Wall clock time and date at job start Tue Mar 31 2020 05:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86800 * 120.00356 * 2 1 4 4 H 1.48500 * 109.47098 * 275.41648 * 3 2 1 5 5 H 1.48501 * 109.47009 * 35.41080 * 3 2 1 6 6 H 1.48496 * 109.47461 * 155.41482 * 3 2 1 7 7 C 1.39929 * 119.99975 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00060 * 341.73192 * 7 2 1 9 9 C 1.41426 * 119.99957 * 161.73361 * 7 2 1 10 10 C 1.40789 * 120.18983 * 330.17835 * 9 7 2 11 11 C 1.37680 * 119.99508 * 180.02562 * 10 9 7 12 12 C 1.38432 * 120.37982 * 0.02562 * 11 10 9 13 13 C 1.39700 * 120.37453 * 359.71979 * 12 11 10 14 14 C 1.48393 * 120.00047 * 180.28664 * 13 12 11 15 15 C 1.39176 * 120.55454 * 180.27694 * 14 13 12 16 16 N 1.31759 * 121.02646 * 180.02562 * 15 14 13 17 17 C 1.32486 * 121.99189 * 359.94831 * 16 15 14 18 18 C 1.39541 * 120.16894 * 359.92227 * 17 16 15 19 19 C 1.38458 * 119.74526 * 359.91917 * 18 17 16 20 20 N 1.40274 * 120.01222 * 180.26863 * 18 17 16 21 21 C 1.47325 * 117.64933 * 346.42578 * 20 18 17 22 22 C 1.53534 * 107.52542 * 41.72556 * 21 20 18 23 23 O 1.35844 * 119.37793 * 179.75058 * 17 16 15 24 24 C 1.38779 * 119.99916 * 0.55830 * 13 12 11 25 25 H 0.97001 * 119.99955 * 0.02562 * 1 2 3 26 26 H 1.08001 * 120.00204 * 0.03900 * 10 9 7 27 27 H 1.08002 * 119.80970 * 180.02562 * 11 10 9 28 28 H 1.07997 * 119.81373 * 180.02562 * 12 11 10 29 29 H 1.07999 * 119.48772 * 0.02565 * 15 14 13 30 30 H 1.08006 * 120.91053 * 180.12142 * 19 18 17 31 31 H 0.96998 * 121.17135 * 166.44660 * 20 18 17 32 32 H 1.09006 * 109.84858 * 282.22092 * 21 20 18 33 33 H 1.08998 * 109.90504 * 161.26344 * 21 20 18 34 34 H 1.09007 * 109.57112 * 181.95586 * 22 21 20 35 35 H 1.08998 * 109.57192 * 61.58376 * 22 21 20 36 36 H 1.07999 * 120.18827 * 179.72455 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3754 2.1124 -1.3938 5 1 1.5017 2.6169 0.8113 6 1 3.5924 1.4098 0.5825 7 6 2.0079 -1.2118 -0.0005 8 1 1.5087 -2.1237 0.2922 9 6 3.3687 -1.2425 -0.3844 10 6 3.8626 -0.3099 -1.3164 11 6 5.1879 -0.3437 -1.6876 12 6 6.0416 -1.2917 -1.1500 13 6 5.5694 -2.2211 -0.2201 14 6 6.4932 -3.2296 0.3557 15 6 6.0338 -4.1646 1.2786 16 7 6.8460 -5.0638 1.7961 17 6 8.1279 -5.1238 1.4670 18 6 8.6584 -4.2200 0.5457 19 6 7.8395 -3.2605 -0.0251 20 7 10.0149 -4.2901 0.1953 21 6 10.8966 -5.1175 1.0371 22 6 10.1372 -6.4092 1.3719 23 8 8.9188 -6.0698 2.0372 24 6 4.2350 -2.2049 0.1609 25 1 -0.4850 0.8401 -0.0004 26 1 3.2019 0.4322 -1.7398 27 1 5.5638 0.3734 -2.4025 28 1 7.0797 -1.3096 -1.4474 29 1 4.9954 -4.1529 1.5752 30 1 8.2299 -2.5529 -0.7417 31 1 10.3602 -3.8105 -0.5738 32 1 11.1401 -4.5829 1.9553 33 1 11.8112 -5.3560 0.4942 34 1 10.7480 -7.0331 2.0246 35 1 9.9129 -6.9497 0.4523 36 1 3.8657 -2.9249 0.8762 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245549421.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:03 Heat of formation + Delta-G solvation = 28.291819 kcal Electronic energy + Delta-G solvation = -20726.967637 eV Core-core repulsion = 17562.003078 eV Total energy + Delta-G solvation = -3164.964559 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.84984 -38.60963 -37.34672 -35.64472 -33.83412 -32.28102 -31.42471 -30.34875 -28.88071 -27.05274 -25.38212 -24.51163 -23.34259 -21.98194 -20.49928 -20.08085 -18.27927 -17.67964 -17.25514 -16.54688 -16.07548 -15.62201 -15.01502 -14.72205 -14.56674 -14.17238 -13.98141 -13.66489 -13.41357 -12.99030 -12.91990 -12.69220 -12.11247 -11.98699 -11.57839 -11.53170 -11.23033 -10.89308 -10.73703 -10.66059 -10.41498 -9.86373 -9.71841 -9.34529 -9.08619 -8.99829 -7.78740 -7.69862 -7.07813 -6.96934 -4.52371 1.16470 1.57141 2.56961 2.70726 2.93047 3.09452 3.15937 3.20445 3.30730 3.96068 4.09848 4.33540 4.55396 4.57389 4.75121 4.84390 5.01493 5.17348 5.29780 5.36612 5.41072 5.43525 5.60870 5.88506 6.02928 6.14146 6.34193 6.45588 6.53939 6.73156 6.78779 6.91556 7.08358 7.26151 7.34260 7.49059 7.53426 7.66761 7.80884 8.01212 8.31558 8.34063 8.58836 8.76560 10.05393 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.036403 B = 0.003811 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.979530 B = 7344.548050 C = 7872.343934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.085 3.915 3 Si 0.910 3.090 4 H -0.271 1.271 5 H -0.291 1.291 6 H -0.244 1.244 7 C -0.448 4.448 8 H 0.092 0.908 9 C 0.091 3.909 10 C -0.231 4.231 11 C -0.080 4.080 12 C -0.227 4.227 13 C -0.022 4.022 14 C -0.051 4.051 15 C 0.091 3.909 16 N -0.464 5.464 17 C 0.247 3.753 18 C 0.098 3.902 19 C -0.117 4.117 20 N -0.754 5.754 21 C 0.087 3.913 22 C 0.050 3.950 23 O -0.304 6.304 24 C -0.185 4.185 25 H 0.285 0.715 26 H 0.101 0.899 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.168 0.832 30 H 0.138 0.862 31 H 0.406 0.594 32 H 0.069 0.931 33 H 0.094 0.906 34 H 0.118 0.882 35 H 0.067 0.933 36 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.449 -6.126 -0.238 19.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.134 4.134 3 Si 0.737 3.263 4 H -0.197 1.197 5 H -0.218 1.218 6 H -0.167 1.167 7 C -0.476 4.476 8 H 0.110 0.890 9 C 0.089 3.911 10 C -0.250 4.250 11 C -0.098 4.098 12 C -0.246 4.246 13 C -0.023 4.023 14 C -0.054 4.054 15 C -0.067 4.067 16 N -0.181 5.181 17 C 0.064 3.936 18 C -0.004 4.004 19 C -0.146 4.146 20 N -0.391 5.391 21 C -0.038 4.038 22 C -0.027 4.027 23 O -0.214 6.214 24 C -0.204 4.204 25 H 0.096 0.904 26 H 0.119 0.881 27 H 0.114 0.886 28 H 0.113 0.887 29 H 0.185 0.815 30 H 0.155 0.845 31 H 0.242 0.758 32 H 0.088 0.912 33 H 0.112 0.888 34 H 0.135 0.865 35 H 0.085 0.915 36 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 17.942 -6.884 0.694 19.230 hybrid contribution 0.863 1.675 -1.193 2.230 sum 18.804 -5.209 -0.499 19.519 Atomic orbital electron populations 1.69695 1.08098 1.30280 1.35039 1.26140 0.94698 1.01714 0.90882 0.86329 0.81384 0.79842 0.78785 1.19686 1.21800 1.16695 1.19494 0.93084 0.96213 1.38825 0.88961 1.17647 0.93016 0.90798 0.89686 1.21130 0.95636 1.04613 1.03629 1.20522 0.93788 0.97142 0.98331 1.20369 0.98202 1.00994 1.05013 1.18204 0.92594 0.94356 0.97157 1.19813 0.92898 0.96298 0.96414 1.22560 0.98864 0.90819 0.94484 1.66710 1.01022 1.24090 1.26282 1.18919 0.88685 0.89784 0.96184 1.18529 0.85898 0.96516 0.99493 1.21007 0.93069 0.98030 1.02535 1.44501 1.04599 1.56330 1.33686 1.22222 0.93590 0.91887 0.96135 1.23290 0.84345 0.96372 0.98730 1.85906 1.32232 1.55138 1.48124 1.21139 0.91666 1.03731 1.03880 0.90422 0.88130 0.88638 0.88689 0.81534 0.84462 0.75807 0.91243 0.88810 0.86453 0.91514 0.87416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.30 13.93 55.55 0.77 -20.52 16 2 C 0.08 2.19 5.40 -17.35 -0.09 2.10 16 3 Si 0.91 20.52 24.52 -169.99 -4.17 16.35 16 4 H -0.27 -5.91 6.71 56.52 0.38 -5.53 16 5 H -0.29 -6.34 7.11 56.52 0.40 -5.93 16 6 H -0.24 -5.64 6.86 56.52 0.39 -5.25 16 7 C -0.45 -11.87 9.57 -37.74 -0.36 -12.24 16 8 H 0.09 2.55 8.06 -52.48 -0.42 2.13 16 9 C 0.09 2.26 5.10 -106.87 -0.55 1.72 16 10 C -0.23 -5.43 7.17 -38.82 -0.28 -5.71 16 11 C -0.08 -1.66 10.01 -39.71 -0.40 -2.06 16 12 C -0.23 -4.51 9.45 -38.96 -0.37 -4.88 16 13 C -0.02 -0.46 5.87 -104.97 -0.62 -1.07 16 14 C -0.05 -0.94 5.89 -104.73 -0.62 -1.55 16 15 C 0.09 1.65 10.58 -17.23 -0.18 1.47 16 16 N -0.46 -8.54 10.37 -12.84 -0.13 -8.68 16 17 C 0.25 4.11 7.58 -16.78 -0.13 3.98 16 18 C 0.10 1.44 6.50 -83.43 -0.54 0.90 16 19 C -0.12 -1.84 9.42 -38.86 -0.37 -2.21 16 20 N -0.75 -7.91 5.93 -57.57 -0.34 -8.25 16 21 C 0.09 0.68 7.37 -3.31 -0.02 0.65 16 22 C 0.05 0.45 7.17 37.43 0.27 0.72 16 23 O -0.30 -4.46 10.41 -19.25 -0.20 -4.66 16 24 C -0.19 -4.17 9.18 -38.53 -0.35 -4.52 16 25 H 0.29 6.82 8.30 -40.82 -0.34 6.48 16 26 H 0.10 2.36 4.72 -52.49 -0.25 2.11 16 27 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16 28 H 0.10 1.62 6.25 -52.49 -0.33 1.29 16 29 H 0.17 2.85 6.20 -52.49 -0.33 2.53 16 30 H 0.14 1.90 6.32 -52.48 -0.33 1.57 16 31 H 0.41 3.37 8.91 -40.82 -0.36 3.00 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.12 0.67 8.14 -51.92 -0.42 0.24 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.11 2.26 6.22 -52.49 -0.33 1.93 16 LS Contribution 297.67 15.07 4.49 4.49 Total: -1.00 -29.99 297.67 -7.82 -37.81 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -3.63 Total: 6.16 kcal Atomic # 6 Polarization: -18.11 SS G_CDS: -4.60 Total: -22.71 kcal Atomic # 7 Polarization: -37.74 SS G_CDS: 0.30 Total: -37.45 kcal Atomic # 8 Polarization: -4.46 SS G_CDS: -0.20 Total: -4.66 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.17 Total: 16.35 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -29.99 -7.82 -37.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245549421.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.101 kcal (2) G-P(sol) polarization free energy of solvation -29.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds