Wall clock time and date at job start Tue Mar 31 2020 05:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38618 * 120.44771 * 2 1 4 4 C 1.38583 * 118.39892 * 179.97438 * 3 2 1 5 5 C 1.50701 * 120.44572 * 180.02562 * 4 3 2 6 6 S 1.81404 * 109.47098 * 90.00149 * 5 4 3 7 7 O 1.42100 * 109.46600 * 296.38501 * 6 5 4 8 8 C 1.81397 * 103.00143 * 179.97438 * 6 5 4 9 9 C 1.52997 * 109.47527 * 179.97438 * 8 6 5 10 10 C 1.52993 * 109.47431 * 179.97438 * 9 8 6 11 11 C 1.50697 * 109.47166 * 179.97438 * 10 9 8 12 12 H 1.07997 * 120.00391 * 0.02562 * 11 10 9 13 13 C 1.37879 * 119.99888 * 180.02562 * 11 10 9 14 14 N 1.31510 * 120.00302 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 119.99788 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47077 * 89.99764 * 15 13 11 17 17 H 1.48505 * 109.46982 * 209.99728 * 15 13 11 18 18 H 1.48499 * 109.47080 * 329.99893 * 15 13 11 19 19 N 1.32345 * 119.10644 * 0.27467 * 4 3 2 20 20 C 1.31781 * 120.81411 * 359.44306 * 19 4 3 21 21 C 1.50711 * 119.12023 * 180.26355 * 20 19 4 22 22 N 1.31811 * 121.75789 * 0.57271 * 20 19 4 23 23 H 1.08996 * 109.47008 * 89.99734 * 1 2 3 24 24 H 1.09006 * 109.46731 * 210.00315 * 1 2 3 25 25 H 1.08997 * 109.47038 * 329.99471 * 1 2 3 26 26 H 1.08003 * 120.80237 * 359.96436 * 3 2 1 27 27 H 1.09002 * 109.47060 * 210.00099 * 5 4 3 28 28 H 1.09001 * 109.47380 * 330.00187 * 5 4 3 29 29 H 1.09007 * 109.46846 * 299.99983 * 8 6 5 30 30 H 1.09007 * 109.47453 * 59.99610 * 8 6 5 31 31 H 1.08996 * 109.46730 * 300.00157 * 9 8 6 32 32 H 1.08998 * 109.46901 * 59.99649 * 9 8 6 33 33 H 1.08997 * 109.47150 * 300.00312 * 10 9 8 34 34 H 1.08998 * 109.47082 * 60.00106 * 10 9 8 35 35 H 0.97001 * 120.00368 * 179.97438 * 14 13 11 36 36 H 1.08996 * 109.47003 * 270.29917 * 21 20 19 37 37 H 1.08997 * 109.46862 * 30.30270 * 21 20 19 38 38 H 1.09000 * 109.46758 * 150.29459 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2095 1.1950 0.0000 4 6 3.5944 1.1455 0.0005 5 6 4.4040 2.4165 0.0012 6 16 4.7282 2.9262 1.7117 7 8 3.4989 3.2304 2.3562 8 6 5.6972 4.4460 1.5080 9 6 6.0558 5.0106 2.8841 10 6 6.8737 6.2921 2.7123 11 6 7.2263 6.8485 4.0677 12 1 6.9001 6.3388 4.9622 13 6 7.9654 8.0083 4.1657 14 7 8.3631 8.6287 3.0765 15 14 8.4031 8.6975 5.8459 16 1 9.6998 8.1276 6.2922 17 1 8.5153 10.1759 5.7606 18 1 7.3423 8.3370 6.8205 19 7 4.1964 -0.0331 -0.0045 20 6 3.4956 -1.1491 0.0010 21 6 4.2206 -2.4704 0.0010 22 7 2.1776 -1.1407 0.0005 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8899 0.5139 26 1 1.6900 2.1419 -0.0006 27 1 5.3500 2.2450 -0.5124 28 1 3.8488 3.2013 -0.5127 29 1 6.6109 4.2232 0.9569 30 1 5.1100 5.1802 0.9563 31 1 5.1419 5.2334 3.4347 32 1 6.6428 4.2766 3.4361 33 1 7.7875 6.0689 2.1617 34 1 6.2870 7.0262 2.1600 35 1 8.8827 9.4449 3.1455 36 1 4.3958 -2.7887 -1.0266 37 1 5.1754 -2.3609 0.5153 38 1 3.6149 -3.2171 0.5145 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329342622.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:21 Heat of formation + Delta-G solvation = -15.307015 kcal Electronic energy + Delta-G solvation = -18789.257684 eV Core-core repulsion = 15757.846489 eV Total energy + Delta-G solvation = -3031.411195 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.32338 -35.61277 -35.03194 -34.47747 -34.31940 -32.05422 -29.69001 -29.39896 -27.82115 -27.42079 -23.57258 -22.54807 -22.03995 -20.29320 -17.93862 -17.49228 -16.39129 -16.03437 -15.85911 -15.40552 -15.00830 -14.89943 -14.43026 -14.27818 -13.73666 -13.68469 -13.38483 -13.15870 -12.65967 -12.56731 -12.52428 -12.40973 -12.12955 -11.95312 -11.48321 -11.07597 -10.96628 -10.88271 -10.78364 -10.61013 -10.14237 -9.82631 -9.61372 -9.47871 -9.24805 -9.04506 -8.37716 -8.07493 -6.02660 -4.05388 0.61643 0.75819 1.65969 2.69317 3.31146 3.37340 3.41482 3.50370 3.56048 3.70937 3.95482 4.09942 4.44554 4.72807 4.75796 4.89434 5.08264 5.18040 5.21934 5.28039 5.31049 5.33039 5.41072 5.42636 5.54616 5.58930 5.71754 5.72055 6.14227 6.24548 6.46414 6.65355 6.84312 7.00471 7.63039 7.75087 7.91344 7.96503 8.38180 9.01524 9.59037 11.08607 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.037439 B = 0.002794 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.698380 B =10017.944367 C =10250.813113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.181 3.819 3 C -0.228 4.228 4 C 0.209 3.791 5 C -0.413 4.413 6 S 1.244 4.756 7 O -0.840 6.840 8 C -0.431 4.431 9 C -0.094 4.094 10 C 0.027 3.973 11 C -0.523 4.523 12 H 0.057 0.943 13 C 0.057 3.943 14 N -0.896 5.896 15 Si 0.893 3.107 16 H -0.279 1.279 17 H -0.286 1.286 18 H -0.273 1.273 19 N -0.518 5.518 20 C 0.322 3.678 21 C -0.084 4.084 22 N -0.527 5.527 23 H 0.085 0.915 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.144 0.856 27 H 0.141 0.859 28 H 0.106 0.894 29 H 0.117 0.883 30 H 0.083 0.917 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.020 0.980 34 H 0.015 0.985 35 H 0.261 0.739 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.608 -20.717 -9.175 24.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.036 3.964 3 C -0.251 4.251 4 C 0.063 3.937 5 C -0.546 4.546 6 S 1.443 4.557 7 O -0.835 6.835 8 C -0.571 4.571 9 C -0.133 4.133 10 C -0.011 4.011 11 C -0.561 4.561 12 H 0.075 0.925 13 C -0.145 4.145 14 N -0.536 5.536 15 Si 0.721 3.279 16 H -0.205 1.205 17 H -0.212 1.212 18 H -0.198 1.198 19 N -0.234 5.234 20 C 0.055 3.945 21 C -0.142 4.142 22 N -0.243 5.243 23 H 0.103 0.897 24 H 0.102 0.898 25 H 0.100 0.900 26 H 0.162 0.838 27 H 0.159 0.841 28 H 0.124 0.876 29 H 0.135 0.865 30 H 0.102 0.898 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.038 0.962 34 H 0.033 0.967 35 H 0.070 0.930 36 H 0.103 0.897 37 H 0.108 0.892 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.374 -21.881 -8.437 25.255 hybrid contribution -1.243 3.113 -0.448 3.382 sum -10.616 -18.768 -8.885 23.321 Atomic orbital electron populations 1.20793 0.87729 1.04277 1.03604 1.21701 0.97620 0.87899 0.89216 1.22603 0.95714 1.00837 1.05929 1.20669 0.90728 0.92513 0.89807 1.26856 1.06401 0.97657 1.23689 1.71185 0.97813 1.02776 0.83947 1.93096 1.44432 1.84113 1.61844 1.27674 1.09626 1.13495 1.06274 1.21330 1.00745 1.00294 0.90919 1.19093 0.94529 0.90314 0.97184 1.21271 1.33504 1.08647 0.92721 0.92518 1.25028 0.95928 0.96858 0.96639 1.69959 1.37624 1.18459 1.27521 0.86579 0.78866 0.78117 0.84381 1.20533 1.21233 1.19828 1.68047 1.41506 0.97928 1.15944 1.23278 0.86614 0.94641 0.89965 1.20572 1.00079 0.89717 1.03857 1.68098 1.09733 1.30311 1.16195 0.89699 0.89781 0.89961 0.83806 0.84087 0.87556 0.86479 0.89847 0.92769 0.92010 0.96164 0.96708 0.92964 0.89683 0.89208 0.89655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 10.22 36.01 0.37 -0.47 16 2 C 0.18 2.09 6.82 -82.24 -0.56 1.53 16 3 C -0.23 -2.80 9.54 -39.31 -0.38 -3.17 16 4 C 0.21 2.62 6.08 -82.24 -0.50 2.12 16 5 C -0.41 -4.50 6.26 36.01 0.23 -4.28 16 6 S 1.24 16.31 13.14 -107.50 -1.41 14.90 16 7 O -0.84 -15.81 18.14 -35.23 -0.64 -16.45 16 8 C -0.43 -6.63 5.92 37.16 0.22 -6.41 16 9 C -0.09 -1.89 5.16 -26.74 -0.14 -2.03 16 10 C 0.03 0.70 4.97 -27.89 -0.14 0.56 16 11 C -0.52 -14.85 9.11 -34.44 -0.31 -15.17 16 12 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 14 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16 15 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 17 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 19 N -0.52 -6.39 10.27 -6.99 -0.07 -6.46 16 20 C 0.32 3.73 7.64 -157.19 -1.20 2.53 16 21 C -0.08 -0.63 10.32 36.01 0.37 -0.26 16 22 N -0.53 -6.41 10.27 -6.98 -0.07 -6.48 16 23 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.08 0.57 8.10 -51.93 -0.42 0.15 16 26 H 0.14 1.62 8.06 -52.48 -0.42 1.20 16 27 H 0.14 1.21 8.14 -51.92 -0.42 0.78 16 28 H 0.11 1.11 8.10 -51.92 -0.42 0.69 16 29 H 0.12 1.50 8.14 -51.92 -0.42 1.08 16 30 H 0.08 1.35 8.14 -51.92 -0.42 0.92 16 31 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 341.49 15.07 5.15 5.15 Total: -1.00 -36.64 341.49 -9.35 -45.99 By element: Atomic # 1 Polarization: 2.26 SS G_CDS: -5.88 Total: -3.62 kcal Atomic # 6 Polarization: -21.38 SS G_CDS: -2.14 Total: -23.52 kcal Atomic # 7 Polarization: -39.71 SS G_CDS: 0.59 Total: -39.12 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: -0.64 Total: -16.45 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: 16.31 SS G_CDS: -1.41 Total: 14.90 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -36.64 -9.35 -45.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329342622.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.686 kcal (2) G-P(sol) polarization free energy of solvation -36.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds