Wall clock time and date at job start Tue Mar 31 2020 05:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30731 * 1 3 3 Si 1.86806 * 120.00129 * 2 1 4 4 H 1.48496 * 109.46944 * 85.01715 * 3 2 1 5 5 H 1.48494 * 109.46968 * 205.01488 * 3 2 1 6 6 H 1.48497 * 109.47005 * 325.01819 * 3 2 1 7 7 C 1.40039 * 119.99922 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99587 * 187.27940 * 7 2 1 9 9 C 1.41425 * 119.99871 * 7.27538 * 7 2 1 10 10 C 1.40477 * 119.77339 * 187.02107 * 9 7 2 11 11 C 1.39312 * 118.83054 * 179.77561 * 10 9 7 12 12 C 1.48387 * 120.82067 * 180.24201 * 11 10 9 13 13 C 1.39363 * 120.12142 * 236.56990 * 12 11 10 14 14 C 1.37996 * 119.87775 * 179.97438 * 13 12 11 15 15 C 1.38347 * 120.12301 * 0.02562 * 14 13 12 16 16 C 1.38309 * 120.24032 * 0.02562 * 15 14 13 17 17 C 1.38036 * 120.12409 * 359.68651 * 16 15 14 18 18 C 1.50700 * 120.06071 * 180.31975 * 17 16 15 19 19 C 1.50693 * 109.47087 * 264.36577 * 18 17 16 20 20 N 1.34781 * 120.00337 * 180.02562 * 19 18 17 21 21 O 1.21289 * 119.99996 * 0.02562 * 19 18 17 22 22 C 1.40038 * 118.35700 * 0.49063 * 11 10 9 23 23 C 1.38506 * 119.42319 * 359.74798 * 22 11 10 24 24 N 1.31476 * 121.14543 * 0.02562 * 23 22 11 25 25 H 0.97003 * 120.00212 * 359.97438 * 1 2 3 26 26 H 1.07993 * 120.58424 * 0.02562 * 10 9 7 27 27 H 1.07999 * 120.05750 * 0.02562 * 13 12 11 28 28 H 1.07997 * 119.94165 * 179.97438 * 14 13 12 29 29 H 1.07996 * 119.88018 * 179.97438 * 15 14 13 30 30 H 1.08000 * 119.93494 * 180.02562 * 16 15 14 31 31 H 1.08996 * 109.47282 * 24.36864 * 18 17 16 32 32 H 1.09004 * 109.47093 * 144.37256 * 18 17 16 33 33 H 0.96994 * 119.99285 * 0.02562 * 20 19 18 34 34 H 0.97004 * 119.99724 * 180.02562 * 20 19 18 35 35 H 1.08007 * 120.28690 * 179.73083 * 22 11 10 36 36 H 1.08002 * 119.42347 * 179.97438 * 23 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.3835 2.1072 1.3948 5 1 3.5876 1.4120 -0.5920 6 1 1.4955 2.6200 -0.8027 7 6 2.0075 -1.2128 -0.0005 8 1 3.0810 -1.2165 0.1180 9 6 1.3089 -2.4325 -0.1562 10 6 1.9917 -3.6513 -0.0088 11 6 1.2833 -4.8410 -0.1616 12 6 1.9594 -6.1532 -0.0102 13 6 1.9200 -7.0840 -1.0467 14 6 2.5509 -8.3026 -0.9006 15 6 3.2211 -8.6013 0.2722 16 6 3.2625 -7.6817 1.3045 17 6 2.6399 -6.4574 1.1669 18 6 2.6919 -5.4537 2.2898 19 6 1.4458 -5.5733 3.1286 20 7 1.2722 -4.7691 4.1962 21 8 0.5989 -6.3933 2.8430 22 6 -0.0814 -4.7680 -0.4670 23 6 -0.6831 -3.5278 -0.6017 24 7 0.0049 -2.4179 -0.4484 25 1 -0.4850 0.8401 0.0004 26 1 3.0464 -3.6656 0.2230 27 1 1.3974 -6.8517 -1.9628 28 1 2.5207 -9.0248 -1.7030 29 1 3.7132 -9.5563 0.3825 30 1 3.7874 -7.9198 2.2177 31 1 3.5672 -5.6471 2.9098 32 1 2.7555 -4.4476 1.8751 33 1 1.9493 -4.1131 4.4243 34 1 0.4702 -4.8464 4.7363 35 1 -0.6597 -5.6710 -0.5965 36 1 -1.7356 -3.4714 -0.8376 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245452039.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:34 Heat of formation + Delta-G solvation = 11.310693 kcal Electronic energy + Delta-G solvation = -21374.557329 eV Core-core repulsion = 18208.856413 eV Total energy + Delta-G solvation = -3165.700916 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.81378 -38.41947 -37.67672 -33.75532 -33.34664 -32.72603 -31.80250 -29.99339 -28.82414 -27.26382 -25.71038 -22.89865 -22.08458 -21.17271 -20.54729 -19.82438 -17.53736 -17.06638 -16.40722 -15.94983 -15.47123 -15.25208 -14.73210 -14.39342 -14.16499 -13.93525 -13.75610 -13.40997 -12.81404 -12.68563 -12.27938 -12.21777 -11.94412 -11.60534 -11.35918 -11.22057 -10.88620 -10.74080 -10.68913 -10.33258 -9.96247 -9.65776 -9.39607 -9.36571 -8.67649 -8.44669 -7.70326 -7.66171 -7.56524 -6.48787 -4.54556 1.61733 1.73114 2.73103 2.91451 3.05718 3.06228 3.09183 3.17047 3.82512 3.91246 4.26961 4.71133 4.98652 5.15069 5.28478 5.35831 5.41735 5.51179 5.76907 5.80631 5.93708 6.02659 6.08582 6.30443 6.38779 6.54786 6.66054 6.74298 6.79425 6.84704 7.02187 7.05903 7.12480 7.28122 7.31526 7.53324 7.62644 7.70974 7.96939 8.19770 8.61544 8.63151 8.87787 10.07643 10.28477 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.019085 B = 0.005373 C = 0.004998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.752334 B = 5209.675819 C = 5600.536702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.719 5.719 2 C 0.073 3.927 3 Si 0.904 3.096 4 H -0.270 1.270 5 H -0.261 1.261 6 H -0.275 1.275 7 C -0.438 4.438 8 H 0.083 0.917 9 C 0.260 3.740 10 C -0.266 4.266 11 C 0.006 3.994 12 C -0.003 4.003 13 C -0.110 4.110 14 C -0.122 4.122 15 C -0.133 4.133 16 C -0.111 4.111 17 C -0.056 4.056 18 C -0.117 4.117 19 C 0.526 3.474 20 N -0.859 5.859 21 O -0.535 6.535 22 C -0.290 4.290 23 C 0.125 3.875 24 N -0.484 5.484 25 H 0.274 0.726 26 H 0.101 0.899 27 H 0.121 0.879 28 H 0.117 0.883 29 H 0.116 0.884 30 H 0.116 0.884 31 H 0.094 0.906 32 H 0.126 0.874 33 H 0.400 0.600 34 H 0.397 0.603 35 H 0.095 0.905 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.150 -7.661 4.627 10.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.341 5.341 2 C -0.152 4.152 3 Si 0.728 3.272 4 H -0.196 1.196 5 H -0.185 1.185 6 H -0.200 1.200 7 C -0.469 4.469 8 H 0.101 0.899 9 C 0.135 3.865 10 C -0.289 4.289 11 C 0.000 4.000 12 C -0.003 4.003 13 C -0.129 4.129 14 C -0.140 4.140 15 C -0.151 4.151 16 C -0.129 4.129 17 C -0.057 4.057 18 C -0.157 4.157 19 C 0.311 3.689 20 N -0.422 5.422 21 O -0.411 6.411 22 C -0.313 4.313 23 C -0.041 4.041 24 N -0.197 5.197 25 H 0.085 0.915 26 H 0.119 0.881 27 H 0.139 0.861 28 H 0.135 0.865 29 H 0.134 0.866 30 H 0.134 0.866 31 H 0.112 0.888 32 H 0.143 0.857 33 H 0.228 0.772 34 H 0.228 0.772 35 H 0.113 0.887 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 5.137 -7.272 4.202 9.845 hybrid contribution 0.686 0.169 0.459 0.842 sum 5.822 -7.103 4.661 10.299 Atomic orbital electron populations 1.70063 1.07283 1.27941 1.28774 1.26021 0.94797 1.00986 0.93393 0.86370 0.80698 0.81111 0.78983 1.19564 1.18467 1.20045 1.19560 0.94716 0.89564 1.43092 0.89900 1.18498 0.88300 0.91548 0.88151 1.21714 0.99067 0.92434 1.15701 1.18564 0.93403 0.90493 0.97575 1.18881 0.94749 0.93855 0.92862 1.21190 0.99689 0.93276 0.98700 1.20995 0.98586 0.96747 0.97687 1.20974 1.00949 0.99123 0.94049 1.20821 1.00269 0.93253 0.98596 1.19253 0.98023 0.94504 0.93915 1.20914 0.96255 1.02896 0.95597 1.20463 0.88257 0.80029 0.80122 1.43814 1.25996 1.40731 1.31699 1.90731 1.44622 1.36349 1.69357 1.21316 0.94559 0.97919 1.17515 1.22428 0.98570 0.88626 0.94439 1.68634 1.07638 1.27237 1.16184 0.91527 0.88099 0.86060 0.86489 0.86619 0.86627 0.88758 0.85675 0.77211 0.77241 0.88705 0.86371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -18.86 11.57 55.55 0.64 -18.21 16 2 C 0.07 1.82 5.47 -17.35 -0.09 1.72 16 3 Si 0.90 18.06 29.57 -169.99 -5.03 13.03 16 4 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 5 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 6 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 7 C -0.44 -11.30 9.13 -37.69 -0.34 -11.64 16 8 H 0.08 1.98 7.86 -52.48 -0.41 1.57 16 9 C 0.26 6.89 6.52 -85.02 -0.55 6.34 16 10 C -0.27 -6.28 7.60 -38.34 -0.29 -6.57 16 11 C 0.01 0.14 4.92 -104.64 -0.51 -0.38 16 12 C 0.00 -0.07 5.44 -104.90 -0.57 -0.64 16 13 C -0.11 -1.94 9.65 -39.25 -0.38 -2.32 16 14 C -0.12 -1.81 10.03 -39.63 -0.40 -2.21 16 15 C -0.13 -1.88 10.04 -39.52 -0.40 -2.27 16 16 C -0.11 -1.69 9.67 -39.63 -0.38 -2.07 16 17 C -0.06 -0.99 4.38 -104.29 -0.46 -1.45 16 18 C -0.12 -1.86 5.33 -29.04 -0.15 -2.01 16 19 C 0.53 9.13 8.08 -10.99 -0.09 9.04 16 20 N -0.86 -11.31 8.87 31.22 0.28 -11.04 16 21 O -0.54 -11.52 16.87 5.55 0.09 -11.42 16 22 C -0.29 -6.79 9.76 -38.81 -0.38 -7.17 16 23 C 0.12 3.08 11.17 -17.61 -0.20 2.89 16 24 N -0.48 -13.24 7.96 -11.21 -0.09 -13.33 16 25 H 0.27 6.51 8.29 -40.82 -0.34 6.17 16 26 H 0.10 2.19 7.16 -52.49 -0.38 1.81 16 27 H 0.12 2.04 8.06 -52.49 -0.42 1.62 16 28 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 29 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 30 H 0.12 1.44 8.06 -52.49 -0.42 1.01 16 31 H 0.09 1.12 8.05 -51.93 -0.42 0.70 16 32 H 0.13 2.16 4.73 -51.93 -0.25 1.91 16 33 H 0.40 4.08 8.83 -40.82 -0.36 3.72 16 34 H 0.40 4.80 8.93 -40.82 -0.36 4.43 16 35 H 0.09 2.10 8.06 -52.48 -0.42 1.67 16 36 H 0.12 2.63 8.06 -52.49 -0.42 2.21 16 LS Contribution 315.54 15.07 4.76 4.76 Total: -1.00 -32.56 315.54 -8.40 -40.96 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: -3.85 Total: 14.01 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: -5.20 Total: -18.75 kcal Atomic # 7 Polarization: -43.41 SS G_CDS: 0.83 Total: -42.58 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.09 Total: -11.42 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.03 Total: 13.03 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.56 -8.40 -40.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245452039.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.266 kcal (2) G-P(sol) polarization free energy of solvation -32.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds