Wall clock time and date at job start Tue Mar 31 2020 05:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30748 * 1 3 3 Si 1.86794 * 119.99684 * 2 1 4 4 H 1.48497 * 109.47157 * 274.98227 * 3 2 1 5 5 H 1.48503 * 109.47489 * 34.98587 * 3 2 1 6 6 H 1.48500 * 109.47066 * 154.98383 * 3 2 1 7 7 C 1.40022 * 119.99918 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00003 * 186.35128 * 7 2 1 9 9 C 1.41315 * 120.00118 * 6.34578 * 7 2 1 10 10 C 1.40600 * 119.78162 * 173.77882 * 9 7 2 11 11 C 1.38340 * 119.14410 * 180.02562 * 10 9 7 12 12 C 1.38638 * 118.68549 * 0.02562 * 11 10 9 13 13 C 1.39760 * 119.48959 * 359.97438 * 12 11 10 14 14 N 1.38827 * 119.58479 * 179.97438 * 13 12 11 15 15 C 1.46499 * 119.99925 * 0.02562 * 14 13 12 16 16 C 1.53007 * 109.47259 * 179.97438 * 15 14 13 17 17 S 1.81390 * 109.47195 * 180.02562 * 16 15 14 18 18 C 1.81397 * 103.00024 * 179.97438 * 17 16 15 19 19 C 1.52997 * 109.47468 * 179.97438 * 18 17 16 20 20 C 1.52996 * 109.47538 * 180.02562 * 19 18 17 21 21 O 1.42900 * 109.47705 * 180.02562 * 20 19 18 22 22 N 1.31972 * 120.83087 * 0.25847 * 13 12 11 23 23 H 0.97000 * 120.00114 * 0.02562 * 1 2 3 24 24 H 1.07993 * 120.42445 * 0.02562 * 10 9 7 25 25 H 1.08004 * 120.65783 * 179.97438 * 11 10 9 26 26 H 1.08006 * 120.26025 * 180.02562 * 12 11 10 27 27 H 0.96999 * 120.00216 * 180.02562 * 14 13 12 28 28 H 1.09007 * 109.47248 * 59.99625 * 15 14 13 29 29 H 1.09004 * 109.47045 * 299.99684 * 15 14 13 30 30 H 1.09000 * 109.46557 * 299.99941 * 16 15 14 31 31 H 1.09003 * 109.46585 * 59.99796 * 16 15 14 32 32 H 1.08999 * 109.47309 * 300.00286 * 18 17 16 33 33 H 1.09008 * 109.47060 * 60.00033 * 18 17 16 34 34 H 1.08999 * 109.47430 * 300.00629 * 19 18 17 35 35 H 1.09001 * 109.47244 * 60.00272 * 19 18 17 36 36 H 1.09009 * 109.46952 * 300.00099 * 20 19 18 37 37 H 1.08995 * 109.47367 * 60.00137 * 20 19 18 38 38 H 0.96701 * 114.00293 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.3835 2.1072 -1.3947 5 1 1.4955 2.6200 0.8028 6 1 3.5876 1.4121 0.5921 7 6 2.0076 -1.2126 -0.0005 8 1 3.0826 -1.2156 0.1029 9 6 1.3075 -2.4327 -0.1364 10 6 2.0216 -3.6366 -0.2681 11 6 1.3229 -4.8233 -0.4008 12 6 -0.0629 -4.7833 -0.3997 13 6 -0.7156 -3.5548 -0.2651 14 7 -2.1032 -3.5124 -0.2642 15 6 -2.8740 -4.7505 -0.4033 16 6 -4.3691 -4.4269 -0.3710 17 16 -5.3234 -5.9599 -0.5425 18 6 -7.0411 -5.3803 -0.4816 19 6 -7.9876 -6.5748 -0.6163 20 6 -9.4365 -6.0858 -0.5656 21 8 -10.3205 -7.2015 -0.6907 22 7 -0.0295 -2.4340 -0.1443 23 1 -0.4850 0.8400 -0.0004 24 1 3.1015 -3.6350 -0.2658 25 1 1.8466 -5.7621 -0.5040 26 1 -0.6338 -5.6945 -0.5012 27 1 -2.5625 -2.6631 -0.1716 28 1 -2.6306 -5.4243 0.4183 29 1 -2.6257 -5.2285 -1.3510 30 1 -4.6169 -3.9491 0.5768 31 1 -4.6127 -3.7529 -1.1924 32 1 -7.2218 -4.8784 0.4689 33 1 -7.2184 -4.6826 -1.3003 34 1 -7.8068 -7.0763 -1.5670 35 1 -7.8106 -7.2727 0.2021 36 1 -9.6176 -5.5841 0.3851 37 1 -9.6134 -5.3882 -1.3841 38 1 -11.2579 -6.9653 -0.6664 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319372255.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:05 Heat of formation + Delta-G solvation = -24.671446 kcal Electronic energy + Delta-G solvation = -18458.427501 eV Core-core repulsion = 15426.610233 eV Total energy + Delta-G solvation = -3031.817267 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.28705 -37.56798 -35.56722 -33.73014 -33.37519 -31.06142 -30.15358 -28.00262 -26.62897 -25.34428 -23.17900 -21.84395 -21.32335 -20.32174 -17.86770 -17.39141 -16.58324 -16.28434 -15.91801 -15.25169 -15.18538 -14.80870 -14.52116 -14.13181 -14.03155 -13.42143 -13.18127 -12.89004 -12.66197 -12.39715 -12.02618 -11.78167 -11.59866 -11.53882 -11.34543 -11.15917 -10.98513 -10.61558 -10.44285 -10.41695 -10.14061 -9.90875 -9.48061 -8.89905 -7.91096 -7.82315 -7.51460 -6.54010 -6.34241 -4.46823 1.34658 2.38585 2.87229 3.10958 3.14725 3.23905 3.29966 3.77325 3.98452 4.29982 4.45034 4.71148 4.77651 4.82981 4.88756 4.89813 4.93098 5.06982 5.22060 5.44894 5.62302 5.76320 5.92101 6.01462 6.11242 6.17219 6.58662 6.85352 6.89610 6.93619 7.16877 7.24550 7.59341 7.80838 7.91811 8.16377 8.34559 8.65447 8.80132 9.11130 10.23695 10.39851 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.028269 B = 0.002663 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.246286 B =10510.373427 C =11461.885935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.718 5.718 2 C 0.071 3.929 3 Si 0.906 3.094 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.435 4.435 8 H 0.084 0.916 9 C 0.292 3.708 10 C -0.314 4.314 11 C -0.032 4.032 12 C -0.365 4.365 13 C 0.411 3.589 14 N -0.738 5.738 15 C 0.160 3.840 16 C -0.098 4.098 17 S -0.239 6.239 18 C -0.088 4.088 19 C -0.105 4.105 20 C 0.081 3.919 21 O -0.574 6.574 22 N -0.531 5.531 23 H 0.269 0.731 24 H 0.096 0.904 25 H 0.094 0.906 26 H 0.091 0.909 27 H 0.395 0.605 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.048 0.952 37 H 0.048 0.952 38 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.766 -6.197 -0.739 17.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.340 5.340 2 C -0.154 4.154 3 Si 0.730 3.270 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.185 1.185 7 C -0.467 4.467 8 H 0.102 0.898 9 C 0.165 3.835 10 C -0.337 4.337 11 C -0.056 4.056 12 C -0.391 4.391 13 C 0.171 3.829 14 N -0.376 5.376 15 C 0.033 3.967 16 C -0.247 4.247 17 S -0.013 6.013 18 C -0.236 4.236 19 C -0.143 4.143 20 C 0.001 3.999 21 O -0.380 6.380 22 N -0.253 5.253 23 H 0.080 0.920 24 H 0.114 0.886 25 H 0.112 0.888 26 H 0.109 0.891 27 H 0.230 0.770 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -16.431 -6.820 -0.819 17.809 hybrid contribution -0.351 1.862 0.096 1.898 sum -16.783 -4.957 -0.723 17.514 Atomic orbital electron populations 1.70159 1.07185 1.27279 1.29329 1.26052 0.94848 1.00947 0.93512 0.86354 0.80608 0.81094 0.78954 1.19580 1.20274 1.18539 1.19582 0.94592 0.89508 1.43024 0.89824 1.18212 0.86805 0.91843 0.86658 1.21549 0.98477 0.93798 1.19925 1.20607 0.93430 0.96396 0.95190 1.20627 0.94653 0.95916 1.27945 1.18458 0.83939 0.90388 0.90066 1.44040 1.02884 1.07221 1.83479 1.20624 0.86179 0.88224 1.01640 1.23553 0.98344 0.97259 1.05506 1.86897 1.01574 1.15656 1.97135 1.23221 0.94180 1.01037 1.05202 1.21185 0.91499 0.96992 1.04673 1.22128 0.89719 0.88176 0.99852 1.86471 1.20038 1.34510 1.96963 1.68182 1.07948 1.24125 1.25035 0.92010 0.88628 0.88835 0.89118 0.77015 0.92112 0.92115 0.89448 0.89450 0.89808 0.89816 0.90115 0.90110 0.93391 0.93383 0.77171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -19.12 11.49 55.55 0.64 -18.48 16 2 C 0.07 1.84 5.49 -17.34 -0.10 1.74 16 3 Si 0.91 18.79 29.56 -169.99 -5.03 13.77 16 4 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 5 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 6 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 7 C -0.43 -11.87 9.13 -37.74 -0.34 -12.22 16 8 H 0.08 2.14 7.86 -52.48 -0.41 1.73 16 9 C 0.29 8.22 6.54 -84.99 -0.56 7.67 16 10 C -0.31 -8.07 9.83 -38.65 -0.38 -8.45 16 11 C -0.03 -0.75 10.15 -39.40 -0.40 -1.15 16 12 C -0.37 -8.62 9.34 -38.87 -0.36 -8.98 16 13 C 0.41 10.18 7.65 -155.32 -1.19 8.99 16 14 N -0.74 -14.82 5.72 -60.39 -0.35 -15.16 16 15 C 0.16 2.55 4.89 -4.04 -0.02 2.53 16 16 C -0.10 -1.22 6.05 37.16 0.22 -0.99 16 17 S -0.24 -2.80 21.74 -107.50 -2.34 -5.14 16 18 C -0.09 -0.74 5.94 37.16 0.22 -0.52 16 19 C -0.10 -0.87 5.59 -26.73 -0.15 -1.02 16 20 C 0.08 0.54 7.05 37.16 0.26 0.80 16 21 O -0.57 -4.40 13.66 -35.23 -0.48 -4.88 16 22 N -0.53 -14.82 7.91 -10.33 -0.08 -14.90 16 23 H 0.27 6.48 8.29 -40.82 -0.34 6.14 16 24 H 0.10 2.27 8.06 -52.49 -0.42 1.85 16 25 H 0.09 1.89 8.06 -52.48 -0.42 1.47 16 26 H 0.09 1.92 6.68 -52.48 -0.35 1.57 16 27 H 0.40 7.75 8.59 -40.82 -0.35 7.40 16 28 H 0.06 1.00 7.92 -51.93 -0.41 0.59 16 29 H 0.06 1.00 7.92 -51.93 -0.41 0.59 16 30 H 0.09 1.03 8.14 -51.92 -0.42 0.61 16 31 H 0.09 1.03 8.14 -51.92 -0.42 0.61 16 32 H 0.08 0.64 8.14 -51.92 -0.42 0.22 16 33 H 0.08 0.64 8.14 -51.92 -0.42 0.22 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.05 0.27 8.14 -51.92 -0.42 -0.16 16 37 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 38 H 0.38 1.11 9.12 45.56 0.42 1.52 16 LS Contribution 336.69 15.07 5.07 5.07 Total: -1.00 -31.58 336.69 -10.23 -41.81 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -4.88 Total: 9.52 kcal Atomic # 6 Polarization: -8.81 SS G_CDS: -2.79 Total: -11.60 kcal Atomic # 7 Polarization: -48.76 SS G_CDS: 0.21 Total: -48.55 kcal Atomic # 8 Polarization: -4.40 SS G_CDS: -0.48 Total: -4.88 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.77 kcal Atomic # 16 Polarization: -2.80 SS G_CDS: -2.34 Total: -5.14 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.58 -10.23 -41.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319372255.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.134 kcal (2) G-P(sol) polarization free energy of solvation -31.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds