Wall clock time and date at job start Tue Mar 31 2020 05:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 S 1.81398 * 109.47302 * 2 1 4 4 O 1.42096 * 110.54461 * 68.36603 * 3 2 1 5 5 O 1.42105 * 110.53894 * 291.62212 * 3 2 1 6 6 C 1.76199 * 104.44805 * 179.97438 * 3 2 1 7 7 C 1.38253 * 120.00077 * 269.94862 * 6 3 2 8 8 C 1.38204 * 119.99863 * 179.97438 * 7 6 3 9 9 C 1.38261 * 120.00515 * 0.07163 * 8 7 6 10 10 C 1.38208 * 119.99533 * 359.95684 * 9 8 7 11 11 C 1.50701 * 119.99804 * 180.02562 * 10 9 8 12 12 C 1.52999 * 109.47008 * 270.01729 * 11 10 9 13 13 C 1.53000 * 109.47111 * 180.02562 * 12 11 10 14 14 C 1.50704 * 109.47238 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.99745 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00196 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00154 * 179.97438 * 16 14 13 18 18 Si 1.86796 * 119.99791 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.47143 * 90.00448 * 18 16 14 20 20 H 1.48507 * 109.47079 * 210.00177 * 18 16 14 21 21 H 1.48502 * 109.47660 * 330.00152 * 18 16 14 22 22 C 1.38220 * 119.99875 * 90.00066 * 6 3 2 23 23 H 1.09002 * 109.46978 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47517 * 300.00484 * 1 2 3 25 25 H 1.09000 * 109.46496 * 60.00583 * 1 2 3 26 26 H 1.08996 * 109.46899 * 239.99078 * 2 1 3 27 27 H 1.09004 * 109.46364 * 119.99901 * 2 1 3 28 28 H 1.08005 * 119.99943 * 0.04961 * 7 6 3 29 29 H 1.08004 * 120.00227 * 180.02562 * 8 7 6 30 30 H 1.07992 * 120.00025 * 179.97438 * 9 8 7 31 31 H 1.08990 * 109.47415 * 30.02092 * 11 10 9 32 32 H 1.09006 * 109.46768 * 150.01991 * 11 10 9 33 33 H 1.09000 * 109.47213 * 299.99878 * 12 11 10 34 34 H 1.09000 * 109.47148 * 60.00017 * 12 11 10 35 35 H 1.09000 * 109.46721 * 299.99859 * 13 12 11 36 36 H 1.08996 * 109.47448 * 60.00309 * 13 12 11 37 37 H 0.97000 * 120.00068 * 179.97438 * 17 16 14 38 38 H 1.08000 * 119.99660 * 0.26988 * 22 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1348 1.7102 0.0000 4 8 1.8385 2.3439 1.2369 5 8 1.8387 2.3437 -1.2371 6 6 3.8900 1.5559 0.0008 7 6 4.5782 1.4966 1.1984 8 6 5.9549 1.3750 1.1989 9 6 6.6441 1.3142 0.0019 10 6 5.9561 1.3740 -1.1953 11 6 6.7073 1.3071 -2.5001 12 6 7.0883 2.7214 -2.9423 13 6 7.8503 2.6536 -4.2673 14 6 8.2263 4.0465 -4.7025 15 1 7.9490 4.8954 -4.0950 16 6 8.9241 4.2374 -5.8762 17 7 9.2517 5.4530 -6.2562 18 14 9.4043 2.7692 -6.9265 19 1 8.3241 2.4865 -7.9056 20 1 10.6641 3.0709 -7.6527 21 1 9.6065 1.5829 -6.0563 22 6 4.5789 1.4952 -1.1960 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3632 0.5138 -0.8901 26 1 1.8933 -0.5140 -0.8899 27 1 1.8933 -0.5139 0.8901 28 1 4.0399 1.5441 2.1335 29 1 6.4926 1.3283 2.1344 30 1 7.7199 1.2196 0.0024 31 1 7.6106 0.7116 -2.3692 32 1 6.0755 0.8468 -3.2598 33 1 6.1849 3.3170 -3.0732 34 1 7.7200 3.1818 -2.1826 35 1 8.7538 2.0579 -4.1367 36 1 7.2183 2.1934 -5.0268 37 1 9.7430 5.5872 -7.0818 38 1 4.0417 1.5468 -2.1315 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250065430.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:21 Heat of formation + Delta-G solvation = -92.133199 kcal Electronic energy + Delta-G solvation = -19326.056083 eV Core-core repulsion = 16259.020703 eV Total energy + Delta-G solvation = -3067.035380 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.108 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.41116 -38.16742 -37.01268 -36.55437 -34.59832 -34.02430 -32.37526 -32.17467 -28.85666 -25.32602 -25.15307 -23.95285 -22.67146 -21.78216 -19.81159 -18.99649 -18.44517 -17.41432 -17.21605 -16.83647 -16.39070 -16.34091 -15.43651 -15.22068 -15.09441 -14.90753 -14.40918 -14.28228 -14.10222 -13.62730 -13.37218 -13.31625 -13.19925 -13.17640 -13.07915 -12.76774 -12.51553 -12.40205 -12.37360 -11.83544 -11.77748 -11.53182 -11.46360 -11.34196 -11.25181 -10.77308 -10.27105 -9.76125 -8.30117 -6.35284 -0.91312 -0.14217 0.30453 1.36209 1.38656 1.50858 1.89984 2.36447 2.45133 2.97797 3.05186 3.14589 3.71310 3.73695 3.86264 3.96611 4.08092 4.21504 4.28501 4.41496 4.43191 4.47238 4.60170 4.71589 4.75648 4.85981 4.96299 5.00319 5.05048 5.08728 5.12407 5.14495 5.31265 5.47690 5.51661 5.64780 5.66303 5.89831 6.27849 6.73248 7.29432 8.87293 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.025183 B = 0.003457 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.592534 B = 8096.475661 C = 8489.966498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.577 4.577 3 S 2.492 3.508 4 O -0.971 6.971 5 O -0.981 6.981 6 C -0.663 4.663 7 C -0.043 4.043 8 C -0.136 4.136 9 C -0.072 4.072 10 C -0.105 4.105 11 C -0.078 4.078 12 C -0.092 4.092 13 C -0.011 4.011 14 C -0.538 4.538 15 H 0.023 0.977 16 C -0.002 4.002 17 N -0.955 5.955 18 Si 0.958 3.042 19 H -0.266 1.266 20 H -0.284 1.284 21 H -0.240 1.240 22 C -0.044 4.044 23 H 0.110 0.890 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.158 0.842 27 H 0.166 0.834 28 H 0.159 0.841 29 H 0.161 0.839 30 H 0.145 0.855 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.037 0.963 34 H 0.046 0.954 35 H 0.027 0.973 36 H 0.022 0.978 37 H 0.266 0.734 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.462 -19.484 17.173 29.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.710 4.710 3 S 2.677 3.323 4 O -0.969 6.969 5 O -0.978 6.978 6 C -0.749 4.749 7 C -0.062 4.062 8 C -0.155 4.155 9 C -0.090 4.090 10 C -0.106 4.106 11 C -0.115 4.115 12 C -0.130 4.130 13 C -0.049 4.049 14 C -0.576 4.576 15 H 0.042 0.958 16 C -0.198 4.198 17 N -0.596 5.596 18 Si 0.781 3.219 19 H -0.191 1.191 20 H -0.210 1.210 21 H -0.163 1.163 22 C -0.063 4.063 23 H 0.128 0.872 24 H 0.095 0.905 25 H 0.089 0.911 26 H 0.176 0.824 27 H 0.184 0.816 28 H 0.177 0.823 29 H 0.179 0.821 30 H 0.163 0.837 31 H 0.106 0.894 32 H 0.099 0.901 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.046 0.954 36 H 0.040 0.960 37 H 0.075 0.925 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -14.820 -18.581 17.051 29.251 hybrid contribution 1.090 -0.071 -0.842 1.379 sum -13.730 -18.652 16.209 28.269 Atomic orbital electron populations 1.21782 0.89768 1.06848 1.03926 1.29981 1.07240 1.19021 1.14785 1.05479 0.73880 0.79779 0.73194 1.93509 1.83626 1.74504 1.45210 1.93539 1.83732 1.74735 1.45820 1.30553 1.25989 1.18909 0.99456 1.21241 0.95473 0.92658 0.96808 1.21643 0.94336 1.00315 0.99178 1.21717 1.01338 0.93975 0.91946 1.20242 0.93909 1.00217 0.96247 1.20699 1.00372 0.97037 0.93427 1.21341 0.98817 0.95823 0.97042 1.19556 0.96070 0.94629 0.94616 1.21562 1.35546 0.93551 1.06967 0.95826 1.26147 0.95273 0.99239 0.99125 1.70093 1.41412 1.23594 1.24514 0.85543 0.77890 0.79762 0.78731 1.19135 1.21005 1.16273 1.20987 0.94671 0.93383 0.97218 0.87155 0.90466 0.91072 0.82446 0.81622 0.82326 0.82109 0.83684 0.89355 0.90058 0.94407 0.93541 0.95431 0.95993 0.92485 0.84468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 9.92 71.98 0.71 -0.68 16 2 C -0.58 -5.13 6.70 71.98 0.48 -4.64 16 3 S 2.49 50.69 5.16 -56.49 -0.29 50.40 16 4 O -0.97 -24.65 17.12 -127.65 -2.19 -26.84 16 5 O -0.98 -28.59 17.13 -127.65 -2.19 -30.78 16 6 C -0.66 -14.98 5.66 22.27 0.13 -14.86 16 7 C -0.04 -0.85 9.47 22.27 0.21 -0.64 16 8 C -0.14 -2.56 10.05 22.27 0.22 -2.34 16 9 C -0.07 -1.61 9.70 22.27 0.22 -1.40 16 10 C -0.11 -2.81 5.13 -19.87 -0.10 -2.91 16 11 C -0.08 -2.28 5.34 29.85 0.16 -2.12 16 12 C -0.09 -3.69 5.14 30.59 0.16 -3.53 16 13 C -0.01 -0.54 4.04 29.85 0.12 -0.42 16 14 C -0.54 -32.21 9.66 25.60 0.25 -31.96 16 15 H 0.02 1.57 7.99 -2.91 -0.02 1.55 16 16 C 0.00 -0.10 5.47 84.65 0.46 0.36 16 17 N -0.96 -61.71 13.96 21.45 0.30 -61.41 16 18 Si 0.96 44.57 27.47 68.60 1.88 46.45 16 19 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 20 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 21 H -0.24 -10.06 6.54 99.48 0.65 -9.41 16 22 C -0.04 -1.15 9.13 22.27 0.20 -0.95 16 23 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 24 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 25 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.16 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.17 0.54 8.14 -2.39 -0.02 0.53 16 28 H 0.16 2.35 7.57 -2.91 -0.02 2.33 16 29 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16 30 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 31 H 0.09 2.27 8.08 -2.39 -0.02 2.25 16 32 H 0.08 2.20 8.09 -2.38 -0.02 2.18 16 33 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.03 1.23 7.20 -2.39 -0.02 1.21 16 36 H 0.02 0.99 7.57 -2.39 -0.02 0.97 16 37 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 38 H 0.14 3.55 7.57 -2.91 -0.02 3.53 16 Total: -1.00 -82.46 332.48 1.71 -80.75 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: 0.97 Total: 7.50 kcal Atomic # 6 Polarization: -69.31 SS G_CDS: 3.22 Total: -66.08 kcal Atomic # 7 Polarization: -61.71 SS G_CDS: 0.30 Total: -61.41 kcal Atomic # 8 Polarization: -53.24 SS G_CDS: -4.37 Total: -57.61 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 1.88 Total: 46.45 kcal Atomic # 16 Polarization: 50.69 SS G_CDS: -0.29 Total: 50.40 kcal Total: -82.46 1.71 -80.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065430.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.383 kcal (2) G-P(sol) polarization free energy of solvation -82.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds