Wall clock time and date at job start Tue Mar 31 2020 05:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46519 * 2 1 4 4 H 1.09000 * 109.46914 * 55.00276 * 3 2 1 5 5 C 1.50706 * 109.46924 * 174.99987 * 3 2 1 6 6 H 1.07992 * 119.99966 * 120.00076 * 5 3 2 7 7 C 1.37880 * 119.99531 * 300.00174 * 5 3 2 8 8 N 1.31514 * 119.99685 * 179.97438 * 7 5 3 9 9 Si 1.86792 * 120.00304 * 359.97438 * 7 5 3 10 10 H 1.48502 * 109.47159 * 90.00397 * 9 7 5 11 11 H 1.48502 * 109.47370 * 209.99872 * 9 7 5 12 12 H 1.48492 * 109.47351 * 330.00389 * 9 7 5 13 13 N 1.46491 * 109.47370 * 294.99749 * 3 2 1 14 14 C 1.34777 * 120.00012 * 85.00395 * 13 3 2 15 15 O 1.21622 * 119.99922 * 5.21661 * 14 13 3 16 16 C 1.47164 * 119.99989 * 185.22098 * 14 13 3 17 17 C 1.38413 * 126.88183 * 260.03917 * 16 14 13 18 18 N 1.48016 * 127.32102 * 359.97438 * 17 16 14 19 19 O 1.21793 * 119.99865 * 179.97438 * 18 17 16 20 20 O 1.21807 * 119.99766 * 359.72462 * 18 17 16 21 21 C 1.39672 * 105.35814 * 180.24646 * 17 16 14 22 22 N 1.30866 * 107.86326 * 359.63034 * 21 17 16 23 23 N 1.28445 * 110.92452 * 0.38694 * 22 21 17 24 24 C 1.46503 * 125.19118 * 179.79165 * 23 22 21 25 25 H 1.09008 * 109.47108 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47582 * 300.00052 * 1 2 3 27 27 H 1.09002 * 109.47219 * 60.00170 * 1 2 3 28 28 H 1.09002 * 109.47240 * 240.00559 * 2 1 3 29 29 H 1.08988 * 109.47253 * 119.99907 * 2 1 3 30 30 H 0.97001 * 120.00624 * 179.97438 * 8 7 5 31 31 H 0.97002 * 120.00359 * 265.00219 * 13 3 2 32 32 H 1.07999 * 126.06823 * 179.75111 * 21 17 16 33 33 H 1.09004 * 109.47130 * 274.94231 * 24 23 22 34 34 H 1.09000 * 109.47057 * 34.93789 * 24 23 22 35 35 H 1.08991 * 109.47272 * 154.93921 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 1 1.6052 1.9815 0.8418 5 6 3.5418 1.4445 0.1238 6 1 4.1470 1.8891 -0.6522 7 6 4.1431 0.8786 1.2280 8 7 5.4538 0.8798 1.3359 9 14 3.0962 0.1102 2.5707 10 1 2.8745 -1.3259 2.2646 11 1 3.7940 0.2360 3.8755 12 1 1.7880 0.8093 2.6394 13 7 1.6523 2.0975 -1.2517 14 6 0.4350 2.6644 -1.3669 15 8 -0.3053 2.7162 -0.4033 16 6 0.0015 3.2206 -2.6586 17 6 0.0139 4.5523 -3.0358 18 7 0.4627 5.7093 -2.2292 19 8 0.4158 6.8328 -2.6971 20 8 0.8747 5.5383 -1.0957 21 6 -0.4932 4.5729 -4.3371 22 7 -0.7671 3.3402 -4.6807 23 7 -0.4941 2.5262 -3.7254 24 6 -0.6843 1.0743 -3.7730 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 5.8770 0.4820 2.1128 31 1 2.2718 2.1233 -1.9977 32 1 -0.6324 5.4502 -4.9514 33 1 -1.7118 0.8334 -3.5003 34 1 -0.4822 0.7143 -4.7818 35 1 -0.0006 0.5952 -3.0724 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323929269.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:40 Heat of formation + Delta-G solvation = 50.124969 kcal Electronic energy + Delta-G solvation = -22934.770630 eV Core-core repulsion = 19359.903565 eV Total energy + Delta-G solvation = -3574.867066 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.116 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.42661 -41.61129 -39.44950 -36.31773 -35.67460 -34.19507 -32.78346 -32.12284 -31.32408 -28.37014 -27.74774 -26.21992 -23.74188 -22.65811 -22.08037 -20.85793 -20.07585 -19.15595 -18.41419 -17.84683 -17.54296 -16.68249 -16.57879 -15.87551 -15.81413 -15.13559 -14.78835 -14.06330 -13.60803 -13.40731 -13.37107 -13.22332 -12.65106 -12.15056 -12.04556 -11.77549 -11.40309 -11.32235 -11.12199 -11.00801 -10.92133 -10.83149 -10.16963 -10.11102 -9.99791 -9.84328 -9.58741 -9.39847 -8.89861 -8.43665 -6.29973 -4.34359 0.11763 1.12701 1.26201 1.91824 2.07884 2.60320 3.13783 3.19725 3.29254 3.31786 3.82692 4.21897 4.33224 4.43009 4.61242 4.75907 4.80596 4.93896 5.02077 5.42723 5.64820 5.75341 5.86917 5.89773 6.33734 6.43897 6.46158 6.53650 6.64350 6.89694 7.01570 7.19941 7.30679 7.78816 7.82698 8.25636 8.34534 8.68494 9.27953 10.81907 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.020425 B = 0.005981 C = 0.005193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.548677 B = 4680.717705 C = 5390.566612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.142 4.142 3 C 0.242 3.758 4 H 0.059 0.941 5 C -0.539 4.539 6 H 0.082 0.918 7 C 0.082 3.918 8 N -0.887 5.887 9 Si 0.881 3.119 10 H -0.275 1.275 11 H -0.291 1.291 12 H -0.258 1.258 13 N -0.676 5.676 14 C 0.571 3.429 15 O -0.504 6.504 16 C 0.083 3.917 17 C -0.135 4.135 18 N 0.064 4.936 19 O -0.161 6.161 20 O -0.139 6.139 21 C 0.080 3.920 22 N -0.270 5.270 23 N -0.254 5.254 24 C 0.077 3.923 25 H 0.039 0.961 26 H 0.057 0.943 27 H 0.040 0.960 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.269 0.731 31 H 0.398 0.602 32 H 0.212 0.788 33 H 0.099 0.901 34 H 0.112 0.888 35 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.734 -0.549 -11.723 16.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.180 4.180 3 C 0.140 3.860 4 H 0.077 0.923 5 C -0.577 4.577 6 H 0.100 0.900 7 C -0.123 4.123 8 N -0.523 5.523 9 Si 0.710 3.290 10 H -0.202 1.202 11 H -0.218 1.218 12 H -0.183 1.183 13 N -0.324 5.324 14 C 0.350 3.650 15 O -0.378 6.378 16 C -0.054 4.054 17 C -0.232 4.232 18 N 0.584 4.416 19 O -0.374 6.374 20 O -0.357 6.357 21 C -0.100 4.100 22 N -0.099 5.099 23 N -0.039 5.039 24 C -0.062 4.062 25 H 0.059 0.941 26 H 0.076 0.924 27 H 0.059 0.941 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.232 0.768 32 H 0.228 0.772 33 H 0.118 0.882 34 H 0.130 0.870 35 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -12.745 -1.992 -12.182 17.742 hybrid contribution 0.288 0.336 1.086 1.173 sum -12.457 -1.656 -11.096 16.764 Atomic orbital electron populations 1.21919 0.97202 0.99623 1.01822 1.22349 0.94046 0.99805 1.01845 1.19358 0.96431 0.88271 0.81961 0.92321 1.20941 0.88045 1.40393 1.08307 0.90020 1.24806 0.94888 0.95061 0.97501 1.69850 1.08687 1.43939 1.29795 0.86941 0.81131 0.79736 0.81229 1.20197 1.21826 1.18297 1.46198 1.13270 1.53958 1.18954 1.16750 0.84132 0.79574 0.84513 1.90889 1.54419 1.56064 1.36402 1.21994 1.00214 0.91003 0.92147 1.21436 1.19090 0.86343 0.96295 1.42289 0.98079 1.00666 1.00553 1.94510 1.59606 1.08072 1.75213 1.94711 1.47004 1.91832 1.02112 1.23590 0.98465 0.95839 0.92153 1.73470 1.21617 0.99977 1.14835 1.45825 1.41964 1.09122 1.07005 1.22605 1.05515 0.71184 1.06887 0.94144 0.92353 0.94069 0.91977 0.91953 0.92076 0.76790 0.77175 0.88229 0.86982 0.87366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 8.58 37.16 0.32 -2.19 16 2 C -0.14 -2.76 5.11 -26.73 -0.14 -2.90 16 3 C 0.24 5.31 1.84 -69.08 -0.13 5.18 16 4 H 0.06 1.45 6.56 -51.93 -0.34 1.11 16 5 C -0.54 -13.86 9.31 -34.44 -0.32 -14.18 16 6 H 0.08 2.24 7.98 -52.49 -0.42 1.82 16 7 C 0.08 2.21 5.45 -17.82 -0.10 2.11 16 8 N -0.89 -25.46 13.96 55.43 0.77 -24.68 16 9 Si 0.88 20.60 24.41 -169.99 -4.15 16.45 16 10 H -0.28 -6.14 6.83 56.52 0.39 -5.75 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.26 -5.96 6.53 56.52 0.37 -5.59 16 13 N -0.68 -12.47 5.01 -56.10 -0.28 -12.75 16 14 C 0.57 10.29 4.22 -12.64 -0.05 10.24 16 15 O -0.50 -10.63 14.67 5.26 0.08 -10.55 16 16 C 0.08 1.26 6.71 -82.06 -0.55 0.71 16 17 C -0.14 -2.07 7.29 -79.35 -0.58 -2.65 16 18 N 0.06 1.13 4.45 34.25 0.15 1.28 16 19 O -0.16 -2.70 19.10 -29.46 -0.56 -3.26 16 20 O -0.14 -2.84 18.08 -29.46 -0.53 -3.37 16 21 C 0.08 0.94 11.83 -17.43 -0.21 0.74 16 22 N -0.27 -3.15 11.90 30.59 0.36 -2.79 16 23 N -0.25 -2.99 3.75 -63.88 -0.24 -3.23 16 24 C 0.08 0.59 11.22 59.85 0.67 1.26 16 25 H 0.04 0.58 8.14 -51.92 -0.42 0.15 16 26 H 0.06 1.09 7.92 -51.93 -0.41 0.68 16 27 H 0.04 0.63 5.05 -51.93 -0.26 0.37 16 28 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.06 1.31 3.22 -51.94 -0.17 1.14 16 30 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 31 H 0.40 6.61 8.53 -40.82 -0.35 6.26 16 32 H 0.21 1.73 8.06 -52.49 -0.42 1.30 16 33 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.11 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.11 0.86 6.95 -51.93 -0.36 0.50 16 LS Contribution 302.50 15.07 4.56 4.56 Total: -1.00 -32.04 302.50 -4.53 -36.57 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -3.61 Total: 3.46 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: -1.08 Total: -1.68 kcal Atomic # 7 Polarization: -42.94 SS G_CDS: 0.77 Total: -42.17 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: -1.02 Total: -17.18 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.15 Total: 16.45 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -32.04 -4.53 -36.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323929269.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.694 kcal (2) G-P(sol) polarization free energy of solvation -32.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds