Wall clock time and date at job start Tue Mar 31 2020 05:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30707 * 1 3 3 Si 1.86805 * 119.99654 * 2 1 4 4 H 1.48497 * 109.47483 * 274.99639 * 3 2 1 5 5 H 1.48503 * 109.46973 * 34.99739 * 3 2 1 6 6 H 1.48506 * 109.47039 * 154.99271 * 3 2 1 7 7 C 1.40105 * 120.00524 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99936 * 185.59424 * 7 2 1 9 9 C 1.40991 * 119.99871 * 5.59270 * 7 2 1 10 10 C 1.40870 * 119.68357 * 174.41163 * 9 7 2 11 11 C 1.36683 * 119.25585 * 179.73901 * 10 9 7 12 12 C 1.40266 * 118.60561 * 0.47898 * 11 10 9 13 13 C 1.47964 * 120.34985 * 179.77249 * 12 11 10 14 14 C 1.39642 * 120.14495 * 236.46386 * 13 12 11 15 15 C 1.37910 * 119.84767 * 179.97438 * 14 13 12 16 16 C 1.38416 * 120.14754 * 0.02593 * 15 14 13 17 17 C 1.38370 * 120.29729 * 0.02562 * 16 15 14 18 18 C 1.37957 * 120.14547 * 359.96427 * 17 16 15 19 19 C 1.50691 * 120.07340 * 180.02562 * 18 17 16 20 20 C 1.50704 * 109.47114 * 259.85423 * 19 18 17 21 21 N 1.34776 * 120.00077 * 185.78248 * 20 19 18 22 22 O 1.21280 * 119.99704 * 5.78341 * 20 19 18 23 23 C 1.40098 * 119.30078 * 359.49932 * 12 11 10 24 24 N 1.31188 * 120.69377 * 0.27503 * 23 12 11 25 25 H 0.96994 * 120.00250 * 0.02562 * 1 2 3 26 26 H 1.08004 * 120.36660 * 359.97438 * 10 9 7 27 27 H 1.08003 * 120.69832 * 180.24954 * 11 10 9 28 28 H 1.07994 * 120.07527 * 0.03795 * 14 13 12 29 29 H 1.07998 * 119.92423 * 180.29539 * 15 14 13 30 30 H 1.08000 * 119.85110 * 179.97438 * 16 15 14 31 31 H 1.08005 * 119.92974 * 179.97438 * 17 16 15 32 32 H 1.09004 * 109.47733 * 19.85846 * 19 18 17 33 33 H 1.09000 * 109.47432 * 139.85700 * 19 18 17 34 34 H 0.96997 * 120.00087 * 359.97438 * 21 20 19 35 35 H 0.96998 * 119.99952 * 180.02562 * 21 20 19 36 36 H 1.08001 * 119.64903 * 180.25081 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3071 0.0000 0.0000 3 14 2.2410 1.6178 0.0000 4 1 2.3829 2.1076 -1.3947 5 1 1.4951 2.6199 0.8030 6 1 3.5874 1.4122 0.5919 7 6 2.0077 -1.2133 -0.0005 8 1 3.0839 -1.2154 0.0906 9 6 1.3079 -2.4314 -0.1201 10 6 2.0240 -3.6386 -0.2388 11 6 1.3367 -4.8150 -0.3487 12 6 -0.0654 -4.7760 -0.3496 13 6 -0.8479 -6.0258 -0.4717 14 6 -1.7817 -6.1709 -1.4998 15 6 -2.5074 -7.3386 -1.6082 16 6 -2.3122 -8.3652 -0.7005 17 6 -1.3892 -8.2275 0.3212 18 6 -0.6566 -7.0647 0.4409 19 6 0.3485 -6.9167 1.5539 20 6 -0.2518 -6.0974 2.6672 21 7 0.5059 -5.7351 3.7213 22 8 -1.4167 -5.7641 2.6146 23 6 -0.7170 -3.5418 -0.2279 24 7 -0.0299 -2.4296 -0.1192 25 1 -0.4850 0.8400 -0.0004 26 1 3.1041 -3.6350 -0.2390 27 1 1.8622 -5.7544 -0.4369 28 1 -1.9345 -5.3709 -2.2090 29 1 -3.2265 -7.4540 -2.4057 30 1 -2.8834 -9.2774 -0.7896 31 1 -1.2420 -9.0321 1.0264 32 1 0.6188 -7.9023 1.9330 33 1 1.2397 -6.4166 1.1746 34 1 1.4375 -6.0020 3.7636 35 1 0.1194 -5.2081 4.4381 36 1 -1.7964 -3.5057 -0.2238 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245448260.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:29 Heat of formation + Delta-G solvation = 11.265442 kcal Electronic energy + Delta-G solvation = -21314.019554 eV Core-core repulsion = 18148.316676 eV Total energy + Delta-G solvation = -3165.702878 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.70873 -38.35765 -37.63790 -33.87623 -33.31153 -32.49623 -31.46191 -30.53612 -28.88533 -27.35838 -25.42997 -22.46070 -22.07627 -21.32830 -20.45661 -19.70665 -17.61795 -17.13734 -16.34200 -16.04219 -15.60503 -15.23818 -14.78343 -14.37061 -14.10040 -13.84749 -13.43430 -13.33888 -12.77167 -12.57080 -12.26613 -12.09044 -11.88969 -11.74946 -11.30204 -11.16452 -11.05354 -10.66975 -10.61986 -10.35773 -9.95811 -9.60207 -9.44497 -9.33461 -8.51667 -8.34401 -8.17437 -7.59267 -7.33422 -6.48896 -4.59275 1.77024 1.87251 2.71096 3.00571 3.03083 3.06187 3.09291 3.14325 3.86350 3.87574 4.36964 4.66931 5.06216 5.23122 5.43999 5.45586 5.50359 5.61920 5.78073 5.84238 5.98182 6.05457 6.11892 6.13927 6.50432 6.56856 6.68113 6.79792 6.90713 6.95708 7.04327 7.08835 7.17232 7.34651 7.42419 7.59035 7.65414 7.72179 7.95248 8.13923 8.55706 8.66254 8.83738 10.05356 10.21772 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.022190 B = 0.005034 C = 0.004550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.553108 B = 5561.193143 C = 6152.597976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.705 5.705 2 C 0.066 3.934 3 Si 0.908 3.092 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.421 4.421 8 H 0.085 0.915 9 C 0.254 3.746 10 C -0.273 4.273 11 C -0.043 4.043 12 C -0.272 4.272 13 C 0.037 3.963 14 C -0.126 4.126 15 C -0.117 4.117 16 C -0.147 4.147 17 C -0.108 4.108 18 C -0.077 4.077 19 C -0.103 4.103 20 C 0.525 3.475 21 N -0.861 5.861 22 O -0.530 6.530 23 C 0.161 3.839 24 N -0.487 5.487 25 H 0.275 0.725 26 H 0.099 0.901 27 H 0.095 0.905 28 H 0.118 0.882 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.091 0.909 33 H 0.110 0.890 34 H 0.397 0.603 35 H 0.398 0.602 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.744 -10.793 2.454 11.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.325 5.325 2 C -0.160 4.160 3 Si 0.732 3.268 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.451 4.451 8 H 0.103 0.897 9 C 0.130 3.870 10 C -0.295 4.295 11 C -0.067 4.067 12 C -0.277 4.277 13 C 0.036 3.964 14 C -0.144 4.144 15 C -0.135 4.135 16 C -0.165 4.165 17 C -0.126 4.126 18 C -0.078 4.078 19 C -0.143 4.143 20 C 0.310 3.690 21 N -0.424 5.424 22 O -0.405 6.405 23 C -0.007 4.007 24 N -0.198 5.198 25 H 0.086 0.914 26 H 0.117 0.883 27 H 0.113 0.887 28 H 0.136 0.864 29 H 0.131 0.869 30 H 0.130 0.870 31 H 0.129 0.871 32 H 0.109 0.891 33 H 0.128 0.872 34 H 0.225 0.775 35 H 0.228 0.772 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 0.390 -9.671 2.329 9.955 hybrid contribution 1.116 -0.027 0.241 1.142 sum 1.506 -9.698 2.570 10.145 Atomic orbital electron populations 1.70125 1.07304 1.28099 1.26975 1.26144 0.94918 1.01281 0.93704 0.86299 0.80522 0.80762 0.79205 1.19341 1.19985 1.18427 1.19677 0.94713 0.89701 1.41053 0.89696 1.18641 0.88491 0.91853 0.87976 1.21377 0.98665 0.93808 1.15688 1.20506 0.92763 0.96422 0.96967 1.18980 0.92936 0.92629 1.23171 1.18679 0.93531 0.92276 0.91926 1.21304 0.97224 0.97495 0.98380 1.20973 0.99516 0.93976 0.99078 1.20902 0.99925 0.99000 0.96691 1.20771 0.96715 0.96968 0.98146 1.19330 0.98352 0.94476 0.95594 1.20718 0.99783 1.00462 0.93319 1.20467 0.86420 0.79580 0.82493 1.43829 1.15151 1.59005 1.24464 1.90737 1.17101 1.54630 1.78018 1.22664 0.98493 0.87607 0.91891 1.68808 1.07205 1.25909 1.17903 0.91353 0.88327 0.88683 0.86380 0.86890 0.87021 0.87082 0.89088 0.87234 0.77507 0.77214 0.86532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -18.66 11.46 55.55 0.64 -18.02 16 2 C 0.07 1.65 5.49 -17.33 -0.10 1.56 16 3 Si 0.91 18.13 29.56 -169.99 -5.03 13.11 16 4 H -0.27 -5.31 7.11 56.52 0.40 -4.90 16 5 H -0.27 -5.40 7.11 56.52 0.40 -4.99 16 6 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 7 C -0.42 -10.96 9.12 -37.84 -0.34 -11.30 16 8 H 0.08 2.04 7.85 -52.48 -0.41 1.63 16 9 C 0.25 6.79 6.54 -84.98 -0.56 6.23 16 10 C -0.27 -6.38 9.76 -39.15 -0.38 -6.76 16 11 C -0.04 -0.92 7.91 -39.38 -0.31 -1.23 16 12 C -0.27 -6.03 4.76 -104.45 -0.50 -6.52 16 13 C 0.04 0.72 5.40 -104.88 -0.57 0.16 16 14 C -0.13 -2.28 9.65 -39.18 -0.38 -2.66 16 15 C -0.12 -1.82 10.03 -39.64 -0.40 -2.22 16 16 C -0.15 -2.17 10.04 -39.47 -0.40 -2.56 16 17 C -0.11 -1.67 9.66 -39.64 -0.38 -2.05 16 18 C -0.08 -1.34 4.40 -104.22 -0.46 -1.80 16 19 C -0.10 -1.56 5.31 -29.04 -0.15 -1.71 16 20 C 0.53 9.04 7.87 -10.98 -0.09 8.95 16 21 N -0.86 -11.19 8.87 31.22 0.28 -10.91 16 22 O -0.53 -11.60 16.87 5.56 0.09 -11.51 16 23 C 0.16 4.04 10.81 -17.13 -0.19 3.86 16 24 N -0.49 -13.44 7.86 -10.85 -0.09 -13.53 16 25 H 0.28 6.59 8.29 -40.82 -0.34 6.25 16 26 H 0.10 2.10 8.06 -52.48 -0.42 1.68 16 27 H 0.10 1.74 7.10 -52.48 -0.37 1.36 16 28 H 0.12 2.09 8.06 -52.49 -0.42 1.67 16 29 H 0.11 1.45 8.06 -52.49 -0.42 1.02 16 30 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 31 H 0.11 1.41 8.03 -52.48 -0.42 0.99 16 32 H 0.09 1.03 8.00 -51.93 -0.42 0.62 16 33 H 0.11 1.67 4.89 -51.93 -0.25 1.41 16 34 H 0.40 3.79 8.83 -40.82 -0.36 3.43 16 35 H 0.40 4.91 8.93 -40.82 -0.36 4.55 16 36 H 0.12 2.85 8.06 -52.49 -0.42 2.43 16 LS Contribution 314.91 15.07 4.75 4.75 Total: -1.00 -32.38 314.91 -8.40 -40.78 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: -3.85 Total: 13.40 kcal Atomic # 6 Polarization: -12.87 SS G_CDS: -5.19 Total: -18.06 kcal Atomic # 7 Polarization: -43.29 SS G_CDS: 0.83 Total: -42.46 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: 0.09 Total: -11.51 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: -5.03 Total: 13.11 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.38 -8.40 -40.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245448260.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.046 kcal (2) G-P(sol) polarization free energy of solvation -32.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds