 1.04199 0.90337 0.85517 0.78932 0.76329 0.80320 1.17030 1.19844 1.18460 1.19456 0.91877 0.95479 1.41721 0.91668 1.18834 0.94131 0.93584 0.91115 1.21351 0.93385 1.02787 1.03439 1.21634 0.95671 0.98141 0.97627 1.19549 0.93038 0.96793 1.02694 1.18614 0.90156 0.95563 0.97800 1.21381 0.94388 0.98222 1.01457 1.21314 0.94341 0.99316 0.98811 1.21462 1.00801 0.94245 0.98443 1.21211 0.92215 1.00226 1.00006 1.19603 0.94423 0.95712 0.97686 1.20809 0.99275 0.97577 0.96063 1.20543 0.78307 0.83917 0.84270 1.43651 1.46756 1.19475 1.31060 1.90656 1.66126 1.22426 1.68411 1.67192 1.04443 1.22272 1.20470 1.22543 0.91562 1.03340 1.02811 0.88909 0.85892 0.84075 0.85252 0.83321 0.83204 0.84169 0.86754 0.86464 0.76961 0.75756 0.84908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -42.83 13.93 21.84 0.30 -42.53 16 2 C 0.05 2.41 5.47 85.28 0.47 2.88 16 3 Si 0.97 39.97 24.40 68.60 1.67 41.64 16 4 H -0.25 -9.29 6.67 99.48 0.66 -8.63 16 5 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 6 H -0.26 -11.36 6.66 99.48 0.66 -10.70 16 7 C -0.46 -24.46 9.62 23.39 0.22 -24.23 16 8 H 0.07 3.74 8.06 -2.91 -0.02 3.72 16 9 C 0.03 1.41 5.15 -21.17 -0.11 1.30 16 10 C -0.18 -8.40 9.87 22.64 0.22 -8.18 16 11 C -0.11 -4.63 9.37 22.29 0.21 -4.42 16 12 C 0.01 0.63 6.68 41.95 0.28 0.91 16 13 C -0.02 -0.78 5.83 -20.04 -0.12 -0.89 16 14 C -0.14 -4.28 9.41 22.53 0.21 -4.07 16 15 C -0.12 -3.05 10.03 22.23 0.22 -2.83 16 16 C -0.13 -3.16 10.04 22.34 0.22 -2.93 16 17 C -0.12 -3.26 9.66 22.23 0.21 -3.04 16 18 C -0.07 -2.48 4.43 -19.60 -0.09 -2.57 16 19 C -0.10 -3.06 5.11 29.10 0.15 -2.91 16 20 C 0.54 18.98 6.49 87.65 0.57 19.54 16 21 N -0.85 -22.22 8.87 -173.53 -1.54 -23.76 16 22 O -0.60 -26.56 16.83 -3.03 -0.05 -26.61 16 23 N -0.44 -19.51 4.95 -182.70 -0.90 -20.41 16 24 C -0.04 -1.95 8.19 85.44 0.70 -1.25 16 25 H 0.30 13.72 8.30 -92.71 -0.77 12.95 16 26 H 0.12 5.18 8.06 -2.91 -0.02 5.15 16 27 H 0.14 4.81 6.19 -2.91 -0.02 4.79 16 28 H 0.13 3.68 6.19 -2.91 -0.02 3.66 16 29 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 30 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 31 H 0.14 3.00 8.05 -2.91 -0.02 2.97 16 32 H 0.11 2.57 8.02 -2.39 -0.02 2.55 16 33 H 0.12 4.07 5.75 -2.38 -0.01 4.06 16 34 H 0.40 9.82 8.93 -92.71 -0.83 9.00 16 35 H 0.41 8.04 8.83 -92.71 -0.82 7.22 16 36 H 0.13 6.14 4.39 -2.91 -0.01 6.12 16 Total: -1.00 -68.36 301.66 2.28 -66.07 By element: Atomic # 1 Polarization: 38.87 SS G_CDS: -0.58 Total: 38.29 kcal Atomic # 6 Polarization: -36.08 SS G_CDS: 3.38 Total: -32.69 kcal Atomic # 7 Polarization: -84.56 SS G_CDS: -2.14 Total: -86.70 kcal Atomic # 8 Polarization: -26.56 SS G_CDS: -0.05 Total: -26.61 kcal Atomic # 14 Polarization: 39.97 SS G_CDS: 1.67 Total: 41.64 kcal Total: -68.36 2.28 -66.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245446132.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.777 kcal (2) G-P(sol) polarization free energy of solvation -68.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds