Wall clock time and date at job start Tue Mar 31 2020 05:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30731 * 1 3 3 Si 1.86806 * 120.00129 * 2 1 4 4 H 1.48496 * 109.46944 * 85.01715 * 3 2 1 5 5 H 1.48494 * 109.46968 * 205.01488 * 3 2 1 6 6 H 1.48497 * 109.47005 * 325.01819 * 3 2 1 7 7 C 1.40039 * 119.99922 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99587 * 187.27940 * 7 2 1 9 9 C 1.41425 * 119.99871 * 7.27538 * 7 2 1 10 10 C 1.40477 * 119.77339 * 187.02107 * 9 7 2 11 11 C 1.39312 * 118.83054 * 179.77561 * 10 9 7 12 12 C 1.48387 * 120.82067 * 180.24201 * 11 10 9 13 13 C 1.39363 * 120.12142 * 236.56990 * 12 11 10 14 14 C 1.37996 * 119.87775 * 179.97438 * 13 12 11 15 15 C 1.38347 * 120.12301 * 0.02562 * 14 13 12 16 16 C 1.38309 * 120.24032 * 0.02562 * 15 14 13 17 17 C 1.38036 * 120.12409 * 359.68651 * 16 15 14 18 18 C 1.50700 * 120.06071 * 180.31975 * 17 16 15 19 19 C 1.50693 * 109.47087 * 264.36577 * 18 17 16 20 20 N 1.34781 * 120.00337 * 180.02562 * 19 18 17 21 21 O 1.21289 * 119.99996 * 0.02562 * 19 18 17 22 22 C 1.40038 * 118.35700 * 0.49063 * 11 10 9 23 23 C 1.38506 * 119.42319 * 359.74798 * 22 11 10 24 24 N 1.31476 * 121.14543 * 0.02562 * 23 22 11 25 25 H 0.97003 * 120.00212 * 359.97438 * 1 2 3 26 26 H 1.07993 * 120.58424 * 0.02562 * 10 9 7 27 27 H 1.07999 * 120.05750 * 0.02562 * 13 12 11 28 28 H 1.07997 * 119.94165 * 179.97438 * 14 13 12 29 29 H 1.07996 * 119.88018 * 179.97438 * 15 14 13 30 30 H 1.08000 * 119.93494 * 180.02562 * 16 15 14 31 31 H 1.08996 * 109.47282 * 24.36864 * 18 17 16 32 32 H 1.09004 * 109.47093 * 144.37256 * 18 17 16 33 33 H 0.96994 * 119.99285 * 0.02562 * 20 19 18 34 34 H 0.97004 * 119.99724 * 180.02562 * 20 19 18 35 35 H 1.08007 * 120.28690 * 179.73083 * 22 11 10 36 36 H 1.08002 * 119.42347 * 179.97438 * 23 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.3835 2.1072 1.3948 5 1 3.5876 1.4120 -0.5920 6 1 1.4955 2.6200 -0.8027 7 6 2.0075 -1.2128 -0.0005 8 1 3.0810 -1.2165 0.1180 9 6 1.3089 -2.4325 -0.1562 10 6 1.9917 -3.6513 -0.0088 11 6 1.2833 -4.8410 -0.1616 12 6 1.9594 -6.1532 -0.0102 13 6 1.9200 -7.0840 -1.0467 14 6 2.5509 -8.3026 -0.9006 15 6 3.2211 -8.6013 0.2722 16 6 3.2625 -7.6817 1.3045 17 6 2.6399 -6.4574 1.1669 18 6 2.6919 -5.4537 2.2898 19 6 1.4458 -5.5733 3.1286 20 7 1.2722 -4.7691 4.1962 21 8 0.5989 -6.3933 2.8430 22 6 -0.0814 -4.7680 -0.4670 23 6 -0.6831 -3.5278 -0.6017 24 7 0.0049 -2.4179 -0.4484 25 1 -0.4850 0.8401 0.0004 26 1 3.0464 -3.6656 0.2230 27 1 1.3974 -6.8517 -1.9628 28 1 2.5207 -9.0248 -1.7030 29 1 3.7132 -9.5563 0.3825 30 1 3.7874 -7.9198 2.2177 31 1 3.5672 -5.6471 2.9098 32 1 2.7555 -4.4476 1.8751 33 1 1.9493 -4.1131 4.4243 34 1 0.4702 -4.8464 4.7363 35 1 -0.6597 -5.6710 -0.5965 36 1 -1.7356 -3.4714 -0.8376 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245452039.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:33 Heat of formation + Delta-G solvation = -10.165795 kcal Electronic energy + Delta-G solvation = -21375.488619 eV Core-core repulsion = 18208.856413 eV Total energy + Delta-G solvation = -3166.632206 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.18942 -39.96564 -39.22338 -35.57154 -34.65783 -34.14111 -33.21903 -31.88589 -30.31262 -28.52998 -27.61471 -24.41773 -23.60149 -22.76704 -22.10515 -21.15183 -19.21784 -18.33725 -17.72428 -17.54853 -16.88093 -16.68749 -16.29942 -16.08226 -15.82178 -15.32300 -15.23952 -14.77731 -14.36302 -14.09684 -13.99237 -13.71366 -13.32293 -13.04817 -12.92167 -12.81508 -12.63420 -12.25441 -12.02685 -11.79875 -11.71980 -11.18316 -11.06173 -10.61171 -10.28086 -9.67755 -9.59110 -9.49144 -9.21310 -8.34262 -6.49796 0.28772 0.50607 0.88535 1.20420 1.42735 1.53813 1.58143 1.71780 2.23814 2.63512 2.83969 3.06412 3.72756 3.89335 3.91996 4.03063 4.18501 4.23682 4.27602 4.40353 4.60670 4.63240 4.68338 4.78684 4.86065 4.97420 5.08003 5.19771 5.23352 5.40142 5.57913 5.61241 5.63591 5.71130 5.91082 5.92950 6.09895 6.18615 6.28728 6.49005 6.74841 6.94863 7.39533 8.16487 8.45874 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.019085 B = 0.005373 C = 0.004998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.752334 B = 5209.675819 C = 5600.536702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.762 5.762 2 C 0.029 3.971 3 Si 0.985 3.015 4 H -0.259 1.259 5 H -0.254 1.254 6 H -0.273 1.273 7 C -0.466 4.466 8 H 0.093 0.907 9 C 0.230 3.770 10 C -0.268 4.268 11 C 0.016 3.984 12 C -0.044 4.044 13 C -0.127 4.127 14 C -0.121 4.121 15 C -0.123 4.123 16 C -0.114 4.114 17 C -0.069 4.069 18 C -0.115 4.115 19 C 0.519 3.481 20 N -0.841 5.841 21 O -0.585 6.585 22 C -0.299 4.299 23 C 0.107 3.893 24 N -0.521 5.521 25 H 0.279 0.721 26 H 0.115 0.885 27 H 0.116 0.884 28 H 0.149 0.851 29 H 0.156 0.844 30 H 0.148 0.852 31 H 0.138 0.862 32 H 0.108 0.892 33 H 0.416 0.584 34 H 0.404 0.596 35 H 0.102 0.898 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.552 -8.762 5.513 13.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.384 5.384 2 C -0.193 4.193 3 Si 0.805 3.195 4 H -0.183 1.183 5 H -0.178 1.178 6 H -0.198 1.198 7 C -0.498 4.498 8 H 0.112 0.888 9 C 0.105 3.895 10 C -0.290 4.290 11 C 0.010 3.990 12 C -0.044 4.044 13 C -0.145 4.145 14 C -0.138 4.138 15 C -0.140 4.140 16 C -0.132 4.132 17 C -0.070 4.070 18 C -0.154 4.154 19 C 0.305 3.695 20 N -0.405 5.405 21 O -0.464 6.464 22 C -0.322 4.322 23 C -0.057 4.057 24 N -0.234 5.234 25 H 0.090 0.910 26 H 0.133 0.867 27 H 0.134 0.866 28 H 0.167 0.833 29 H 0.174 0.826 30 H 0.165 0.835 31 H 0.155 0.845 32 H 0.126 0.874 33 H 0.247 0.753 34 H 0.235 0.765 35 H 0.120 0.880 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 7.551 -8.365 5.116 12.376 hybrid contribution -0.050 0.340 0.213 0.404 sum 7.501 -8.025 5.329 12.209 Atomic orbital electron populations 1.70173 1.09152 1.29275 1.29764 1.26972 0.95541 1.04582 0.92209 0.85154 0.79105 0.75765 0.79430 1.18317 1.17772 1.19809 1.19947 0.95393 0.90284 1.44141 0.88847 1.18966 0.88592 0.93105 0.88846 1.21810 0.99635 0.92026 1.15535 1.18841 0.92956 0.91997 0.95211 1.18901 0.97213 0.93174 0.95121 1.21310 1.00639 0.94361 0.98237 1.21361 0.97422 0.95956 0.99102 1.21497 0.99359 1.00245 0.92918 1.21245 0.99580 0.92216 1.00174 1.19499 0.98004 0.96019 0.93471 1.20943 0.97224 1.01611 0.95670 1.20817 0.88246 0.79771 0.80685 1.43687 1.26536 1.39877 1.30430 1.90704 1.46192 1.38663 1.70867 1.21497 0.95476 0.97628 1.17575 1.22729 0.99318 0.88886 0.94748 1.68594 1.08513 1.28375 1.17928 0.91021 0.86731 0.86634 0.83329 0.82644 0.83455 0.84460 0.87414 0.75339 0.76536 0.87986 0.85080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -41.07 11.57 21.84 0.25 -40.82 16 2 C 0.03 1.43 5.47 85.29 0.47 1.90 16 3 Si 0.99 37.07 29.57 68.60 2.03 39.10 16 4 H -0.26 -9.17 7.11 99.48 0.71 -8.46 16 5 H -0.25 -9.19 7.11 99.48 0.71 -8.48 16 6 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 7 C -0.47 -24.60 9.13 23.49 0.21 -24.38 16 8 H 0.09 4.51 7.86 -2.91 -0.02 4.49 16 9 C 0.23 12.63 6.52 40.20 0.26 12.89 16 10 C -0.27 -12.96 7.60 23.07 0.18 -12.78 16 11 C 0.02 0.75 4.92 -19.88 -0.10 0.66 16 12 C -0.04 -1.73 5.44 -20.04 -0.11 -1.84 16 13 C -0.13 -4.39 9.65 22.48 0.22 -4.18 16 14 C -0.12 -3.23 10.03 22.24 0.22 -3.01 16 15 C -0.12 -2.95 10.04 22.31 0.22 -2.72 16 16 C -0.11 -3.07 9.67 22.24 0.22 -2.85 16 17 C -0.07 -2.33 4.38 -19.65 -0.09 -2.42 16 18 C -0.12 -3.49 5.33 29.10 0.16 -3.34 16 19 C 0.52 17.64 8.08 87.65 0.71 18.35 16 20 N -0.84 -21.33 8.87 -173.53 -1.54 -22.87 16 21 O -0.58 -25.24 16.87 -3.06 -0.05 -25.29 16 22 C -0.30 -14.52 9.76 22.77 0.22 -14.30 16 23 C 0.11 5.55 11.17 84.81 0.95 6.49 16 24 N -0.52 -29.73 7.96 -189.37 -1.51 -31.24 16 25 H 0.28 13.63 8.29 -92.71 -0.77 12.86 16 26 H 0.11 5.06 7.16 -2.91 -0.02 5.04 16 27 H 0.12 3.95 8.06 -2.91 -0.02 3.93 16 28 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 29 H 0.16 2.52 8.06 -2.91 -0.02 2.49 16 30 H 0.15 2.95 8.06 -2.91 -0.02 2.93 16 31 H 0.14 2.82 8.05 -2.39 -0.02 2.81 16 32 H 0.11 3.68 4.73 -2.38 -0.01 3.67 16 33 H 0.42 7.84 8.83 -92.71 -0.82 7.02 16 34 H 0.40 9.45 8.93 -92.71 -0.83 8.62 16 35 H 0.10 4.69 8.06 -2.91 -0.02 4.66 16 36 H 0.13 6.14 8.06 -2.91 -0.02 6.12 16 Total: -1.00 -73.78 315.54 2.41 -71.37 By element: Atomic # 1 Polarization: 41.77 SS G_CDS: -0.51 Total: 41.26 kcal Atomic # 6 Polarization: -35.26 SS G_CDS: 3.74 Total: -31.53 kcal Atomic # 7 Polarization: -92.13 SS G_CDS: -2.79 Total: -94.92 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: -0.05 Total: -25.29 kcal Atomic # 14 Polarization: 37.07 SS G_CDS: 2.03 Total: 39.10 kcal Total: -73.78 2.41 -71.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245452039.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.208 kcal (2) G-P(sol) polarization free energy of solvation -73.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds