Wall clock time and date at job start Tue Mar 31 2020 05:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 S 1.81398 * 109.47302 * 2 1 4 4 O 1.42096 * 110.54461 * 68.36603 * 3 2 1 5 5 O 1.42105 * 110.53894 * 291.62212 * 3 2 1 6 6 C 1.76199 * 104.44805 * 179.97438 * 3 2 1 7 7 C 1.38253 * 120.00077 * 269.94862 * 6 3 2 8 8 C 1.38204 * 119.99863 * 179.97438 * 7 6 3 9 9 C 1.38261 * 120.00515 * 0.07163 * 8 7 6 10 10 C 1.38208 * 119.99533 * 359.95684 * 9 8 7 11 11 C 1.50701 * 119.99804 * 180.02562 * 10 9 8 12 12 C 1.52999 * 109.47008 * 270.01729 * 11 10 9 13 13 C 1.53000 * 109.47111 * 180.02562 * 12 11 10 14 14 C 1.50704 * 109.47238 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.99745 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00196 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00154 * 179.97438 * 16 14 13 18 18 Si 1.86796 * 119.99791 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.47143 * 90.00448 * 18 16 14 20 20 H 1.48507 * 109.47079 * 210.00177 * 18 16 14 21 21 H 1.48502 * 109.47660 * 330.00152 * 18 16 14 22 22 C 1.38220 * 119.99875 * 90.00066 * 6 3 2 23 23 H 1.09002 * 109.46978 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47517 * 300.00484 * 1 2 3 25 25 H 1.09000 * 109.46496 * 60.00583 * 1 2 3 26 26 H 1.08996 * 109.46899 * 239.99078 * 2 1 3 27 27 H 1.09004 * 109.46364 * 119.99901 * 2 1 3 28 28 H 1.08005 * 119.99943 * 0.04961 * 7 6 3 29 29 H 1.08004 * 120.00227 * 180.02562 * 8 7 6 30 30 H 1.07992 * 120.00025 * 179.97438 * 9 8 7 31 31 H 1.08990 * 109.47415 * 30.02092 * 11 10 9 32 32 H 1.09006 * 109.46768 * 150.01991 * 11 10 9 33 33 H 1.09000 * 109.47213 * 299.99878 * 12 11 10 34 34 H 1.09000 * 109.47148 * 60.00017 * 12 11 10 35 35 H 1.09000 * 109.46721 * 299.99859 * 13 12 11 36 36 H 1.08996 * 109.47448 * 60.00309 * 13 12 11 37 37 H 0.97000 * 120.00068 * 179.97438 * 17 16 14 38 38 H 1.08000 * 119.99660 * 0.26988 * 22 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1348 1.7102 0.0000 4 8 1.8385 2.3439 1.2369 5 8 1.8387 2.3437 -1.2371 6 6 3.8900 1.5559 0.0008 7 6 4.5782 1.4966 1.1984 8 6 5.9549 1.3750 1.1989 9 6 6.6441 1.3142 0.0019 10 6 5.9561 1.3740 -1.1953 11 6 6.7073 1.3071 -2.5001 12 6 7.0883 2.7214 -2.9423 13 6 7.8503 2.6536 -4.2673 14 6 8.2263 4.0465 -4.7025 15 1 7.9490 4.8954 -4.0950 16 6 8.9241 4.2374 -5.8762 17 7 9.2517 5.4530 -6.2562 18 14 9.4043 2.7692 -6.9265 19 1 8.3241 2.4865 -7.9056 20 1 10.6641 3.0709 -7.6527 21 1 9.6065 1.5829 -6.0563 22 6 4.5789 1.4952 -1.1960 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3632 0.5138 -0.8901 26 1 1.8933 -0.5140 -0.8899 27 1 1.8933 -0.5139 0.8901 28 1 4.0399 1.5441 2.1335 29 1 6.4926 1.3283 2.1344 30 1 7.7199 1.2196 0.0024 31 1 7.6106 0.7116 -2.3692 32 1 6.0755 0.8468 -3.2598 33 1 6.1849 3.3170 -3.0732 34 1 7.7200 3.1818 -2.1826 35 1 8.7538 2.0579 -4.1367 36 1 7.2183 2.1934 -5.0268 37 1 9.7430 5.5872 -7.0818 38 1 4.0417 1.5468 -2.1315 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250065430.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:21 Heat of formation + Delta-G solvation = -67.505693 kcal Electronic energy + Delta-G solvation = -19324.988154 eV Core-core repulsion = 16259.020703 eV Total energy + Delta-G solvation = -3065.967451 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.108 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.48272 -37.25213 -36.09270 -35.01300 -33.54291 -32.68808 -31.36545 -30.74757 -27.27215 -24.60792 -23.70176 -23.13451 -21.45176 -20.11807 -18.95867 -17.72694 -16.68913 -16.58287 -16.36735 -15.97974 -15.43756 -14.59697 -14.48203 -14.12613 -13.83292 -13.72945 -13.41317 -13.17363 -12.88648 -12.62780 -12.33331 -12.22926 -12.12242 -12.04194 -11.96317 -11.70543 -11.39600 -11.09009 -10.96028 -10.79464 -10.56833 -9.94050 -9.76532 -9.73335 -9.37786 -9.19364 -8.71916 -8.52972 -6.02933 -4.01048 -0.15973 0.76164 1.22989 2.69741 3.30850 3.33008 3.37954 3.40855 3.75322 3.87780 4.23370 4.39147 4.45648 4.71845 4.76595 4.78430 4.95025 5.14843 5.18982 5.26911 5.30069 5.32837 5.41966 5.50502 5.72181 5.80337 5.84757 5.96002 6.16534 6.19021 6.32153 6.62820 6.63857 6.77966 6.89735 7.29955 7.42298 7.80326 8.55682 9.02559 9.59254 11.10717 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.025183 B = 0.003457 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.592534 B = 8096.475661 C = 8489.966498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.610 4.610 3 S 2.496 3.504 4 O -0.939 6.939 5 O -0.932 6.932 6 C -0.658 4.658 7 C -0.039 4.039 8 C -0.138 4.138 9 C -0.064 4.064 10 C -0.085 4.085 11 C -0.089 4.089 12 C -0.099 4.099 13 C -0.014 4.014 14 C -0.521 4.521 15 H 0.071 0.929 16 C 0.065 3.935 17 N -0.904 5.904 18 Si 0.881 3.119 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.266 1.266 22 C -0.025 4.025 23 H 0.083 0.917 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.136 0.864 27 H 0.134 0.866 28 H 0.137 0.863 29 H 0.130 0.870 30 H 0.131 0.869 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.015 0.985 36 H 0.012 0.988 37 H 0.263 0.737 38 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.173 -15.714 16.136 26.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.739 4.739 3 S 2.676 3.324 4 O -0.937 6.937 5 O -0.930 6.930 6 C -0.745 4.745 7 C -0.058 4.058 8 C -0.157 4.157 9 C -0.082 4.082 10 C -0.085 4.085 11 C -0.127 4.127 12 C -0.136 4.136 13 C -0.051 4.051 14 C -0.559 4.559 15 H 0.089 0.911 16 C -0.136 4.136 17 N -0.543 5.543 18 Si 0.709 3.291 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.191 1.191 22 C -0.044 4.044 23 H 0.102 0.898 24 H 0.092 0.908 25 H 0.093 0.907 26 H 0.154 0.846 27 H 0.152 0.848 28 H 0.155 0.845 29 H 0.148 0.852 30 H 0.149 0.851 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.034 0.966 36 H 0.030 0.970 37 H 0.072 0.928 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -14.545 -14.850 15.992 26.226 hybrid contribution 1.089 -1.300 -0.627 1.808 sum -13.456 -16.149 15.365 26.037 Atomic orbital electron populations 1.21562 0.90350 1.05159 1.03765 1.30214 1.07027 1.24601 1.12072 1.05449 0.74546 0.77556 0.74801 1.93559 1.83561 1.71897 1.44645 1.93601 1.83377 1.71698 1.44284 1.30411 1.25255 1.19293 0.99570 1.20838 0.94991 0.93730 0.96273 1.21259 0.94268 1.01755 0.98407 1.21463 1.00454 0.94266 0.91993 1.20310 0.93685 0.98244 0.96310 1.20881 0.99205 1.00351 0.92220 1.21497 1.00400 0.92674 0.99052 1.19593 0.95055 0.97941 0.92540 1.21161 1.35481 0.92088 1.07168 0.91066 1.25049 0.95447 0.95621 0.97493 1.69919 1.40160 1.20648 1.23585 0.86758 0.78080 0.83628 0.80665 1.20276 1.21434 1.19057 1.20905 0.94508 0.92369 0.96577 0.89831 0.90811 0.90659 0.84576 0.84768 0.84518 0.85212 0.85101 0.91012 0.90957 0.92437 0.92622 0.96641 0.96973 0.92754 0.84077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.92 37.16 0.37 -0.48 16 2 C -0.61 -3.67 6.70 37.16 0.25 -3.42 16 3 S 2.50 26.12 5.16 -107.50 -0.55 25.57 16 4 O -0.94 -12.11 17.12 -57.54 -0.99 -13.09 16 5 O -0.93 -13.15 17.13 -57.54 -0.99 -14.13 16 6 C -0.66 -7.75 5.66 -39.58 -0.22 -7.97 16 7 C -0.04 -0.43 9.47 -39.59 -0.37 -0.80 16 8 C -0.14 -1.47 10.05 -39.58 -0.40 -1.87 16 9 C -0.06 -0.77 9.70 -39.58 -0.38 -1.16 16 10 C -0.08 -1.17 5.13 -104.63 -0.54 -1.71 16 11 C -0.09 -1.36 5.34 -27.88 -0.15 -1.51 16 12 C -0.10 -1.94 5.14 -26.73 -0.14 -2.08 16 13 C -0.01 -0.33 4.04 -27.88 -0.11 -0.45 16 14 C -0.52 -15.10 9.66 -34.44 -0.33 -15.43 16 15 H 0.07 2.23 7.99 -52.48 -0.42 1.81 16 16 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 17 N -0.90 -28.31 13.96 55.43 0.77 -27.54 16 18 Si 0.88 21.82 27.47 -169.99 -4.67 17.15 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 22 C -0.02 -0.33 9.13 -39.58 -0.36 -0.69 16 23 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 24 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.14 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.13 0.53 8.14 -51.92 -0.42 0.11 16 28 H 0.14 1.19 7.57 -52.48 -0.40 0.79 16 29 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16 30 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 31 H 0.07 1.01 8.08 -51.93 -0.42 0.59 16 32 H 0.07 1.03 8.09 -51.93 -0.42 0.61 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.02 0.36 7.20 -51.93 -0.37 -0.01 16 36 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 37 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 38 H 0.14 1.77 7.57 -52.49 -0.40 1.37 16 LS Contribution 332.48 15.07 5.01 5.01 Total: -1.00 -36.41 332.48 -9.69 -46.10 By element: Atomic # 1 Polarization: 2.46 SS G_CDS: -5.79 Total: -3.33 kcal Atomic # 6 Polarization: -33.25 SS G_CDS: -2.49 Total: -35.74 kcal Atomic # 7 Polarization: -28.31 SS G_CDS: 0.77 Total: -27.54 kcal Atomic # 8 Polarization: -25.25 SS G_CDS: -1.97 Total: -27.22 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.67 Total: 17.15 kcal Atomic # 16 Polarization: 26.12 SS G_CDS: -0.55 Total: 25.57 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -36.41 -9.69 -46.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065430.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.403 kcal (2) G-P(sol) polarization free energy of solvation -36.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds